Rh3CG308700

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000275
Physical Location & Seq
Forward (+)
32263266 .. 32263748
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG308700.1

Sequence Viewer

Length: 483 bp
ATGCTTGGGGCTCTGGGCTGTGTTTTCCCTGAGCTTCTTTCCAGAAACGGAGTCAAGTTTGGTGAAGCAGTGTGGTTCAAAGCTGGAGCTCAGATCTTCAGCGAGGGTGGCCTGGACTACCTTGGAAACCCAAGCTTAGTTCATGCACAGAGCATCTTAGCAATATGGGCAACCCAGGTTCTTCTCATGGGAGCTGTTGAGGGTTACCGCATTGCTGGAGGGCCACTTGGAGAAATCACCGACCCATTGTACCCAGGAGGCAGCTTTGATCCTTTGGGGCTTGCAGATGACCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAGCTTAAGAATGGAAGACTTGCCATGTTCTCCATGTTTGGCTTCTTTGTGCAGGCCATTGTAACCGGAAAGGGCCCTATTGAGAACCTTGCTGACCATCTGGCTGACCCTGTTAACAACAATGCCTGGTGGTATGCCACCAACTTTGTACCTGGCAAGTGA

Protein Analysis

160

Amino Acids

17.1

Weight (kDa)

4.77

Isoelectric Point (pI)

