Rmu_sc0005294.1_g000040

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005294.1
Physical Location & Seq
Forward (+)
176981 .. 177769
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005294.1_g000040.1.cds

Sequence Viewer

Length: 789 bp
atgtctctgtcctctccttctctggctggtcaagctgtgcagctcagtccagctgcatctaacctcctcggtgagggcagaatcagcatgcgcaaatccgcagccaagtccaagaatgtgtcgtctggcagcccttggtacggcccagaccgtgtcaagtacttggggccattctccggtgaggctccatcttacctcactggagagtttcccggtgactacggttgggacacagctgggctctcagctgatcccgagacctttgccaagaaccgtgagctcgaggtcatccattcaagatgggccatgctcggtgctctaggatgtgtcttccctgaactcctagctcgtaacggagtcaagttcggagaagctgtttggttcaaggctggagcccagatattcagtgaggggggactagactacttgggaaacccaagcttagtccacgctcaaagcattttggcaatctgggcaacacaagttatcttgatgggtgcagttgaaggctacagaattgcgggagggcctctcggtgaggtagtagacccattgtaccccggtgggagctttgaccccttagggcttgcagacgatcctgaggcttttgctgagcttaaggtgaaggagctcaaaaacggaagactggccatgttttccatgttcggattcttcgtacaagctattgttaccggaaagggaccgattgagaacctagctgaccacttggctgaccctgttaacaacaatgcttggtcatatgccacaaactttgttcccggaaagtga

Protein Analysis

262

Amino Acids

27.8

Weight (kDa)

