The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Chloroa_b-bind | PF00504 | 1 - 65 | 5.4e-18 | Chlorophyll A-B binding protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 225 |
| AcsI | RAATTY | 1 cut(s) | 220 |
| AfaI | GTAC | 1 cut(s) | 186 |
| AflII | CTTAAG | 1 cut(s) | 125 |
| AgsI | TTSAA | 1 cut(s) | 168 |
| AluBI | AGCT | 2 cut(s) | 124, 139 |
| AluI | AGCT | 2 cut(s) | 124, 139 |
| Alw21I | GWGCWC | 2 cut(s) | 37, 141 |
| Alw44I | GTGCAC | 1 cut(s) | 33 |
| AoxI | GGCC | 2 cut(s) | 91, 225 |
| ApaLI | GTGCAC | 1 cut(s) | 33 |
| ApoI | RAATTY | 1 cut(s) | 220 |
| AspS9I | GGNCC | 1 cut(s) | 209 |
| AsuC2I | CCSGG | 2 cut(s) | 69, 288 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 61, 142 |
| AvaII | GGWCC | 1 cut(s) | 209 |
| BaeGI | GKGCMC | 1 cut(s) | 37 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| Bbv12I | GWGCWC | 2 cut(s) | 37, 141 |
| BcnI | CCSGG | 2 cut(s) | 69, 288 |
| BfmI | CTRYAG | 1 cut(s) | 19 |
| BfrI | CTTAAG | 1 cut(s) | 125 |
| Bme1390I | CCNGG | 2 cut(s) | 69, 288 |
| Bme18I | GGWCC | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 209 |
| BmiI | GGNNCC | 1 cut(s) | 210 |
| BmrFI | CCNGG | 2 cut(s) | 69, 288 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BpuEI | CTTGAG | 1 cut(s) | 125 |
| BpuMI | CCSGG | 2 cut(s) | 69, 288 |
| BsaWI | WCCGGW | 1 cut(s) | 200 |
| Bse118I | RCCGGY | 1 cut(s) | 29 |
| BseSI | GKGCMC | 1 cut(s) | 37 |
| BsgI | GTGCAG | 1 cut(s) | 27 |
| BshFI | GGCC | 2 cut(s) | 93, 227 |
| BsiHKAI | GWGCWC | 2 cut(s) | 37, 141 |
| BsiSI | CCGG | 4 cut(s) | 30, 68, 201, 288 |
| BslFI | GGGAC | 1 cut(s) | 222 |
| BsmFI | GGGAC | 1 cut(s) | 222 |
| BsnI | GGCC | 2 cut(s) | 93, 227 |
| Bsp1286I | GDGCHC | 2 cut(s) | 37, 141 |
| Bsp1407I | TGTACA | 1 cut(s) | 184 |
| BspANI | GGCC | 2 cut(s) | 93, 227 |
| BspLI | GGNNCC | 1 cut(s) | 210 |
| BspTI | CTTAAG | 1 cut(s) | 125 |
| BsrFI | RCCGGY | 1 cut(s) | 29 |
| BsrGI | TGTACA | 1 cut(s) | 184 |
| BssAI | RCCGGY | 1 cut(s) | 29 |
| BstAFI | CTTAAG | 1 cut(s) | 125 |
| BstAUI | TGTACA | 1 cut(s) | 184 |
| BstDEI | CTNAG | 1 cut(s) | 235 |
| BstSCI | CCNGG | 2 cut(s) | 67, 286 |
| BstSFI | CTRYAG | 1 cut(s) | 19 |
| BstSLI | GKGCMC | 1 cut(s) | 37 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BsuRI | GGCC | 2 cut(s) | 93, 227 |
| BtsI | GCAGTG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 1 cut(s) | 15 |
| Cfr10I | RCCGGY | 1 cut(s) | 29 |
| Cfr13I | GGNCC | 1 cut(s) | 209 |
| Csp6I | GTAC | 1 cut(s) | 185 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 262, 297 |
| CviAII | CATG | 1 cut(s) | 160 |
| CviQI | GTAC | 1 cut(s) | 185 |
| DdeI | CTNAG | 1 cut(s) | 235 |
| EaeI | YGGCCR | 1 cut(s) | 225 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco147I | AGGCCT | 1 cut(s) | 93 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 1 cut(s) | 209 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| FaeI | CATG | 1 cut(s) | 163 |
