Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

58201440 .. 58201742

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGTGGGCAACGATCGTACGAGGTGGGCAGCAGGCCATGCGAGGCTAGGCTAGGATCAAAGTACTTGGGTCCATTTTCTGACAAGGCCCCCTCTTACCTTAATGGAGAATTCCCCGGTGACTATGGTTGGGATACCGCCAGACTTTCAGCTGATCTAGAGACTTTCGCAAAGAACCGTGAGCTTGAAGTCATCCATTCAAGATGGGCCATGCTCCATGTCTTAGGCTGTGTTTTCCCCGAACTCTTGGCTAGTAATGGAGTCAAGTTCGGTGAAGCTAATTGGTTCAAGGCTAGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

100

Amino Acids

11.13

Weight (kDa)

6.72

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	30 - 97	4.1e-20	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	2 cut(s)	20, 65
AgsI	TTSAA	3 cut(s)	188, 201, 289
AluBI	AGCT	3 cut(s)	152, 184, 278
AluI	AGCT	3 cut(s)	152, 184, 278
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	3 cut(s)	35, 87, 207
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	71, 88, 207
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	131, 284
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	5 cut(s)	48, 53, 158, 252, 294
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	71, 88, 207
BmiI	GGNNCC	2 cut(s)	72, 90
BmrFI	CCNGG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	37, 89, 209
BsiEI	CGRYCG	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	117
BsiWI	CGTACG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	37, 89, 209
Bsp143I	GATC	3 cut(s)	14, 56, 154
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	3 cut(s)	37, 89, 209
BspLI	GGNNCC	2 cut(s)	72, 90
BspPI	GGATC	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	14, 56, 154
Bst4CI	ACNGT	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	3 cut(s)	17, 59, 157
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	14, 56, 154
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	37, 89, 209
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	71, 88, 207
Csp6I	GTAC	2 cut(s)	19, 64
CviAII	CATG	3 cut(s)	39, 211, 218
CviQI	GTAC	2 cut(s)	19, 64
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	3 cut(s)	16, 58, 156
DpnII	GATC	3 cut(s)	14, 56, 154
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	42, 214, 221
FaiI	YATR	4 cut(s)	40, 126, 212, 219
FatI	CATG	3 cut(s)	38, 210, 217
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	5 cut(s)	48, 53, 158, 252, 294
GluI	GCNGC	1 cut(s)	31
HaeIII	GGCC	3 cut(s)	37, 89, 209
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	3 cut(s)	42, 214, 221
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	131, 284
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	158, 201
HpyCH4III	ACNGT	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	42, 214, 221
Kzo9I	GATC	3 cut(s)	14, 56, 154
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	3 cut(s)	19, 130, 154
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	5 cut(s)	48, 53, 158, 252, 294
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	16, 58, 156
MboI	GATC	3 cut(s)	14, 56, 154
MluCI	AATT	2 cut(s)	110, 280
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	3 cut(s)	16, 37, 103
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	14, 56, 154
NlaIII	CATG	3 cut(s)	42, 214, 221
NlaIV	GGNNCC	2 cut(s)	72, 90
NmuCI	GTSAC	1 cut(s)	119
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	32
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PspLI	CGTACG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	72, 90
PspPI	GGNCC	3 cut(s)	71, 88, 207
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	20, 65
RsaNI	GTAC	2 cut(s)	19, 64
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	3 cut(s)	14, 56, 154
Sau96I	GGNCC	3 cut(s)	71, 88, 207
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	5 cut(s)	27, 102, 154, 186, 280
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	2 cut(s)	110, 280
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	5 cut(s)	48, 53, 158, 252, 294
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	2 cut(s)	110, 280
TatI	WGTACW	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	157
XspI	CTAG	5 cut(s)	48, 53, 158, 252, 294
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.