Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001857.1

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

81846 .. 82554

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001857.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgaggaagacagcaaagaagctagctgcttcatcaggcagcccctggtacggccctgaccgtgtcaagtaccttggaccattctccggtgaggctccatcttacctaaccggcgagttccctggtgactacgggtgggacaccgcagggctatcagccgacccagaaacttttgccaagaaccgtgaactcgaggttattcactccagatgggcaatgcttggggctctgggctgtgttttccctgagcttctttccagaaatggagtcaagtttggtgaagcagtgtggttcttctcatgggagctgttgagggttaccgcattgctggagggccacttggagaaatcacggacccattgtacccaggaggcagctttgatcctttggggcttgcagatgacccagaggcataatcaggcatttgcagagcttaaggtgaaagagcttaagaatggaagacttgccatgttctccatgtttggcttctttgtgcaggccattgtaaccggaaagggccctattgagaaccttgctgaccatctggctgaccctgttaacaacaatgcctggtcgtatgccaccaactttgtacctggcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

201

Amino Acids

22.34

Weight (kDa)

7.79

Isoelectric Point (pI)

25.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	144, 321
AclWI	GGATC	1 cut(s)	376
AfaI	GTAC	4 cut(s)	50, 71, 364, 594
AfiI	CCNNNNNNNGG	2 cut(s)	50, 86
AflII	CTTAAG	2 cut(s)	434, 449
AjnI	CCWGG	5 cut(s)	44, 121, 366, 569, 595
AluBI	AGCT	7 cut(s)	22, 26, 250, 307, 377, 433, 448
AluI	AGCT	7 cut(s)	22, 26, 250, 307, 377, 433, 448
AlwI	GGATC	1 cut(s)	376
AlwNI	CAGNNNCTG	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	4 cut(s)	52, 334, 498, 517
ApaI	GGGCCC	1 cut(s)	521
ApeKI	GCWGC	3 cut(s)	26, 39, 374
AspS9I	GGNCC	6 cut(s)	53, 77, 334, 354, 517, 518
AsuHPI	GGTGA	4 cut(s)	101, 137, 290, 451
AsuNHI	GCTAGC	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	77, 354
BaeGI	GKGCMC	1 cut(s)	521
BanII	GRGCYC	2 cut(s)	229, 521
BbsI	GAAGAC	2 cut(s)	14, 466
BbvI	GCAGC	3 cut(s)	13, 51, 386
BccI	CCATC	3 cut(s)	106, 204, 549
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	5 cut(s)	46, 123, 368, 571, 597
BfaI	CTAG	1 cut(s)	23
BfrI	CTTAAG	2 cut(s)	434, 449
BisI	GCNGC	3 cut(s)	27, 40, 375
BlsI	GCNGC	3 cut(s)	28, 41, 376
Bme1390I	CCNGG	5 cut(s)	46, 123, 368, 571, 597
Bme18I	GGWCC	2 cut(s)	77, 354
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	6 cut(s)	53, 77, 334, 354, 517, 518
BmiI	GGNNCC	3 cut(s)	96, 356, 519
BmrFI	CCNGG	5 cut(s)	46, 123, 368, 571, 597
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	2 cut(s)	14, 466
BpmI	CTGGAG	2 cut(s)	190, 350
Bpu10I	CCTNAGC	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	44, 73, 121, 366
BsaWI	WCCGGW	2 cut(s)	86, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 86
Bse118I	RCCGGY	1 cut(s)	110
Bse3DI	GCAATG	2 cut(s)	222, 323
BseBI	CCWGG	5 cut(s)	46, 123, 368, 571, 597
BseDI	CCNNGG	4 cut(s)	44, 73, 121, 366
BseLI	CCNNNNNNNGG	2 cut(s)	50, 86
BseMI	GCAATG	2 cut(s)	222, 323
BseMII	CTCAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	3 cut(s)	13, 51, 386
BsgI	GTGCAG	1 cut(s)	515
BshFI	GGCC	4 cut(s)	54, 336, 500, 519
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	87, 111, 510
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	50, 86
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	54, 336, 500, 519
BsoBI	CYCGRG	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	229, 521
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	2 cut(s)	144, 321
BspANI	GGCC	4 cut(s)	54, 336, 500, 519
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	96, 356, 519
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	376
BspTI	CTTAAG	2 cut(s)	434, 449
BsrDI	GCAATG	2 cut(s)	222, 323
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	44, 73, 121, 366
BssMI	GATC	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	5 cut(s)	46, 123, 368, 571, 597
Bst4CI	ACNGT	2 cut(s)	62, 185
BstAFI	CTTAAG	2 cut(s)	434, 449
BstC8I	GCNNGC	3 cut(s)	24, 395, 498
BstDEI	CTNAG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	316
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstNI	CCWGG	5 cut(s)	46, 123, 368, 571, 597
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	5 cut(s)	44, 121, 366, 569, 595
