Rroxscaffold_2G00092910

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000275
Physical Location & Seq
Reverse (-)
14355257 .. 14357605
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092910.1

Sequence Viewer

Length: 456 bp
ATGGCAACCTCTTCAATCCAGCAGTCAGCATTTTCCGGCCAGACCATTCTAAGCAATCGAATGAGCTCATCCAAAAGATTGGCGGCCTTGGTTGTGCTCATGGGATTTGTTGAAGGATACAGAGTTGGTGGAGGACCACTTGGTGGAGACAATTTAGTGTCTTTGTTGGATACCCACCACTACACTGGAATTTCCCCACTTGGTGAAGGTCCGGATCCACCTTACCCTGGAGGATCATTTGACCCACTTGGACACGCTGACGATCCTGAAGCCTTTGCTGAACTGAAGGTGAAGGAAATCAAGAATGGGCGGTTGGCAATGACCTCAATGTTTGGATTCTTTGTTCAGGCTATTGTAACTGGAAAAGGGCCAGTTGAGAAACTCTATGACCACGTTGCTGATCCCGTAGCCGACAATGCATGTGCATACGCTACCAACTTCGTCCCCGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

151

Amino Acids

15.86

Weight (kDa)

5.44

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 23 - 118 1.1e-19 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 2 cut(s) 83, 310
AclWI GGATC 5 cut(s) 209, 222, 241, 257, 395
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 2 cut(s) 288, 305
AdeI CACNNNGTG 2 cut(s) 143, 203
AfiI CCNNNNNNNGG 2 cut(s) 143, 227
AgsI TTSAA 2 cut(s) 15, 113
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AloI GAACNNNNNNTCC 2 cut(s) 327, 359
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 2 cut(s) 68, 99
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 5 cut(s) 209, 222, 241, 257, 395
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 3 cut(s) 37, 84, 368
ApoI RAATTY 1 cut(s) 189
AspS9I GGNCC 3 cut(s) 134, 209, 368
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 215, 301
AvaII GGWCC 2 cut(s) 134, 209
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 2 cut(s) 68, 99
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 2 cut(s) 110, 163
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 141
BfuI GTATCC 2 cut(s) 110, 163
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 228, 447
Bme18I GGWCC 2 cut(s) 134, 209
BmgT120I GGNCC 3 cut(s) 134, 209, 368
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 228, 447
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 87, 226, 445
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 227
Bse1I ACTGG 3 cut(s) 190, 364, 371
Bse3DI GCAATG 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 87, 226, 445
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 143, 227
BseMI GCAATG 1 cut(s) 324
BseNI ACTGG 3 cut(s) 190, 364, 371
BshFI GGCC 3 cut(s) 39, 86, 370
BsiHKAI GWGCWC 2 cut(s) 68, 99
BsiSI CCGG 3 cut(s) 36, 212, 447
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 143, 227
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 3 cut(s) 39, 86, 370
Bsp1286I GDGCHC 2 cut(s) 68, 99
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 4 cut(s) 214, 233, 262, 400
BspACI CCGC 2 cut(s) 83, 310
BspANI GGCC 3 cut(s) 39, 86, 370
BspEI TCCGGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 5 cut(s) 209, 222, 241, 257, 395
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 3 cut(s) 190, 364, 371
BssECI CCNNGG 3 cut(s) 87, 226, 445
BssMI GATC 4 cut(s) 214, 233, 262, 400
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 4 cut(s) 217, 236, 265, 403
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 4 cut(s) 214, 233, 262, 400
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 2 cut(s) 226, 445
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 2 cut(s) 79, 185
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 2 cut(s) 110, 163
BsuRI GGCC 3 cut(s) 39, 86, 370
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 3 cut(s) 134, 209, 368
CviAII CATG 2 cut(s) 100, 420
CviJI RGCY 7 cut(s) 39, 66, 86, 272, 350, 370, 410
CviKI_1 RGCY 7 cut(s) 39, 66, 86, 272, 350, 370, 410
DdeI CTNAG 1 cut(s) 50
DpnI GATC 4 cut(s) 216, 235, 264, 402
DpnII GATC 4 cut(s) 214, 233, 262, 400
DraIII CACNNNGTG 2 cut(s) 143, 203
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 134, 209
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 288, 305
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 103, 423
FaiI YATR 4 cut(s) 101, 387, 421, 427
FaqI GGGAC 1 cut(s) 428
FatI CATG 2 cut(s) 99, 419
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 3 cut(s) 39, 86, 370
HapII CCGG 3 cut(s) 36, 212, 447
Hin1II CATG 2 cut(s) 103, 423
HinfI GANTC 1 cut(s) 336
HpaII CCGG 3 cut(s) 36, 212, 447
HphI GGTGA 2 cut(s) 215, 301
Hpy188III TCNNGA 3 cut(s) 212, 266, 301
HpyAV CCTTC 4 cut(s) 107, 200, 280, 286
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 2 cut(s) 419, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 2 cut(s) 103, 423
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 4 cut(s) 214, 233, 262, 400
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 355
MalI GATC 4 cut(s) 216, 235, 264, 402
MboI GATC 4 cut(s) 214, 233, 262, 400
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 68, 99
MluCI AATT 2 cut(s) 151, 189
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 19, 125, 224, 334
Mph1103I ATGCAT 1 cut(s) 421
MroI TCCGGA 1 cut(s) 211
MspI CCGG 3 cut(s) 36, 212, 447
MspR9I CCNGG 2 cut(s) 228, 447
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 416
NciI CCSGG 1 cut(s) 447
NdeII GATC 4 cut(s) 214, 233, 262, 400
NlaIII CATG 2 cut(s) 103, 423
NlaIV GGNNCC 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 1 cut(s) 423
PfeI GAWTC 1 cut(s) 336
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 3 cut(s) 134, 209, 368
PsuI RGATCY 1 cut(s) 214
SacI GAGCTC 1 cut(s) 68
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 4 cut(s) 214, 233, 262, 400
Sau96I GGNCC 3 cut(s) 134, 209, 368
ScrFI CCNGG 2 cut(s) 228, 447
SduI GDGCHC 2 cut(s) 68, 99
SetI ASST 7 cut(s) 11, 68, 211, 223, 291, 326, 396
SinI GGWCC 2 cut(s) 134, 209
Sse9I AATT 2 cut(s) 151, 189
SsiI CCGC 2 cut(s) 83, 310
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 226, 445
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 58
TasI AATT 2 cut(s) 151, 189
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 336
TscAI CASTG 1 cut(s) 190
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 134, 209
XapI RAATTY 1 cut(s) 189
XceI RCATGY 1 cut(s) 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.