The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Chloroa_b-bind | PF00504 | 64 - 106 | 1.4e-12 | Chlorophyll A-B binding protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 98 |
| AccB1I | GGYRCC | 1 cut(s) | 328 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 182 |
| AccII | CGCG | 1 cut(s) | 282 |
| AciI | CCGC | 3 cut(s) | 240, 280, 332 |
| AclWI | GGATC | 1 cut(s) | 251 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfaI | GTAC | 2 cut(s) | 146, 167 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 182 |
| AgsI | TTSAA | 1 cut(s) | 290 |
| AluBI | AGCT | 3 cut(s) | 41, 254, 286 |
| AluI | AGCT | 3 cut(s) | 41, 254, 286 |
| Alw26I | GTCTC | 1 cut(s) | 130 |
| AlwI | GGATC | 1 cut(s) | 251 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| AoxI | GGCC | 4 cut(s) | 149, 189, 309, 401 |
| ApaI | GGGCCC | 1 cut(s) | 153 |
| ApeKI | GCWGC | 3 cut(s) | 41, 135, 316 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AspLEI | GCGC | 1 cut(s) | 99 |
| AspS9I | GGNCC | 5 cut(s) | 149, 150, 173, 190, 309 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 197 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 173 |
| BaeGI | GKGCMC | 1 cut(s) | 153 |
| BanI | GGYRCC | 1 cut(s) | 328 |
| BanII | GRGCYC | 2 cut(s) | 153, 411 |
| BbvI | GCAGC | 3 cut(s) | 28, 147, 303 |
| BccI | CCATC | 1 cut(s) | 300 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 251, 285 |
| BciVI | GTATCC | 1 cut(s) | 229 |
| BcoDI | GTCTC | 1 cut(s) | 130 |
| BfaI | CTAG | 2 cut(s) | 38, 433 |
| BfuI | GTATCC | 1 cut(s) | 229 |
| BisI | GCNGC | 4 cut(s) | 42, 136, 317, 332 |
| BlsI | GCNGC | 4 cut(s) | 43, 137, 318, 333 |
| BmcAI | AGTACT | 1 cut(s) | 167 |
| Bme18I | GGWCC | 1 cut(s) | 173 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 5 cut(s) | 149, 150, 173, 190, 309 |
| BmiI | GGNNCC | 5 cut(s) | 151, 174, 192, 330, 408 |
| BmrI | ACTGGG | 1 cut(s) | 213 |
| BmsI | GCATC | 1 cut(s) | 116 |
| BmuI | ACTGGG | 1 cut(s) | 213 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 179, 211 |
| BpmI | CTGGAG | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 1 cut(s) | 286 |
| BsaJI | CCNNGG | 1 cut(s) | 261 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 182 |
| Bse1I | ACTGG | 2 cut(s) | 211, 219 |
| Bse3DI | GCAATG | 1 cut(s) | 21 |
| BseDI | CCNNGG | 1 cut(s) | 261 |
| BseGI | GGATG | 1 cut(s) | 107 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 182 |
| BseMI | GCAATG | 1 cut(s) | 21 |
| BseMII | CTCAG | 1 cut(s) | 64 |
| BseNI | ACTGG | 2 cut(s) | 211, 219 |
| BseRI | GAGGAG | 2 cut(s) | 16, 118 |
| BseSI | GKGCMC | 1 cut(s) | 153 |
| BseXI | GCAGC | 3 cut(s) | 28, 147, 303 |
| Bsh1236I | CGCG | 1 cut(s) | 282 |
| Bsh1285I | CGRYCG | 1 cut(s) | 157 |
| BshFI | GGCC | 4 cut(s) | 151, 191, 311, 403 |
| BshNI | GGYRCC | 1 cut(s) | 328 |
| BsiEI | CGRYCG | 1 cut(s) | 157 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BsiSI | CCGG | 2 cut(s) | 132, 404 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 182 |
