The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Chloroa_b-bind | PF00504 | 66 - 232 | 5.4e-51 | Chlorophyll A-B binding protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 45, 84, 100, 160, 652 |
| AclWI | GGATC | 4 cut(s) | 292, 578, 599, 737 |
| AcoI | YGGCCR | 2 cut(s) | 37, 97 |
| AcsI | RAATTY | 1 cut(s) | 215 |
| AcuI | CTGAAG | 2 cut(s) | 630, 647 |
| AdeI | CACNNNGTG | 1 cut(s) | 545 |
| AgsI | TTSAA | 3 cut(s) | 52, 394, 515 |
| AjnI | CCWGG | 3 cut(s) | 220, 489, 568 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 669, 701 |
| AluBI | AGCT | 3 cut(s) | 9, 67, 349 |
| AluI | AGCT | 3 cut(s) | 9, 67, 349 |
| Alw21I | GWGCWC | 4 cut(s) | 69, 328, 351, 501 |
| Alw26I | GTCTC | 2 cut(s) | 260, 408 |
| Alw44I | GTGCAC | 1 cut(s) | 324 |
| AlwI | GGATC | 4 cut(s) | 292, 578, 599, 737 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 263 |
| Ama87I | CYCGRG | 1 cut(s) | 134 |
| AoxI | GGCC | 5 cut(s) | 37, 85, 97, 312, 424 |
| ApaLI | GTGCAC | 1 cut(s) | 324 |
| ApoI | RAATTY | 1 cut(s) | 215 |
| AspLEI | GCGC | 1 cut(s) | 117 |
| AspS9I | GGNCC | 4 cut(s) | 176, 312, 536, 710 |
| AsuC2I | CCSGG | 1 cut(s) | 789 |
| AsuHPI | GGTGA | 6 cut(s) | 97, 224, 236, 307, 557, 643 |
| AvaI | CYCGRG | 1 cut(s) | 134 |
| AvaII | GGWCC | 3 cut(s) | 176, 536, 710 |
| BaeGI | GKGCMC | 2 cut(s) | 133, 328 |
| BanII | GRGCYC | 2 cut(s) | 69, 351 |
| BbsI | GAAGAC | 1 cut(s) | 331 |
| Bbv12I | GWGCWC | 4 cut(s) | 69, 328, 351, 501 |
| BccI | CCATC | 3 cut(s) | 205, 228, 303 |
| BciT130I | CCWGG | 3 cut(s) | 222, 491, 570 |
| BciVI | GTATCC | 1 cut(s) | 512 |
| BcnI | CCSGG | 1 cut(s) | 789 |
| BcoDI | GTCTC | 2 cut(s) | 260, 408 |
| BfaI | CTAG | 2 cut(s) | 329, 473 |
| BfuI | GTATCC | 1 cut(s) | 512 |
| BisI | GCNGC | 3 cut(s) | 85, 100, 653 |
| BlsI | GCNGC | 3 cut(s) | 86, 101, 654 |
| Bme1390I | CCNGG | 4 cut(s) | 222, 491, 570, 789 |
| Bme18I | GGWCC | 3 cut(s) | 176, 536, 710 |
| BmeT110I | CYCGRG | 1 cut(s) | 134 |
| BmgT120I | GGNCC | 4 cut(s) | 176, 312, 536, 710 |
| BmiI | GGNNCC | 3 cut(s) | 177, 577, 711 |
| BmrFI | CCNGG | 4 cut(s) | 222, 491, 570, 789 |
| BmsI | GCATC | 2 cut(s) | 111, 477 |
| BpiI | GAAGAC | 1 cut(s) | 331 |
| BpmI | CTGGAG | 1 cut(s) | 591 |
| BpuMI | CCSGG | 1 cut(s) | 789 |
| BsaI | GGTCTC | 2 cut(s) | 260, 408 |
| BsaJI | CCNNGG | 4 cut(s) | 88, 220, 568, 787 |
| Bse118I | RCCGGY | 1 cut(s) | 35 |
| Bse1I | ACTGG | 3 cut(s) | 214, 706, 746 |
| Bse3DI | GCAATG | 1 cut(s) | 666 |
| BseBI | CCWGG | 3 cut(s) | 222, 491, 570 |
| BseDI | CCNNGG | 4 cut(s) | 88, 220, 568, 787 |
| BseGI | GGATG | 3 cut(s) | 239, 338, 468 |
| BseMI | GCAATG | 1 cut(s) | 666 |
