Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

58144927 .. 58145154

Gene Structure 228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTCAATGCTCAAAGCATTTCGGCAATTTGTGTGACACAAGTTATCTTGATGGGTGCGGTTGAAGGCAACAGAATTGCCGGTGGACCTCTCCGTGAGGTGATAGACCCACTATATCCAGGTGGGAGTTTGGATCCATTAGGTCTTGCTGAAGATCCAGAAGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAGAATAGGAGATTGGCCATGTTATCCATGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

75

Amino Acids

8.07

Weight (kDa)

4.89

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	5 - 75	1.3e-14	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	3 cut(s)	128, 141, 149
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	171
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	7, 65
AjnI	CCWGG	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	3 cut(s)	164, 175, 190
AluI	AGCT	3 cut(s)	164, 175, 190
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	128, 141, 149
AoxI	GGCC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	112, 193
AvaII	GGWCC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	176
BlpI	GCTNAGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	81
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	133, 154
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	128, 141, 149
BspTI	CTTAAG	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	2 cut(s)	133, 154
Bst2UI	CCWGG	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	136, 157
BstMBI	GATC	2 cut(s)	133, 154
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	133, 154
BstYI	RGATCY	2 cut(s)	133, 154
BsuRI	GGCC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	86
CviAII	CATG	2 cut(s)	211, 220
CviJI	RGCY	4 cut(s)	164, 175, 190, 209
CviKI_1	RGCY	4 cut(s)	164, 175, 190, 209
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	135, 156
DpnII	GATC	2 cut(s)	133, 154
EaeI	YGGCCR	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	214, 223
FaiI	YATR	3 cut(s)	115, 212, 221
FatI	CATG	2 cut(s)	210, 219
FriOI	GRGCYC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	214, 223
HindIII	AAGCTT	1 cut(s)	162
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	112, 193
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	3 cut(s)	49, 158, 193
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	59, 178
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	214, 223
Kzo9I	GATC	2 cut(s)	133, 154
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	94, 105, 132, 171
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	135, 156
MboI	GATC	2 cut(s)	133, 154
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	2 cut(s)	133, 154
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	27, 75
MluNI	TGGCCA	1 cut(s)	209
MnlI	CCTC	2 cut(s)	91, 99
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	133, 154
NlaIII	CATG	2 cut(s)	214, 223
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	133, 154
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	133, 154
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	8 cut(s)	91, 102, 124, 145, 166, 177, 183, 192
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	176, 191
SmoI	CTYRAG	2 cut(s)	176, 191
Sse9I	AATT	2 cut(s)	27, 75
SsiI	CCGC	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	118
TasI	AATT	2 cut(s)	27, 75
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	83
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.