| BsmAI | GTCTC | 1 cut(s) | 130 |
| BsnI | GGCC | 4 cut(s) | 151, 191, 311, 403 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp120I | GGGCCC | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 2 cut(s) | 153, 411 |
| Bsp143I | GATC | 1 cut(s) | 256 |
| BspACI | CCGC | 3 cut(s) | 240, 280, 332 |
| BspANI | GGCC | 4 cut(s) | 151, 191, 311, 403 |
| BspCNI | CTCAG | 1 cut(s) | 63 |
| BspFNI | CGCG | 1 cut(s) | 282 |
| BspLI | GGNNCC | 5 cut(s) | 151, 174, 192, 330, 408 |
| BspPI | GGATC | 1 cut(s) | 251 |
| BspT107I | GGYRCC | 1 cut(s) | 328 |
| BsrDI | GCAATG | 1 cut(s) | 21 |
| BsrI | ACTGG | 2 cut(s) | 211, 219 |
| BssECI | CCNNGG | 1 cut(s) | 261 |
| BssMI | GATC | 1 cut(s) | 256 |
| Bst4CI | ACNGT | 3 cut(s) | 77, 124, 158 |
| BstC8I | GCNNGC | 2 cut(s) | 284, 336 |
| BstDEI | CTNAG | 1 cut(s) | 50 |
| BstF5I | GGATG | 1 cut(s) | 107 |
| BstFNI | CGCG | 1 cut(s) | 282 |
| BstHHI | GCGC | 1 cut(s) | 99 |
| BstKTI | GATC | 1 cut(s) | 259 |
| BstMAI | GTCTC | 1 cut(s) | 130 |
| BstMBI | GATC | 1 cut(s) | 256 |
| BstMCI | CGRYCG | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstSLI | GKGCMC | 1 cut(s) | 153 |
| BstUI | CGCG | 1 cut(s) | 282 |
| BstV1I | GCAGC | 3 cut(s) | 28, 147, 303 |
| BsuI | GTATCC | 1 cut(s) | 229 |
| BsuRI | GGCC | 4 cut(s) | 151, 191, 311, 403 |
| BtsCI | GGATG | 1 cut(s) | 107 |
| BtsIMutI | CAGTG | 1 cut(s) | 226 |
| Cac8I | GCNNGC | 2 cut(s) | 284, 336 |
| CfoI | GCGC | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 5 cut(s) | 149, 150, 173, 190, 309 |
| Csp6I | GTAC | 2 cut(s) | 145, 166 |
| CviAII | CATG | 2 cut(s) | 313, 321 |
| CviQI | GTAC | 2 cut(s) | 145, 166 |
| DdeI | CTNAG | 1 cut(s) | 50 |
| DpnI | GATC | 1 cut(s) | 258 |
| DpnII | GATC | 1 cut(s) | 256 |
| Eco24I | GRGCYC | 2 cut(s) | 153, 411 |
| Eco47I | GGWCC | 1 cut(s) | 173 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 190 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 2 cut(s) | 153, 411 |
| FaeI | CATG | 2 cut(s) | 316, 324 |
| FaiI | YATR | 4 cut(s) | 228, 314, 322, 341 |
| FatI | CATG | 2 cut(s) | 312, 320 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 136, 317, 332 |
| FokI | GGATG | 1 cut(s) | 94 |
| FriOI | GRGCYC | 2 cut(s) | 153, 411 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 136, 317, 332 |
| FspBI | CTAG | 2 cut(s) | 38, 433 |
| FspI | TGCGCA | 1 cut(s) | 98 |
| GlaI | GCGC | 1 cut(s) | 98 |
| GluI | GCNGC | 4 cut(s) | 42, 136, 317, 332 |
| GsuI | CTGGAG | 1 cut(s) | 228 |
| HaeIII | GGCC | 4 cut(s) | 151, 191, 311, 403 |
| HapII | CCGG | 2 cut(s) | 132, 404 |
| HhaI | GCGC | 1 cut(s) | 99 |
| Hin1II | CATG | 2 cut(s) | 316, 324 |
| Hin6I | GCGC | 1 cut(s) | 97 |
| HinP1I | GCGC | 1 cut(s) | 97 |
| HinfI | GANTC | 3 cut(s) | 87, 246, 371 |
| HpaII | CCGG | 2 cut(s) | 132, 404 |
| HphI | GGTGA | 2 cut(s) | 89, 197 |
| Hpy166II | GTNNAC | 1 cut(s) | 430 |
| Hpy188III | TCNNGA | 2 cut(s) | 260, 303 |
| Hpy8I | GTNNAC | 1 cut(s) | 430 |
| HpyAV | CCTTC | 2 cut(s) | 42, 74 |
| HpyCH4III | ACNGT | 3 cut(s) | 77, 124, 158 |
