Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

54895466 .. 54896881

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0428300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTCTCTTGTCTGCAATTTGTTCAGGATCCTCTGCCAGATTTGGTGGTCCTCCTAGAAACATCTATAAGCAAAACCCAATTATTTACTATGGATGGTGACCGGTTTTCTTTAGGGTCACCGCTAGCAAGTTCCTTGGGTACATTCTCGCTAGCAACTGAGGCCAACCCTGACAAGATACATGCAGTCATAAGCATGAAATCTCTTGAGAAGAAAGTTGACTTGCAAAGCTTGCAAGGAAAGTTAACGGCACTTTCTCGATTCATCGCTAGACTCACAGACAAATGCTTACCATTCTTCAAAACAATGAAGCGGTCACATTGTAGGGTGGTAGATTGGAATCCTGATTGTGAGGCAGCACTCCAAGTCTCCAAGGTCCCAAGGAGTGCAAAGATCAGACTTCATCAAAACCCAGCTTTCAAGCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

143

Amino Acids

15.93

Weight (kDa)

9.47

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	122, 313
AclWI	GGATC	2 cut(s)	23, 36
AfaI	GTAC	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	301, 421
AluBI	AGCT	2 cut(s)	231, 416
AluI	AGCT	2 cut(s)	231, 416
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	356
AsiGI	ACCGGT	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	49, 376
AsuHPI	GGTGA	2 cut(s)	110, 111
AsuNHI	GCTAGC	2 cut(s)	124, 151
AvaII	GGWCC	2 cut(s)	49, 376
BamHI	GGATCC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	4 cut(s)	56, 125, 152, 270
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme18I	GGWCC	2 cut(s)	49, 376
BmgT120I	GGNCC	2 cut(s)	49, 376
BmiI	GGNNCC	2 cut(s)	30, 378
BmtI	GCTAGC	2 cut(s)	128, 155
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	135, 372, 380
BsaWI	WCCGGW	1 cut(s)	102
Bse118I	RCCGGY	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	135, 372, 380
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	28, 393
BspACI	CCGC	2 cut(s)	122, 313
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	30, 378
BspOI	GCTAGC	2 cut(s)	128, 155
BspPI	GGATC	2 cut(s)	23, 36
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	3 cut(s)	135, 372, 380
BssMI	GATC	2 cut(s)	28, 393
BssT1I	CCWWGG	3 cut(s)	135, 372, 380
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	126, 153, 233
BstDEI	CTNAG	1 cut(s)	159
BstEII	GGTNACC	2 cut(s)	98, 117
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	2 cut(s)	31, 396
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	28, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 232
BstNSI	RCATGY	1 cut(s)	185
BstPI	GGTNACC	2 cut(s)	98, 117
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	126, 153, 233
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	49, 376
Csp6I	GTAC	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	102
CviAII	CATG	2 cut(s)	182, 196
CviJI	RGCY	4 cut(s)	164, 231, 416, 424
CviKI_1	RGCY	4 cut(s)	164, 231, 416, 424
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	30, 395
DpnII	GATC	2 cut(s)	28, 393
Eco130I	CCWWGG	3 cut(s)	135, 372, 380
Eco47I	GGWCC	2 cut(s)	49, 376
Eco91I	GGTNACC	2 cut(s)	98, 117
EcoO109I	RGGNCCY	1 cut(s)	376
EcoO65I	GGTNACC	2 cut(s)	98, 117
EcoT14I	CCWWGG	3 cut(s)	135, 372, 380
ErhI	CCWWGG	3 cut(s)	135, 372, 380
FaeI	CATG	2 cut(s)	185, 199
FaiI	YATR	5 cut(s)	68, 92, 183, 191, 197
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	181, 195
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	4 cut(s)	56, 125, 152, 270
GluI	GCNGC	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	185, 199
HincII	GTYRAC	2 cut(s)	220, 246
HindII	GTYRAC	2 cut(s)	220, 246
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	3 cut(s)	261, 273, 340
HpaI	GTTAAC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	110, 111
Hpy166II	GTNNAC	2 cut(s)	220, 246
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	4 cut(s)	26, 206, 258, 344
Hpy8I	GTNNAC	2 cut(s)	220, 246
HpyCH4V	TGCA	5 cut(s)	16, 185, 226, 235, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 232
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	185, 199
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	28, 393
LpnPI	CCDG	6 cut(s)	11, 51, 116, 183, 357, 426
Lsp1109I	GCAGC	1 cut(s)	368
MaeI	CTAG	4 cut(s)	56, 125, 152, 270
MaeIII	GTNAC	3 cut(s)	98, 117, 315
MalI	GATC	2 cut(s)	30, 395
MboI	GATC	2 cut(s)	28, 393
MboII	GAAGA	2 cut(s)	223, 289
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	17, 80
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	4 cut(s)	42, 62, 154, 346
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	161, 232
NdeII	GATC	2 cut(s)	28, 393
NheI	GCTAGC	2 cut(s)	124, 151
NlaIII	CATG	2 cut(s)	185, 199
NlaIV	GGNNCC	2 cut(s)	30, 378
NmuCI	GTSAC	3 cut(s)	98, 117, 315
NspI	RCATGY	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	261, 340
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
PspEI	GGTNACC	2 cut(s)	98, 117
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	30, 378
PspPI	GGNCC	2 cut(s)	49, 376
PspPPI	RGGWCCY	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	2 cut(s)	28, 393
Sau96I	GGNCC	2 cut(s)	49, 376
SchI	GAGTC	1 cut(s)	267
SetI	ASST	3 cut(s)	233, 378, 418
SinI	GGWCC	2 cut(s)	49, 376
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	17, 80
SsiI	CCGC	2 cut(s)	122, 313
SspMI	CTAG	4 cut(s)	56, 125, 152, 270
StyI	CCWWGG	3 cut(s)	135, 372, 380
TaqI	TCGA	1 cut(s)	259
TasI	AATT	2 cut(s)	17, 80
TfiI	GAWTC	2 cut(s)	261, 340
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TseFI	GTSAC	3 cut(s)	98, 117, 315
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	3 cut(s)	98, 117, 315
TspDTI	ATGAA	4 cut(s)	212, 253, 323, 392
VpaK11BI	GGWCC	2 cut(s)	49, 376
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	4 cut(s)	56, 125, 152, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.