14.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 1 - 127 2.4e-29 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 2 cut(s) 251, 471
AflII CTTAAG 2 cut(s) 311, 326
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 5 cut(s) 111, 174, 253, 446, 472
AluBI AGCT 8 cut(s) 34, 83, 89, 135, 194, 264, 310, 325
AluI AGCT 8 cut(s) 34, 83, 89, 135, 194, 264, 310, 325
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 1 cut(s) 263
AoxI GGCC 4 cut(s) 109, 221, 375, 394
ApaI GGGCCC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 221, 394, 395
AsuHPI GGTGA 3 cut(s) 74, 229, 328
BaeGI GKGCMC 1 cut(s) 398
BanII GRGCYC 3 cut(s) 13, 91, 398
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 426
BciT130I CCWGG 5 cut(s) 113, 176, 255, 448, 474
BfrI CTTAAG 2 cut(s) 311, 326
BglII AGATCT 1 cut(s) 93
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 5 cut(s) 113, 176, 255, 448, 474
BmgT120I GGNCC 3 cut(s) 221, 394, 395
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 5 cut(s) 113, 176, 255, 448, 474
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 2 cut(s) 105, 237
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 121, 174, 253
BsaWI WCCGGW 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 5 cut(s) 113, 176, 255, 448, 474
BseDI CCNNGG 3 cut(s) 121, 174, 253
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 21, 104
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 392
BshFI GGCC 4 cut(s) 111, 223, 377, 396
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 387
BsnI GGCC 4 cut(s) 111, 223, 377, 396
Bsp120I GGGCCC 1 cut(s) 394
Bsp1286I GDGCHC 3 cut(s) 13, 91, 398
Bsp143I GATC 2 cut(s) 93, 268
BspACI CCGC 1 cut(s) 208
BspANI GGCC 4 cut(s) 111, 223, 377, 396
BspCNI CTCAG 2 cut(s) 22, 103
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 1 cut(s) 263
BspTI CTTAAG 2 cut(s) 311, 326
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 121, 174, 253
BssMI GATC 2 cut(s) 93, 268
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 5 cut(s) 113, 176, 255, 448, 474
BstAFI CTTAAG 2 cut(s) 311, 326
BstC8I GCNNGC 2 cut(s) 282, 375
BstDEI CTNAG 4 cut(s) 30, 90, 136, 157
BstEII GGTNACC 1 cut(s) 203
BstKTI GATC 2 cut(s) 96, 271
BstMBI GATC 2 cut(s) 93, 268
BstMWI GCNNNNNNNGC 2 cut(s) 108, 167
BstNI CCWGG 5 cut(s) 113, 176, 255, 448, 474
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 5 cut(s) 111, 174, 253, 446, 472
BstSLI GKGCMC 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 4 cut(s) 111, 223, 377, 396
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 282, 375
Cfr13I GGNCC 3 cut(s) 221, 394, 395
Csp6I GTAC 2 cut(s) 250, 470
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 4 cut(s) 143, 187, 346, 355
CviQI GTAC 2 cut(s) 250, 470
DdeI CTNAG 4 cut(s) 30, 90, 136, 157
DpnI GATC 2 cut(s) 95, 270
DpnII GATC 2 cut(s) 93, 268
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 3 cut(s) 13, 91, 398
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 82
Eco91I GGTNACC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 394, 395
EcoO65I GGTNACC 1 cut(s) 203
EcoRII CCWGG 5 cut(s) 111, 174, 253, 446, 472
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 3 cut(s) 13, 91, 398
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 4 cut(s) 146, 190, 349, 358
FaiI YATR 6 cut(s) 144, 166, 188, 347, 356, 456
FatI CATG 4 cut(s) 142, 186, 345, 354
Fnu4HI GCNGC 1 cut(s) 262
FriOI GRGCYC 3 cut(s) 13, 91, 398
Fsp4HI GCNGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 262
GsuI CTGGAG 2 cut(s) 105, 237
HaeIII GGCC 4 cut(s) 111, 223, 377, 396
HapII CCGG 1 cut(s) 387
Hin1II CATG 4 cut(s) 146, 190, 349, 358
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 1 cut(s) 51
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 1 cut(s) 387
HphI GGTGA 3 cut(s) 74, 229, 328
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 436
HpyCH4V TGCA 4 cut(s) 146, 284, 305, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 167
HpyF3I CTNAG 4 cut(s) 30, 90, 136, 157
Hsp92II CATG 4 cut(s) 146, 190, 349, 358
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 2 cut(s) 93, 268
LmnI GCTCC 2 cut(s) 86, 191
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 203, 382
MalI GATC 2 cut(s) 95, 270
MboI GATC 2 cut(s) 93, 268
MboII GAAGA 3 cut(s) 88, 173, 348
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 13, 91, 398
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 5 cut(s) 97, 193, 212, 251, 289
MseI TTAA 3 cut(s) 312, 327, 435
MspCI CTTAAG 2 cut(s) 311, 326
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 5 cut(s) 113, 176, 255, 448, 474
MvaI CCWGG 5 cut(s) 113, 176, 255, 448, 474
MwoI GCNNNNNNNGC 2 cut(s) 108, 167
NdeII GATC 2 cut(s) 93, 268
NlaIII CATG 4 cut(s) 146, 190, 349, 358
NlaIV GGNNCC 1 cut(s) 396
PkrI GCNGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 5 cut(s) 111, 174, 253, 446, 472
PspEI GGTNACC 1 cut(s) 203
PspGI CCWGG 5 cut(s) 111, 174, 253, 446, 472
PspN4I GGNNCC 1 cut(s) 396
PspOMI GGGCCC 1 cut(s) 394
PspPI GGNCC 3 cut(s) 221, 394, 395
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 2 cut(s) 251, 471
RsaNI GTAC 2 cut(s) 250, 470
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 312, 327, 435
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 2 cut(s) 93, 268
Sau96I GGNCC 3 cut(s) 221, 394, 395
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 5 cut(s) 113, 176, 255, 448, 474
SduI GDGCHC 3 cut(s) 13, 91, 398
SfaNI GCATC 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 311, 326
SmoI CTYRAG 2 cut(s) 311, 326
SsiI CCGC 1 cut(s) 208
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 5 cut(s) 111, 174, 253, 446, 472
StyI CCWWGG 1 cut(s) 121
Tru1I TTAA 3 cut(s) 312, 327, 435
Tru9I TTAA 3 cut(s) 312, 327, 435
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 75
Vha464I CTTAAG 2 cut(s) 311, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.