| BseMII | CTCAG | 1 cut(s) | 255 |
| BseNI | ACTGG | 3 cut(s) | 214, 706, 746 |
| BseRI | GAGGAG | 1 cut(s) | 588 |
| BseSI | GKGCMC | 2 cut(s) | 133, 328 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| BshFI | GGCC | 5 cut(s) | 39, 87, 99, 314, 426 |
| BsiHKAI | GWGCWC | 4 cut(s) | 69, 328, 351, 501 |
| BsiHKCI | CYCGRG | 1 cut(s) | 134 |
| BsiSI | CCGG | 2 cut(s) | 36, 789 |
| BslFI | GGGAC | 4 cut(s) | 189, 251, 723, 770 |
| BsmAI | GTCTC | 2 cut(s) | 260, 408 |
| BsmFI | GGGAC | 4 cut(s) | 189, 251, 723, 770 |
| BsnI | GGCC | 5 cut(s) | 39, 87, 99, 314, 426 |
| Bso31I | GGTCTC | 2 cut(s) | 260, 408 |
| BsoBI | CYCGRG | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 5 cut(s) | 69, 133, 328, 351, 501 |
| Bsp143I | GATC | 4 cut(s) | 297, 583, 604, 742 |
| BspACI | CCGC | 5 cut(s) | 45, 84, 100, 160, 652 |
| BspANI | GGCC | 5 cut(s) | 39, 87, 99, 314, 426 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 3 cut(s) | 177, 577, 711 |
| BspPI | GGATC | 4 cut(s) | 292, 578, 599, 737 |
| BspTNI | GGTCTC | 2 cut(s) | 260, 408 |
| BsrDI | GCAATG | 1 cut(s) | 666 |
| BsrFI | RCCGGY | 1 cut(s) | 35 |
| BsrI | ACTGG | 3 cut(s) | 214, 706, 746 |
| BssAI | RCCGGY | 1 cut(s) | 35 |
| BssECI | CCNNGG | 4 cut(s) | 88, 220, 568, 787 |
| BssMI | GATC | 4 cut(s) | 297, 583, 604, 742 |
| BssT1I | CCWWGG | 1 cut(s) | 88 |
| Bst2UI | CCWGG | 3 cut(s) | 222, 491, 570 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 284 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 3 cut(s) | 7, 37, 657 |
| BstDEI | CTNAG | 1 cut(s) | 264 |
| BstF5I | GGATG | 3 cut(s) | 239, 338, 468 |
| BstHHI | GCGC | 1 cut(s) | 117 |
| BstKTI | GATC | 4 cut(s) | 300, 586, 607, 745 |
| BstMAI | GTCTC | 2 cut(s) | 260, 408 |
| BstMBI | GATC | 4 cut(s) | 297, 583, 604, 742 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 482, 758 |
| BstNI | CCWGG | 3 cut(s) | 222, 491, 570 |
| BstSCI | CCNGG | 4 cut(s) | 220, 489, 568, 787 |
| BstSLI | GKGCMC | 2 cut(s) | 133, 328 |
| BstV2I | GAAGAC | 1 cut(s) | 331 |
| BsuI | GTATCC | 1 cut(s) | 512 |
| BsuRI | GGCC | 5 cut(s) | 39, 87, 99, 314, 426 |
| BtsCI | GGATG | 3 cut(s) | 239, 338, 468 |
| BtsI | GCAGTG | 1 cut(s) | 240 |
| BtsIMutI | CAGTG | 2 cut(s) | 240, 753 |
| Cac8I | GCNNGC | 3 cut(s) | 7, 37, 657 |
| CaiI | CAGNNNCTG | 1 cut(s) | 263 |
| CfoI | GCGC | 1 cut(s) | 117 |
| Cfr10I | RCCGGY | 1 cut(s) | 35 |
| Cfr13I | GGNCC | 4 cut(s) | 176, 312, 536, 710 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 576, 611 |
| CviAII | CATG | 7 cut(s) | 109, 290, 316, 458, 502, 734, 762 |
| DdeI | CTNAG | 1 cut(s) | 264 |
| DpnI | GATC | 4 cut(s) | 299, 585, 606, 744 |