| FaiI | YATR | 2 cut(s) | 161, 270 |
| FaqI | GGGAC | 1 cut(s) | 222 |
| FatI | CATG | 1 cut(s) | 159 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| HaeIII | GGCC | 2 cut(s) | 93, 227 |
| HapII | CCGG | 4 cut(s) | 30, 68, 201, 288 |
| Hin1II | CATG | 1 cut(s) | 163 |
| HincII | GTYRAC | 1 cut(s) | 250 |
| HindII | GTYRAC | 1 cut(s) | 250 |
| HpaI | GTTAAC | 1 cut(s) | 250 |
| HpaII | CCGG | 4 cut(s) | 30, 68, 201, 288 |
| HphI | GGTGA | 3 cut(s) | 56, 61, 142 |
| Hpy166II | GTNNAC | 2 cut(s) | 35, 250 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 2 cut(s) | 35, 250 |
| HpyAV | CCTTC | 2 cut(s) | 8, 127 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 35, 98 |
| HpyF3I | CTNAG | 1 cut(s) | 235 |
| Hsp92II | CATG | 1 cut(s) | 163 |
| KspAI | GTTAAC | 1 cut(s) | 250 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| LpnPI | CCDG | 5 cut(s) | 43, 81, 120, 214, 258 |
| MaeIII | GTNAC | 1 cut(s) | 196 |
| MboII | GAAGA | 1 cut(s) | 113 |
| MhlI | GDGCHC | 2 cut(s) | 37, 141 |
| MluCI | AATT | 2 cut(s) | 24, 220 |
| MnlI | CCTC | 3 cut(s) | 40, 48, 103 |
| MseI | TTAA | 2 cut(s) | 126, 249 |
| MspCI | CTTAAG | 1 cut(s) | 125 |
| MspI | CCGG | 4 cut(s) | 30, 68, 201, 288 |
| MspR9I | CCNGG | 2 cut(s) | 69, 288 |
| NciI | CCSGG | 2 cut(s) | 69, 288 |
| NlaIII | CATG | 1 cut(s) | 163 |
| NlaIV | GGNNCC | 1 cut(s) | 210 |
| NmeAIII | GCCGAG | 1 cut(s) | 145 |
| PceI | AGGCCT | 1 cut(s) | 93 |
| PfoI | TCCNGGA | 1 cut(s) | 286 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| PspN4I | GGNNCC | 1 cut(s) | 210 |
| PspPI | GGNCC | 1 cut(s) | 209 |
| RsaI | GTAC | 1 cut(s) | 186 |
| RsaNI | GTAC | 1 cut(s) | 185 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 2 cut(s) | 126, 249 |
| Sau96I | GGNCC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 2 cut(s) | 69, 288 |
| SduI | GDGCHC | 2 cut(s) | 37, 141 |
| SetI | ASST | 5 cut(s) | 40, 51, 126, 132, 141 |
| SfcI | CTRYAG | 1 cut(s) | 19 |
| SinI | GGWCC | 1 cut(s) | 209 |
| SmlI | CTYRAG | 2 cut(s) | 125, 140 |
| SmoI | CTYRAG | 2 cut(s) | 125, 140 |
| Sse9I | AATT | 2 cut(s) | 24, 220 |
| SseBI | AGGCCT | 1 cut(s) | 93 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| StuI | AGGCCT | 1 cut(s) | 93 |
| StyD4I | CCNGG | 2 cut(s) | 67, 286 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TaqII | GACCGA | 1 cut(s) | 226 |
| TasI | AATT | 2 cut(s) | 24, 220 |
| TatI | WGTACW | 1 cut(s) | 184 |
| Tru1I | TTAA | 2 cut(s) | 126, 249 |
| Tru9I | TTAA | 2 cut(s) | 126, 249 |
| TscAI | CASTG | 1 cut(s) | 15 |
| TspRI | CASTG | 1 cut(s) | 15 |
| Vha464I | CTTAAG | 1 cut(s) | 125 |
| VneI | GTGCAC | 1 cut(s) | 33 |
| VpaK11BI | GGWCC | 1 cut(s) | 209 |
| XapI | RAATTY | 1 cut(s) | 220 |