Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

73860922 .. 73863117

Gene Structure 2196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGCAATGCTTGGGGCCTTGGGCTGTGTTTTCCACGAACTCCTAGCCCGCAACGGAGTCAAGTTTGGTTCAAGGTTGGAGCCCAGATATTCAGTGAGGGTGGGCTAGATTACTTGGGAAACCCAAGCTTAGTCGCATTTTGGCAATTTGGGCCACCCAGGGACTTGGGGCTTGCGGAAGATCCAGAAGCTTTTGCTTTTGCTGAGCTAAAGGTACAGGAGCTCAAGAATGGAAGATTAGCTATGTTTTCCATGTTAGGGTTTTTCGTACAAGCCATTGTTACCGGAAAAGGACCAATTGAGAACCTGGCTGACCACTTAGCTGACCCTGTTAACAACAATGCTTGGTCATATGCCACCAACTTTGTTCCCAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

126

Amino Acids

13.86

Weight (kDa)

5.73

Isoelectric Point (pI)

22.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	56 - 93	2.1e-09	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 176
AclWI	GGATC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	216, 270
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	158, 306
AluBI	AGCT	6 cut(s)	129, 191, 208, 223, 242, 323
AluI	AGCT	6 cut(s)	129, 191, 208, 223, 242, 323
Alw21I	GWGCWC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	16, 152
AspS9I	GGNCC	3 cut(s)	16, 152, 293
AvaII	GGWCC	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	85, 225
Bbv12I	GWGCWC	1 cut(s)	225
BciT130I	CCWGG	2 cut(s)	160, 308
BfaI	CTAG	2 cut(s)	45, 107
BlpI	GCTNAGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	160, 308
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	16, 152, 293
BmiI	GGNNCC	2 cut(s)	17, 82
BmrFI	CCNGG	2 cut(s)	160, 308
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	19, 158, 159
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	160, 308
BseDI	CCNNGG	3 cut(s)	19, 158, 159
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	18, 154
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	18, 154
Bsp1286I	GDGCHC	2 cut(s)	85, 225
Bsp143I	GATC	1 cut(s)	181
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	50, 176
BspANI	GGCC	2 cut(s)	18, 154
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	17, 82
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	19, 158, 159
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	160, 308
BstC8I	GCNNGC	2 cut(s)	50, 174
BstDEI	CTNAG	3 cut(s)	130, 204, 319
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	2 cut(s)	160, 308
BstSCI	CCNGG	2 cut(s)	158, 306
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	18, 154
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	50, 174
Cfr13I	GGNCC	3 cut(s)	16, 152, 293
Csp6I	GTAC	2 cut(s)	215, 269
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	2 cut(s)	215, 269
DdeI	CTNAG	3 cut(s)	130, 204, 319
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	85, 225
Eco47I	GGWCC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	158, 306
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	2 cut(s)	85, 225
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	1 cut(s)	256
FaiI	YATR	4 cut(s)	245, 254, 352, 354
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	352
FriOI	GRGCYC	2 cut(s)	85, 225
FspBI	CTAG	2 cut(s)	45, 107
HaeIII	GGCC	2 cut(s)	18, 154
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	2 cut(s)	127, 189
HinfI	GANTC	1 cut(s)	58
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	185, 226
Hpy8I	GTNNAC	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	130, 204, 319
Hsp92II	CATG	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	80, 220
LpnPI	CCDG	9 cut(s)	98, 145, 172, 198, 203, 293, 298, 320, 342
MaeI	CTAG	2 cut(s)	45, 107
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	191, 246
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	85, 225
MluCI	AATT	2 cut(s)	146, 297
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	1 cut(s)	91
MseI	TTAA	1 cut(s)	333
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	160, 308
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	160, 308
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	17, 82
PasI	CCCWGGG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	158, 306
PspGI	CCWGG	2 cut(s)	158, 306
PspN4I	GGNNCC	2 cut(s)	17, 82
PspPI	GGNCC	3 cut(s)	16, 152, 293
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	2 cut(s)	216, 270
RsaNI	GTAC	2 cut(s)	215, 269
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	3 cut(s)	16, 152, 293
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	160, 308
SduI	GDGCHC	2 cut(s)	85, 225
SetI	ASST	9 cut(s)	78, 131, 193, 210, 216, 225, 244, 309, 325
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	146, 297
SsiI	CCGC	2 cut(s)	50, 176
SspMI	CTAG	2 cut(s)	45, 107
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	158, 306
StyI	CCWWGG	1 cut(s)	19
TasI	AATT	2 cut(s)	146, 297
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	293
XspI	CTAG	2 cut(s)	45, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.