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	13, 51, 386
BstV2I	GAAGAC	2 cut(s)	14, 466
BsuRI	GGCC	4 cut(s)	54, 336, 500, 519
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	24, 395, 498
CaiI	CAGNNNCTG	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	6 cut(s)	53, 77, 334, 354, 517, 518
Csp6I	GTAC	4 cut(s)	49, 70, 363, 593
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	3 cut(s)	300, 469, 478
CviQI	GTAC	4 cut(s)	49, 70, 363, 593
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	2 cut(s)	229, 521
Eco47I	GGWCC	2 cut(s)	77, 354
Eco88I	CYCGRG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	316
EcoO109I	RGGNCCY	2 cut(s)	517, 518
EcoO65I	GGTNACC	1 cut(s)	316
EcoRII	CCWGG	5 cut(s)	44, 121, 366, 569, 595
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	2 cut(s)	229, 521
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	3 cut(s)	303, 472, 481
FaiI	YATR	5 cut(s)	301, 414, 470, 479, 579
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	299, 468, 477
Fnu4HI	GCNGC	3 cut(s)	27, 40, 375
FriOI	GRGCYC	2 cut(s)	229, 521
Fsp4HI	GCNGC	3 cut(s)	27, 40, 375
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	27, 40, 375
GsuI	CTGGAG	2 cut(s)	190, 350
HaeIII	GGCC	4 cut(s)	54, 336, 500, 519
HapII	CCGG	3 cut(s)	87, 111, 510
Hin1II	CATG	3 cut(s)	303, 472, 481
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	1 cut(s)	267
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	3 cut(s)	87, 111, 510
HphI	GGTGA	4 cut(s)	101, 137, 290, 451
Hpy166II	GTNNAC	2 cut(s)	188, 559
Hpy188III	TCNNGA	2 cut(s)	207, 258
Hpy8I	GTNNAC	2 cut(s)	188, 559
HpyCH4III	ACNGT	2 cut(s)	62, 185
HpyCH4V	TGCA	3 cut(s)	397, 428, 496
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	303, 472, 481
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	100, 304
Lsp1109I	GCAGC	3 cut(s)	13, 51, 386
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	125, 316, 505
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	3 cut(s)	19, 286, 471
MhlI	GDGCHC	2 cut(s)	229, 521
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	85, 187, 306, 325, 364, 402
MseI	TTAA	3 cut(s)	435, 450, 558
MspCI	CTTAAG	2 cut(s)	434, 449
MspI	CCGG	3 cut(s)	87, 111, 510
MspR9I	CCNGG	5 cut(s)	46, 123, 368, 571, 597
MvaI	CCWGG	5 cut(s)	46, 123, 368, 571, 597
NdeII	GATC	1 cut(s)	381
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	303, 472, 481
NlaIV	GGNNCC	3 cut(s)	96, 356, 519
NmuCI	GTSAC	1 cut(s)	125
PaeR7I	CTCGAG	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	28, 41, 376
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp6I	CCWGG	5 cut(s)	44, 121, 366, 569, 595
PspEI	GGTNACC	1 cut(s)	316
PspGI	CCWGG	5 cut(s)	44, 121, 366, 569, 595
PspN4I	GGNNCC	3 cut(s)	96, 356, 519
PspOMI	GGGCCC	1 cut(s)	517
PspPI	GGNCC	6 cut(s)	53, 77, 334, 354, 517, 518
PspXI	VCTCGAGB	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	4 cut(s)	50, 71, 364, 594
RsaNI	GTAC	4 cut(s)	49, 70, 363, 593
SaqAI	TTAA	3 cut(s)	435, 450, 558
SatI	GCNGC	3 cut(s)	27, 40, 375
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	6 cut(s)	53, 77, 334, 354, 517, 518
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	5 cut(s)	46, 123, 368, 571, 597
SduI	GDGCHC	2 cut(s)	229, 521
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	77, 354
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	3 cut(s)	191, 434, 449
SmoI	CTYRAG	3 cut(s)	191, 434, 449
SsiI	CCGC	2 cut(s)	144, 321
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	5 cut(s)	44, 121, 366, 569, 595
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	62, 185
TaqI	TCGA	1 cut(s)	192
Tru1I	TTAA	3 cut(s)	435, 450, 558
Tru9I	TTAA	3 cut(s)	435, 450, 558
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	3 cut(s)	26, 39, 374
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	291
Tth111I	GACNNNGTC	1 cut(s)	62
Vha464I	CTTAAG	2 cut(s)	434, 449
VpaK11BI	GGWCC	2 cut(s)	77, 354
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.