5.14

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
AccI GTMKAC 1 cut(s) 546
AciI CCGC 2 cut(s) 99, 521
AclWI GGATC 2 cut(s) 245, 590
AcoI YGGCCR 1 cut(s) 648
AfaI GTAC 4 cut(s) 140, 161, 557, 678
AfiI CCNNNNNNNGG 3 cut(s) 73, 140, 176
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 3 cut(s) 297, 385, 506
Alw21I GWGCWC 3 cut(s) 282, 319, 633
Alw26I GTCTC 2 cut(s) 9, 251
AlwI GGATC 2 cut(s) 245, 590
Ama87I CYCGRG 2 cut(s) 254, 281
AoxI GGCC 5 cut(s) 142, 167, 303, 527, 648
ApeKI GCWGC 4 cut(s) 40, 53, 101, 129
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 5 cut(s) 143, 167, 303, 527, 701
AsuC2I CCSGG 3 cut(s) 213, 561, 780
AsuHPI GGTGA 5 cut(s) 83, 191, 227, 548, 634
AvaI CYCGRG 2 cut(s) 254, 281
AvaII GGWCC 1 cut(s) 701
AxyI CCTNAGG 2 cut(s) 580, 600
BalI TGGCCA 1 cut(s) 650
BanII GRGCYC 4 cut(s) 243, 282, 397, 633
BbsI GAAGAC 2 cut(s) 322, 649
Bbv12I GWGCWC 3 cut(s) 282, 319, 633
BbvI GCAGC 4 cut(s) 40, 52, 113, 141
BccI CCATC 3 cut(s) 196, 294, 487
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BcnI CCSGG 3 cut(s) 213, 561, 780
BcoDI GTCTC 2 cut(s) 9, 251
BfaI CTAG 4 cut(s) 320, 344, 419, 716
BfmI CTRYAG 1 cut(s) 511
BfrI CTTAAG 1 cut(s) 617
BisI GCNGC 4 cut(s) 41, 54, 102, 130
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 4 cut(s) 42, 55, 103, 131
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 3 cut(s) 213, 561, 780
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 2 cut(s) 254, 281
BmgT120I GGNCC 5 cut(s) 143, 167, 303, 527, 701
BmiI GGNNCC 4 cut(s) 168, 186, 394, 702
BmrFI CCNGG 3 cut(s) 213, 561, 780
BmsI GCATC 1 cut(s) 65
BpiI GAAGAC 2 cut(s) 322, 649
BplI GAGNNNNNCTC 2 cut(s) 516, 548
BpmI CTGGAG 2 cut(s) 222, 411
Bpu1102I GCTNAGC 1 cut(s) 612
BpuMI CCSGG 3 cut(s) 213, 561, 780
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 67, 134, 559
BsaWI WCCGGW 2 cut(s) 176, 692
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 140, 176
Bse1I ACTGG 2 cut(s) 205, 651
Bse21I CCTNAGG 2 cut(s) 580, 600
BseDI CCNNGG 3 cut(s) 67, 134, 559
BseGI GGATG 2 cut(s) 288, 329
BseLI CCNNNNNNNGG 3 cut(s) 73, 140, 176
BseMII CTCAG 4 cut(s) 58, 258, 591, 603
BseNI ACTGG 2 cut(s) 205, 651
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 40, 52, 113, 141
BseYI CCCAGC 1 cut(s) 236
BsgI GTGCAG 2 cut(s) 59, 519
BshFI GGCC 5 cut(s) 144, 169, 305, 529, 650
BsiHKAI GWGCWC 3 cut(s) 282, 319, 633
BsiHKCI CYCGRG 2 cut(s) 254, 281
BsiSI CCGG 5 cut(s) 177, 213, 561, 693, 780
BslFI GGGAC 3 cut(s) 242, 429, 714
BslI CCNNNNNNNGG 3 cut(s) 73, 140, 176
BsmAI GTCTC 2 cut(s) 9, 251
BsmFI GGGAC 3 cut(s) 242, 429, 714
BsnI GGCC 5 cut(s) 144, 169, 305, 529, 650
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 2 cut(s) 254, 281
Bsp1286I GDGCHC 5 cut(s) 243, 282, 319, 397, 633
Bsp143I GATC 2 cut(s) 250, 595
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 2 cut(s) 99, 521
BspANI GGCC 5 cut(s) 144, 169, 305, 529, 650
BspCNI CTCAG 4 cut(s) 57, 257, 592, 604
BspLI GGNNCC 4 cut(s) 168, 186, 394, 702
BspPI GGATC 2 cut(s) 245, 590
BspTI CTTAAG 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 2 cut(s) 205, 651
BssECI CCNNGG 3 cut(s) 67, 134, 559
BssMI GATC 2 cut(s) 250, 595
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 152, 224, 275
BstAFI CTTAAG 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 89, 588
BstDEI CTNAG 6 cut(s) 44, 244, 442, 580, 600, 612
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 288, 329
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 253, 598
BstMAI GTCTC 2 cut(s) 9, 251
BstMBI GATC 2 cut(s) 250, 595
BstMWI GCNNNNNNNGC 3 cut(s) 32, 84, 473
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 211, 559, 778
BstSFI CTRYAG 1 cut(s) 511
BstV1I GCAGC 4 cut(s) 40, 52, 113, 141
BstV2I GAAGAC 2 cut(s) 322, 649
Bsu36I CCTNAGG 2 cut(s) 580, 600
BsuRI GGCC 5 cut(s) 144, 169, 305, 529, 650
BtsCI GGATG 2 cut(s) 288, 329
BtsIMutI CAGTG 2 cut(s) 198, 412
Cac8I GCNNGC 2 cut(s) 89, 588
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 5 cut(s) 143, 167, 303, 527, 701
Csp6I GTAC 4 cut(s) 139, 160, 556, 677
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 4 cut(s) 88, 307, 652, 661
CviQI GTAC 4 cut(s) 139, 160, 556, 677
DdeI CTNAG 6 cut(s) 44, 244, 442, 580, 600, 612
DpnI GATC 2 cut(s) 252, 597
DpnII GATC 2 cut(s) 250, 595
EaeI YGGCCR 1 cut(s) 648
Ecl136II GAGCTC 2 cut(s) 280, 631
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 4 cut(s) 243, 282, 397, 633
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 2 cut(s) 280, 631
