Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

73852365 .. 73853422

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGCGCGGTTGAAGGCTATAGAATTGCCCGTGGGCCTCTTGACCCATTGTACCCTGGAGGGAGCTTTGACCGATTAGGACTTCCCGAAGATCCAGAGGCATCTGCAGAACTTAGGGTGAAGGAGCTAAAGAATGGGAGATTAGCCATGTTTTCTATGTTCGGGTTTTTCGTGCAAGGCATTGTCACCGGAAAGGGACCAATCGAAAACCTCGCCGACCATTTGGCTGACCCTGTTAACAACAATACTTGGTCATATGCGACAAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

94

Amino Acids

10.2

Weight (kDa)

5.24

Isoelectric Point (pI)

13.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	1 - 60	1.2e-15	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	66, 127
AluI	AGCT	2 cut(s)	66, 127
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	35, 197
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	130, 178
AvaII	GGWCC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	19, 105
Bme1390I	CCNGG	2 cut(s)	57, 276
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	35, 197
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	57, 276
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	31, 55
BsaWI	WCCGGW	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	31, 55
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	189, 276
BslFI	GGGAC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	31, 55
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	55, 274
BstSFI	CTRYAG	2 cut(s)	19, 105
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	35, 197
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	18, 37, 66, 127, 146, 227
CviKI_1	RGCY	6 cut(s)	18, 37, 66, 127, 146, 227
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	151
FaiI	YATR	5 cut(s)	21, 149, 158, 256, 258
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	1 cut(s)	147
FauNDI	CATATG	1 cut(s)	256
GlaI	GCGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	189, 276
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	189, 276
HphI	GGTGA	2 cut(s)	130, 178
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	41, 86, 95
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	8, 115
HpyCH4V	TGCA	2 cut(s)	107, 175
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	6
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	63, 124
LpnPI	CCDG	5 cut(s)	42, 69, 108, 202, 246
LweI	GCATC	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	24
MnlI	CCTC	4 cut(s)	48, 53, 91, 221
MseI	TTAA	1 cut(s)	237
MspI	CCGG	2 cut(s)	189, 276
MspR9I	CCNGG	2 cut(s)	57, 276
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	8
NciI	CCSGG	1 cut(s)	276
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	35, 197
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	35, 197
ScrFI	CCNGG	2 cut(s)	57, 276
SetI	ASST	3 cut(s)	68, 129, 213
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	19, 105
SinI	GGWCC	1 cut(s)	197
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	55, 274
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.