Rmu_co8294383.1_g000001

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8294383.1
OG0000275
Physical Location & Seq
Forward (+)
1 .. 445
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8294383.1_g000001.1.cds

Sequence Viewer

Length: 385 bp
gtccaagaatggtgtcaagttcggcgaggcagtttggttcaaggcagggtctcaaatcttctcagaaggtggccttgactatcttggcaacccaaacctcgtccatgcacagagcatcctagcaatctgggctgtccaggttgtgctcatgggatttgttgaaggatacagagttggtggaggaccacttggtgaaggtctggattcactttaccctggaggagcctttgatccacttggattggctgatgatcctgaagcctttgctgaactgaaggctattgtaactggaaagggacctgttgagaacctctttgaccatgttgctgatccagtggctaacaatgcatggtcttatgccaccaacttcgtccccggaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

127

Amino Acids

13.31

Weight (kDa)

4.52

Isoelectric Point (pI)

15.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 225, 246, 324
AcuI CTGAAG 2 cut(s) 277, 294
AdeI CACNNNGTG 1 cut(s) 192
AgsI TTSAA 2 cut(s) 41, 162
AjnI CCWGG 2 cut(s) 136, 215
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 3 cut(s) 225, 246, 324
AoxI GGCC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 183, 297
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 204
AvaII GGWCC 2 cut(s) 183, 297
Bbv12I GWGCWC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 138, 217
BciVI GTATCC 1 cut(s) 159
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 120
BfuI GTATCC 1 cut(s) 159
Bme1390I CCNGG 3 cut(s) 138, 217, 376
Bme18I GGWCC 2 cut(s) 183, 297
BmgT120I GGNCC 2 cut(s) 183, 297
BmiI GGNNCC 2 cut(s) 224, 298
BmrFI CCNGG 3 cut(s) 138, 217, 376
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 215, 374
Bse1I ACTGG 2 cut(s) 293, 333
BseBI CCWGG 2 cut(s) 138, 217
BseDI CCNNGG 2 cut(s) 215, 374
BseGI GGATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 293, 333
BseRI GAGGAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 310, 357
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 310, 357
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 3 cut(s) 230, 251, 329
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 224, 298
BspPI GGATC 3 cut(s) 225, 246, 324
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 293, 333
BssECI CCNNGG 2 cut(s) 215, 374
BssMI GATC 3 cut(s) 230, 251, 329
Bst2UI CCWGG 2 cut(s) 138, 217
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 233, 254, 332
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 230, 251, 329
BstMWI GCNNNNNNNGC 2 cut(s) 129, 345
BstNI CCWGG 2 cut(s) 138, 217
BstSCI CCNGG 3 cut(s) 136, 215, 374
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 183, 297
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 4 cut(s) 105, 149, 321, 349
CviJI RGCY 7 cut(s) 73, 132, 225, 246, 261, 279, 339
CviKI_1 RGCY 7 cut(s) 73, 132, 225, 246, 261, 279, 339
DdeI CTNAG 1 cut(s) 62
DpnI GATC 3 cut(s) 232, 253, 331
DpnII GATC 3 cut(s) 230, 251, 329
DraIII CACNNNGTG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 183, 297
Eco57I CTGAAG 2 cut(s) 277, 294
EcoO109I RGGNCCY 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 136, 215
EcoT22I ATGCAT 1 cut(s) 350
FaeI CATG 4 cut(s) 108, 152, 324, 352
FaiI YATR 5 cut(s) 106, 150, 322, 350, 358
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 2 cut(s) 310, 357
FatI CATG 4 cut(s) 104, 148, 320, 348
FokI GGATG 1 cut(s) 102
FspBI CTAG 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 376
Hin1II CATG 4 cut(s) 108, 152, 324, 352
HinfI GANTC 1 cut(s) 204
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 201, 255
HpyAV CCTTC 4 cut(s) 60, 156, 189, 269
HpyCH4V TGCA 2 cut(s) 108, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 345
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 4 cut(s) 108, 152, 324, 352
Kzo9I GATC 3 cut(s) 230, 251, 329
LmnI GCTCC 1 cut(s) 222
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 284
MalI GATC 3 cut(s) 232, 253, 331
MboI GATC 3 cut(s) 230, 251, 329
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 148
MnlI CCTC 5 cut(s) 20, 108, 174, 213, 321
Mph1103I ATGCAT 1 cut(s) 350
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 3 cut(s) 138, 217, 376
MvaI CCWGG 2 cut(s) 138, 217
MwoI GCNNNNNNNGC 2 cut(s) 129, 345
NciI CCSGG 1 cut(s) 376
NdeII GATC 3 cut(s) 230, 251, 329
NlaIII CATG 4 cut(s) 108, 152, 324, 352
NlaIV GGNNCC 2 cut(s) 224, 298
NsiI ATGCAT 1 cut(s) 350
PfeI GAWTC 1 cut(s) 204
PpuMI RGGWCCY 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 136, 215
PspGI CCWGG 2 cut(s) 136, 215
PspN4I GGNNCC 2 cut(s) 224, 298
PspPI GGNCC 2 cut(s) 183, 297
PspPPI RGGWCCY 1 cut(s) 297
Sau3AI GATC 3 cut(s) 230, 251, 329
Sau96I GGNCC 2 cut(s) 183, 297
ScrFI CCNGG 3 cut(s) 138, 217, 376
SduI GDGCHC 1 cut(s) 148
SetI ASST 6 cut(s) 71, 100, 142, 200, 302, 313
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 2 cut(s) 183, 297
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 136, 215, 374
TfiI GAWTC 1 cut(s) 204
TscAI CASTG 1 cut(s) 340
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 183, 297
XspI CTAG 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.