| HpyCH4V | TGCA | 1 cut(s) | 107 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 50 |
| Hsp92II | CATG | 2 cut(s) | 316, 324 |
| HspAI | GCGC | 1 cut(s) | 97 |
| Kzo9I | GATC | 1 cut(s) | 256 |
| LmnI | GCTCC | 1 cut(s) | 406 |
| LpnPI | CCDG | 8 cut(s) | 145, 152, 168, 192, 232, 256, 320, 417 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 147, 303 |
| LweI | GCATC | 1 cut(s) | 116 |
| MaeI | CTAG | 2 cut(s) | 38, 433 |
| MaeIII | GTNAC | 2 cut(s) | 88, 221 |
| MalI | GATC | 1 cut(s) | 258 |
| MboI | GATC | 1 cut(s) | 256 |
| MhlI | GDGCHC | 2 cut(s) | 153, 411 |
| MluCI | AATT | 1 cut(s) | 212 |
| MlyI | GAGTC | 3 cut(s) | 96, 240, 380 |
| MmeI | TCCRAC | 1 cut(s) | 80 |
| MnlI | CCTC | 6 cut(s) | 37, 139, 181, 205, 256, 417 |
| MseI | TTAA | 2 cut(s) | 72, 398 |
| MspA1I | CMGCKG | 1 cut(s) | 254 |
| MspI | CCGG | 2 cut(s) | 132, 404 |
| MvnI | CGCG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 1 cut(s) | 256 |
| NlaIII | CATG | 2 cut(s) | 316, 324 |
| NlaIV | GGNNCC | 5 cut(s) | 151, 174, 192, 330, 408 |
| NmuCI | GTSAC | 2 cut(s) | 88, 221 |
| NsbI | TGCGCA | 1 cut(s) | 98 |
| PflFI | GACNNNGTC | 1 cut(s) | 158 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 182 |
| PkrI | GCNGC | 4 cut(s) | 43, 137, 318, 333 |
| PleI | GAGTC | 3 cut(s) | 95, 240, 379 |
| PpsI | GAGTC | 3 cut(s) | 95, 240, 379 |
| PspN4I | GGNNCC | 5 cut(s) | 151, 174, 192, 330, 408 |
| PspOMI | GGGCCC | 1 cut(s) | 149 |
| PspPI | GGNCC | 5 cut(s) | 149, 150, 173, 190, 309 |
| PsyI | GACNNNGTC | 1 cut(s) | 158 |
| PvuII | CAGCTG | 1 cut(s) | 254 |
| RsaI | GTAC | 2 cut(s) | 146, 167 |
| RsaNI | GTAC | 2 cut(s) | 145, 166 |
| SaqAI | TTAA | 2 cut(s) | 72, 398 |
| SatI | GCNGC | 4 cut(s) | 42, 136, 317, 332 |
| Sau3AI | GATC | 1 cut(s) | 256 |
| Sau96I | GGNCC | 5 cut(s) | 149, 150, 173, 190, 309 |
| ScaI | AGTACT | 1 cut(s) | 167 |
| SchI | GAGTC | 3 cut(s) | 96, 240, 380 |
| SduI | GDGCHC | 2 cut(s) | 153, 411 |
| SetI | ASST | 6 cut(s) | 43, 72, 85, 204, 256, 288 |
| SfaNI | GCATC | 1 cut(s) | 116 |
| SinI | GGWCC | 1 cut(s) | 173 |
| SmlI | CTYRAG | 1 cut(s) | 301 |
| SmoI | CTYRAG | 1 cut(s) | 301 |
| Sse9I | AATT | 1 cut(s) | 212 |
| SsiI | CCGC | 3 cut(s) | 240, 280, 332 |
| SspI | AATATT | 1 cut(s) | 416 |
| SspMI | CTAG | 2 cut(s) | 38, 433 |
| TaaI | ACNGT | 3 cut(s) | 77, 124, 158 |
| TaqI | TCGA | 1 cut(s) | 85 |
| TasI | AATT | 1 cut(s) | 212 |
| TatI | WGTACW | 1 cut(s) | 165 |
| TauI | GCSGC | 1 cut(s) | 334 |
| Tru1I | TTAA | 2 cut(s) | 72, 398 |
| Tru9I | TTAA | 2 cut(s) | 72, 398 |
| TscAI | CASTG | 1 cut(s) | 226 |
| TseFI | GTSAC | 2 cut(s) | 88, 221 |
| TseI | GCWGC | 3 cut(s) | 41, 135, 316 |
| Tsp45I | GTSAC | 2 cut(s) | 88, 221 |
| TspDTI | ATGAA | 1 cut(s) | 51 |
| TspRI | CASTG | 1 cut(s) | 226 |
| Tth111I | GACNNNGTC | 1 cut(s) | 158 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 173 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XspI | CTAG | 2 cut(s) | 38, 433 |
| ZrmI | AGTACT | 1 cut(s) | 167 |