Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

75117935 .. 75119174

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG475000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCTTGGGGCCTTGGGTTGTGTTTTCCCTGAACTCCTAGCCCGCAATGGAGTGAAGTTCGGCGAAGCTGTTTGGTTCAAGGCCGAAGCCCAGATATTTAGCGAGGGTGGGTTAGATTACTTGGGAAACCCGAGCTTAGTCCATGCCCAAAGCATTTTGGCAATTTGGGCCACACAGGTCATCTTGATGGGTGCGGTTGAAGGCTATAGAATTGGCGGTGGGCCTCTTGGTGAGGTGGTAGACCCATTGTACCCTGGTGGGAGCTTTGATCCATTAGGACTTGCTGAAGATCCAGAGGCATTTGCAGAACTTAAGGTGAAGGAGCTAAAGAATGGGAGATTAGCCATGTTTTCCATGTTCGGATTTTTCGTGCAAGCCATTGTCACCGGAAAGGGACCAATCGAAAACCTCGCTGACCACTTGGCTGACCCTGTTAACAACAATGCTTGGTCATATGCAACAAACCTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

160

Amino Acids

17.01

Weight (kDa)

4.7

Isoelectric Point (pI)

16.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	1 - 127	7.2e-29	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	3 cut(s)	43, 194, 216
AclWI	GGATC	2 cut(s)	263, 284
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	251
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	79, 200
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	68, 135, 264, 325
AluI	AGCT	4 cut(s)	68, 135, 264, 325
AlwI	GGATC	2 cut(s)	263, 284
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	4 cut(s)	9, 81, 168, 221
AspS9I	GGNCC	4 cut(s)	9, 168, 221, 395
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	3 cut(s)	242, 328, 376
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	395
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	474
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	205
BfrI	CTTAAG	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	255, 474
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	4 cut(s)	9, 168, 221, 395
BmiI	GGNNCC	2 cut(s)	10, 396
BmrFI	CCNGG	2 cut(s)	255, 474
BpuMI	CCSGG	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	12, 253
BsaWI	WCCGGW	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	12, 253
BseMI	GCAATG	1 cut(s)	52
BshFI	GGCC	4 cut(s)	11, 83, 170, 223
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	387, 474
BslFI	GGGAC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	4 cut(s)	11, 83, 170, 223
BsoBI	CYCGRG	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	268, 289
BspACI	CCGC	3 cut(s)	43, 194, 216
BspANI	GGCC	4 cut(s)	11, 83, 170, 223
BspLI	GGNNCC	2 cut(s)	10, 396
BspPI	GGATC	2 cut(s)	263, 284
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	12, 253
BssMI	GATC	2 cut(s)	268, 289
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	43, 375
BstDEI	CTNAG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	271, 292
BstMBI	GATC	2 cut(s)	268, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	253, 472
BstSFI	CTRYAG	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	11, 83, 170, 223
Cac8I	GCNNGC	2 cut(s)	43, 375
Cfr13I	GGNCC	4 cut(s)	9, 168, 221, 395
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	143, 346, 355
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	2 cut(s)	270, 291
DpnII	GATC	2 cut(s)	268, 289
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	146, 349, 358
FaiI	YATR	6 cut(s)	144, 207, 347, 356, 454, 456
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	142, 345, 354
FauI	CCCGC	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	38
HaeIII	GGCC	4 cut(s)	11, 83, 170, 223
HapII	CCGG	2 cut(s)	387, 474
Hin1II	CATG	3 cut(s)	146, 349, 358
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	387, 474
HphI	GGTGA	3 cut(s)	242, 328, 376
Hpy166II	GTNNAC	2 cut(s)	241, 436
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	2 cut(s)	184, 293
Hpy8I	GTNNAC	2 cut(s)	241, 436
HpyAV	CCTTC	2 cut(s)	194, 313
HpyCH4V	TGCA	3 cut(s)	305, 373, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	146, 349, 358
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	268, 289
LmnI	GCTCC	2 cut(s)	261, 322
LpnPI	CCDG	8 cut(s)	42, 104, 161, 240, 267, 306, 400, 444
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	270, 291
MboI	GATC	2 cut(s)	268, 289
MboII	GAAGA	1 cut(s)	299
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	2 cut(s)	162, 210
MnlI	CCTC	5 cut(s)	97, 226, 234, 289, 419
MseI	TTAA	2 cut(s)	312, 435
MslI	CAYNNNNRTG	1 cut(s)	185
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	2 cut(s)	387, 474
MspR9I	CCNGG	2 cut(s)	255, 474
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	474
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	2 cut(s)	268, 289
NlaIII	CATG	3 cut(s)	146, 349, 358
NlaIV	GGNNCC	2 cut(s)	10, 396
NmuCI	GTSAC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	10, 396
PspPI	GGNCC	4 cut(s)	9, 168, 221, 395
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	312, 435
Sau3AI	GATC	2 cut(s)	268, 289
Sau96I	GGNCC	4 cut(s)	9, 168, 221, 395
ScrFI	CCNGG	2 cut(s)	255, 474
SetI	ASST	9 cut(s)	70, 137, 180, 237, 266, 318, 327, 411, 468
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	162, 210
SsiI	CCGC	3 cut(s)	43, 194, 216
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	253, 472
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	162, 210
Tru1I	TTAA	2 cut(s)	312, 435
Tru9I	TTAA	2 cut(s)	312, 435
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.