Eco81I CCTNAGG 2 cut(s) 580, 600
Eco88I CYCGRG 2 cut(s) 254, 281
EcoICRI GAGCTC 2 cut(s) 280, 631
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 4 cut(s) 243, 282, 397, 633
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 4 cut(s) 91, 310, 655, 664
FaiI YATR 6 cut(s) 89, 308, 653, 662, 760, 762
FaqI GGGAC 3 cut(s) 242, 429, 714
FatI CATG 4 cut(s) 87, 306, 651, 660
FauI CCCGC 1 cut(s) 514
FauNDI CATATG 1 cut(s) 760
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 4 cut(s) 41, 54, 102, 130
FokI GGATG 2 cut(s) 275, 336
FriOI GRGCYC 4 cut(s) 243, 282, 397, 633
Fsp4HI GCNGC 4 cut(s) 41, 54, 102, 130
FspBI CTAG 4 cut(s) 320, 344, 419, 716
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 41, 54, 102, 130
GsaI CCCAGC 1 cut(s) 240
GsuI CTGGAG 2 cut(s) 222, 411
HaeIII GGCC 5 cut(s) 144, 169, 305, 529, 650
HapII CCGG 5 cut(s) 177, 213, 561, 693, 780
HhaI GCGC 1 cut(s) 93
Hin1II CATG 4 cut(s) 91, 310, 655, 664
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 3 cut(s) 81, 357, 669
HpaI GTTAAC 1 cut(s) 742
HpaII CCGG 5 cut(s) 177, 213, 561, 693, 780
HphI GGTGA 5 cut(s) 83, 191, 227, 548, 634
Hpy166II GTNNAC 3 cut(s) 448, 547, 742
Hpy188I TCNGA 2 cut(s) 368, 668
Hpy188III TCNNGA 4 cut(s) 254, 297, 490, 599
Hpy8I GTNNAC 3 cut(s) 448, 547, 742
HpyAV CCTTC 3 cut(s) 27, 500, 619
HpyCH4III ACNGT 3 cut(s) 152, 224, 275
HpyCH4V TGCA 4 cut(s) 40, 56, 500, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 84, 473
HpyF3I CTNAG 6 cut(s) 44, 244, 442, 580, 600, 612
Hsp92II CATG 4 cut(s) 91, 310, 655, 664
HspAI GCGC 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 742
Kzo9I GATC 2 cut(s) 250, 595
LmnI GCTCC 4 cut(s) 190, 392, 567, 628
Lsp1109I GCAGC 4 cut(s) 40, 52, 113, 141
LweI GCATC 1 cut(s) 65
MaeI CTAG 4 cut(s) 320, 344, 419, 716
MaeIII GTNAC 3 cut(s) 215, 350, 688
MalI GATC 2 cut(s) 252, 597
MboI GATC 2 cut(s) 250, 595
MboII GAAGA 3 cut(s) 322, 654, 664
MhlI GDGCHC 5 cut(s) 243, 282, 319, 397, 633
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 1 cut(s) 516
MluNI TGGCCA 1 cut(s) 650
MlyI GAGTC 1 cut(s) 366
Mox20I TGGCCA 1 cut(s) 650
MscI TGGCCA 1 cut(s) 650
MseI TTAA 2 cut(s) 618, 741
Msp20I TGGCCA 1 cut(s) 650
MspA1I CMGCKG 3 cut(s) 53, 236, 248
MspCI CTTAAG 1 cut(s) 617
MspI CCGG 5 cut(s) 177, 213, 561, 693, 780
MspR9I CCNGG 3 cut(s) 213, 561, 780
MwoI GCNNNNNNNGC 3 cut(s) 32, 84, 473
NciI CCSGG 3 cut(s) 213, 561, 780
NdeI CATATG 1 cut(s) 760
NdeII GATC 2 cut(s) 250, 595
NlaIII CATG 4 cut(s) 91, 310, 655, 664
NlaIV GGNNCC 4 cut(s) 168, 186, 394, 702
NmuCI GTSAC 1 cut(s) 215
NsbI TGCGCA 1 cut(s) 92
NspI RCATGY 1 cut(s) 91
PaeI GCATGC 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PfeI GAWTC 2 cut(s) 81, 669
PflFI GACNNNGTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 4 cut(s) 42, 55, 103, 131
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp124BI GAGCTC 2 cut(s) 282, 633
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 168, 186, 394, 702
PspPI GGNCC 5 cut(s) 143, 167, 303, 527, 701
PspXI VCTCGAGB 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 3 cut(s) 53, 236, 248
RsaI GTAC 4 cut(s) 140, 161, 557, 678
RsaNI GTAC 4 cut(s) 139, 160, 556, 677
SacI GAGCTC 2 cut(s) 282, 633
SaqAI TTAA 2 cut(s) 618, 741
SatI GCNGC 4 cut(s) 41, 54, 102, 130
Sau3AI GATC 2 cut(s) 250, 595
Sau96I GGNCC 5 cut(s) 143, 167, 303, 527, 701
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 3 cut(s) 213, 561, 780
SduI GDGCHC 5 cut(s) 243, 282, 319, 397, 633
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 281, 617
SmoI CTYRAG 2 cut(s) 281, 617
SphI GCATGC 1 cut(s) 91
Sse9I AATT 1 cut(s) 516
SsiI CCGC 2 cut(s) 99, 521
SspMI CTAG 4 cut(s) 320, 344, 419, 716
SstI GAGCTC 2 cut(s) 282, 633
StyD4I CCNGG 3 cut(s) 211, 559, 778
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 3 cut(s) 152, 224, 275
TaqI TCGA 1 cut(s) 282
TaqII GACCGA 1 cut(s) 718
TasI AATT 1 cut(s) 516
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 2 cut(s) 81, 669
Tru1I TTAA 2 cut(s) 618, 741
Tru9I TTAA 2 cut(s) 618, 741
TscAI CASTG 2 cut(s) 205, 412
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 4 cut(s) 40, 53, 101, 129
Tsp45I GTSAC 1 cut(s) 215
TspGWI ACGGA 2 cut(s) 369, 654
TspRI CASTG 2 cut(s) 205, 412
Tth111I GACNNNGTC 1 cut(s) 152
Vha464I CTTAAG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 701
XagI CCTNNNNNAGG 1 cut(s) 71
XceI RCATGY 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 4 cut(s) 320, 344, 419, 716
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.