| DpnII | GATC | 4 cut(s) | 297, 583, 604, 742 |
| DraIII | CACNNNGTG | 1 cut(s) | 545 |
| EaeI | YGGCCR | 2 cut(s) | 37, 97 |
| Ecl136II | GAGCTC | 2 cut(s) | 67, 349 |
| Eco130I | CCWWGG | 1 cut(s) | 88 |
| Eco24I | GRGCYC | 2 cut(s) | 69, 351 |
| Eco31I | GGTCTC | 2 cut(s) | 260, 408 |
| Eco47I | GGWCC | 3 cut(s) | 176, 536, 710 |
| Eco53kI | GAGCTC | 2 cut(s) | 67, 349 |
| Eco57I | CTGAAG | 2 cut(s) | 630, 647 |
| Eco88I | CYCGRG | 1 cut(s) | 134 |
| EcoICRI | GAGCTC | 2 cut(s) | 67, 349 |
| EcoO109I | RGGNCCY | 1 cut(s) | 710 |
| EcoRI | GAATTC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 3 cut(s) | 220, 489, 568 |
| EcoT14I | CCWWGG | 1 cut(s) | 88 |
| EcoT22I | ATGCAT | 1 cut(s) | 763 |
| EcoT38I | GRGCYC | 2 cut(s) | 69, 351 |
| ErhI | CCWWGG | 1 cut(s) | 88 |
| FaeI | CATG | 7 cut(s) | 112, 293, 319, 461, 505, 737, 765 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 411, 443 |
| FaqI | GGGAC | 4 cut(s) | 189, 251, 723, 770 |
| FatI | CATG | 7 cut(s) | 108, 289, 315, 457, 501, 733, 761 |
| Fnu4HI | GCNGC | 3 cut(s) | 85, 100, 653 |
| FokI | GGATG | 3 cut(s) | 246, 345, 455 |
| FriOI | GRGCYC | 2 cut(s) | 69, 351 |
| Fsp4HI | GCNGC | 3 cut(s) | 85, 100, 653 |
| FspBI | CTAG | 2 cut(s) | 329, 473 |
| GlaI | GCGC | 1 cut(s) | 116 |
| GluI | GCNGC | 3 cut(s) | 85, 100, 653 |
| GsuI | CTGGAG | 1 cut(s) | 591 |
| HaeIII | GGCC | 5 cut(s) | 39, 87, 99, 314, 426 |
| HapII | CCGG | 2 cut(s) | 36, 789 |
| HhaI | GCGC | 1 cut(s) | 117 |
| Hin1II | CATG | 7 cut(s) | 112, 293, 319, 461, 505, 737, 765 |
| Hin6I | GCGC | 1 cut(s) | 115 |
| HinP1I | GCGC | 1 cut(s) | 115 |
| HinfI | GANTC | 2 cut(s) | 557, 678 |
| HpaII | CCGG | 2 cut(s) | 36, 789 |
| HphI | GGTGA | 6 cut(s) | 97, 224, 236, 307, 557, 643 |
| Hpy166II | GTNNAC | 1 cut(s) | 326 |
| Hpy188I | TCNGA | 3 cut(s) | 75, 187, 418 |
| Hpy188III | TCNNGA | 3 cut(s) | 554, 608, 643 |
| Hpy8I | GTNNAC | 1 cut(s) | 326 |
| HpyAV | CCTTC | 5 cut(s) | 413, 509, 542, 622, 628 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 284 |
| HpyCH4V | TGCA | 5 cut(s) | 14, 155, 326, 461, 761 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 482, 758 |
| HpyF3I | CTNAG | 1 cut(s) | 264 |
| Hsp92II | CATG | 7 cut(s) | 112, 293, 319, 461, 505, 737, 765 |
| HspAI | GCGC | 1 cut(s) | 115 |
| KroI | GCCGGC | 1 cut(s) | 35 |
| KroNI | GCCGGC | 1 cut(s) | 37 |
| Kzo9I | GATC | 4 cut(s) | 297, 583, 604, 742 |
| LmnI | GCTCC | 1 cut(s) | 575 |
| LweI | GCATC | 2 cut(s) | 111, 477 |
| MaeI | CTAG | 2 cut(s) | 329, 473 |
| MaeIII | GTNAC | 2 cut(s) | 224, 697 |
| MalI | GATC | 4 cut(s) | 299, 585, 606, 744 |
| MboI | GATC | 4 cut(s) | 297, 583, 604, 742 |
| MboII | GAAGA | 2 cut(s) | 88, 331 |
| MhlI | GDGCHC | 5 cut(s) | 69, 133, 328, 351, 501 |
| MluCI | AATT | 1 cut(s) | 215 |
| MnlI | CCTC | 7 cut(s) | 105, 286, 373, 461, 527, 566, 676 |
| Mph1103I | ATGCAT | 1 cut(s) | 763 |
| MroNI | GCCGGC | 1 cut(s) | 35 |
| MslI | CAYNNNNRTG | 2 cut(s) | 107, 331 |
| MspI | CCGG | 2 cut(s) | 36, 789 |
| MspR9I | CCNGG | 4 cut(s) | 222, 491, 570, 789 |
| MvaI | CCWGG | 3 cut(s) | 222, 491, 570 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 482, 758 |
| NaeI | GCCGGC | 1 cut(s) | 37 |
| NciI | CCSGG | 1 cut(s) | 789 |
| NdeII | GATC | 4 cut(s) | 297, 583, 604, 742 |
| NgoMIV | GCCGGC | 1 cut(s) | 35 |
| NlaIII | CATG | 7 cut(s) | 112, 293, 319, 461, 505, 737, 765 |
| NlaIV | GGNNCC | 3 cut(s) | 177, 577, 711 |
| NmuCI | GTSAC | 1 cut(s) | 224 |
| NsiI | ATGCAT | 1 cut(s) | 763 |
| PdiI | GCCGGC | 1 cut(s) | 37 |
| PfeI | GAWTC | 2 cut(s) | 557, 678 |
| PkrI | GCNGC | 3 cut(s) | 86, 101, 654 |
| PpuMI | RGGWCCY | 1 cut(s) | 710 |
| Psp124BI | GAGCTC | 2 cut(s) | 69, 351 |
| Psp5II | RGGWCCY | 1 cut(s) | 710 |
| Psp6I | CCWGG | 3 cut(s) | 220, 489, 568 |
| PspGI | CCWGG | 3 cut(s) | 220, 489, 568 |
| PspN4I | GGNNCC | 3 cut(s) | 177, 577, 711 |
| PspPI | GGNCC | 4 cut(s) | 176, 312, 536, 710 |
| PspPPI | RGGWCCY | 1 cut(s) | 710 |
| PstNI | CAGNNNCTG | 1 cut(s) | 263 |
| RseI | CAYNNNNRTG | 2 cut(s) | 107, 331 |
| SacI | GAGCTC | 2 cut(s) | 69, 351 |
| SatI | GCNGC | 3 cut(s) | 85, 100, 653 |
| Sau3AI | GATC | 4 cut(s) | 297, 583, 604, 742 |
| Sau96I | GGNCC | 4 cut(s) | 176, 312, 536, 710 |
| ScrFI | CCNGG | 4 cut(s) | 222, 491, 570, 789 |
| SduI | GDGCHC | 5 cut(s) | 69, 133, 328, 351, 501 |
| SfaNI | GCATC | 2 cut(s) | 111, 477 |
| SinI | GGWCC | 3 cut(s) | 176, 536, 710 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 107, 331 |
| Sse9I | AATT | 1 cut(s) | 215 |
| SsiI | CCGC | 5 cut(s) | 45, 84, 100, 160, 652 |
| SspMI | CTAG | 2 cut(s) | 329, 473 |
| SstI | GAGCTC | 2 cut(s) | 69, 351 |
| StyD4I | CCNGG | 4 cut(s) | 220, 489, 568, 787 |
| StyI | CCWWGG | 1 cut(s) | 88 |
| TaaI | ACNGT | 2 cut(s) | 121, 284 |
| TasI | AATT | 1 cut(s) | 215 |
| TauI | GCSGC | 3 cut(s) | 87, 102, 655 |
| TfiI | GAWTC | 2 cut(s) | 557, 678 |
| TscAI | CASTG | 2 cut(s) | 247, 753 |
| TseFI | GTSAC | 1 cut(s) | 224 |
| Tsp45I | GTSAC | 1 cut(s) | 224 |
| TspGWI | ACGGA | 1 cut(s) | 246 |
| TspRI | CASTG | 2 cut(s) | 247, 753 |
| VneI | GTGCAC | 1 cut(s) | 324 |
| VpaK11BI | GGWCC | 3 cut(s) | 176, 536, 710 |
| XapI | RAATTY | 1 cut(s) | 215 |
| XspI | CTAG | 2 cut(s) | 329, 473 |
| Zsp2I | ATGCAT | 1 cut(s) | 763 |