RLG00000020573

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
66387802 .. 66388605
804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020573

Sequence Viewer

Length: 804 bp
ATGGCTGCTTCAACAATGGCTCTGTCCTCTCCTTCTCTGGCTGGCCAAGCTGTGCAGCTCAGTCCAGCTGCATCTAACCTCCTCGGTGAGGGCAGAATCACCATGCGCAAAACCGCAGCCAAGTCCAAGAATGTGTCGTCTGGCAGCCCTTGGTACGGCCCAGACCGTGTCAAGTACTTGGGGCCATTCTCCGGTGAGGCTCCATCTTACCTCACTGGAGAGTTTCCAGGTGACTACGGCTGGGACACAGCTGGGCTCTCAGCTGATCCCGAGACCTTTGCCAAGAACCGTGAGCTCGAGGTCATCCATTCAAGATGGGCCATGCTCGGGGCTCTAGGATGTGTCTTCCCTGAACTCCTAGCTCGTAATGGAGTCAAGTTCGGAGAAGCTGTTTGGTTCAAGGCTGGAGCCCAGATATTCAGTGAGGGGGGACTAGACTACTTGGGAAACCCAAGCTTAGTCCACGCTCAAAGCATTTTGGCAATCTGGGCAACACAAGTGATCTTGATGGGTGCAGTTGAAGGCTACAGAATTGCGGGAGGGCCTCTCGGTGAGGTAGTAGACCCATTGTACCCCGGTGGGAGCTTTGACCCATTAGGGCTTGCAGACGATCCAGAGGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAGAACGGAAGACTGGCCATGTTTTCCATGTTCGGATTCTTCGTACAAGCCATTGTTACCGGAAAGGGACCGATTGAGAACCTAGCTGACCACTTGGCTGACCCTGTTAACAACAACGCTTGGTCATATGCCACAAACTTTGTTCCCGGAAAGTGA

Protein Analysis

268

Amino Acids

28.28

Weight (kDa)

5.14

Isoelectric Point (pI)

23.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 67 - 234 1.5e-50 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccI GTMKAC 1 cut(s) 561
AciI CCGC 2 cut(s) 114, 536
AclWI GGATC 2 cut(s) 260, 605
AcoI YGGCCR 2 cut(s) 43, 663
AfaI GTAC 4 cut(s) 155, 176, 572, 693
AfiI CCNNNNNNNGG 4 cut(s) 88, 155, 191, 327
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 4 cut(s) 12, 312, 400, 521
AjnI CCWGG 1 cut(s) 226
Alw21I GWGCWC 2 cut(s) 297, 648
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 2 cut(s) 260, 605
Ama87I CYCGRG 3 cut(s) 269, 296, 326
AoxI GGCC 6 cut(s) 43, 157, 182, 318, 542, 663
ApeKI GCWGC 5 cut(s) 5, 55, 68, 116, 144
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 5 cut(s) 158, 182, 318, 542, 716
AsuC2I CCSGG 2 cut(s) 576, 795
AsuHPI GGTGA 6 cut(s) 91, 98, 206, 242, 563, 649
AvaI CYCGRG 3 cut(s) 269, 296, 326
AvaII GGWCC 1 cut(s) 716
BalI TGGCCA 2 cut(s) 45, 665
BanII GRGCYC 5 cut(s) 258, 297, 334, 412, 648
BbsI GAAGAC 2 cut(s) 337, 664
Bbv12I GWGCWC 2 cut(s) 297, 648
BbvI GCAGC 4 cut(s) 55, 67, 128, 156
BccI CCATC 3 cut(s) 211, 309, 502
BceAI ACGGC 2 cut(s) 172, 253
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 2 cut(s) 576, 795
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 4 cut(s) 335, 359, 434, 731
BfmI CTRYAG 1 cut(s) 526
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 5 cut(s) 6, 56, 69, 117, 145
BlpI GCTNAGC 1 cut(s) 627
BlsI GCNGC 5 cut(s) 7, 57, 70, 118, 146
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 228, 576, 795
Bme18I GGWCC 1 cut(s) 716
BmeT110I CYCGRG 3 cut(s) 269, 296, 326
BmgT120I GGNCC 5 cut(s) 158, 182, 318, 542, 716
BmiI GGNNCC 4 cut(s) 183, 201, 409, 717
BmrFI CCNGG 3 cut(s) 228, 576, 795
BmsI GCATC 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 337, 664
BplI GAGNNNNNCTC 2 cut(s) 531, 563
BpmI CTGGAG 2 cut(s) 237, 426
Bpu1102I GCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 2 cut(s) 576, 795
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 82, 149, 574
BsaWI WCCGGW 2 cut(s) 191, 707
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 155, 191, 327
Bse1I ACTGG 2 cut(s) 220, 666
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 82, 149, 574
BseGI GGATG 2 cut(s) 303, 344
BseLI CCNNNNNNNGG 4 cut(s) 88, 155, 191, 327
BseMII CTCAG 3 cut(s) 73, 273, 618
BseNI ACTGG 2 cut(s) 220, 666
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 4 cut(s) 55, 67, 128, 156
BseYI CCCAGC 2 cut(s) 240, 251
BsgI GTGCAG 2 cut(s) 74, 534
BshFI GGCC 6 cut(s) 45, 159, 184, 320, 544, 665
BsiHKAI GWGCWC 2 cut(s) 297, 648
BsiHKCI CYCGRG 3 cut(s) 269, 296, 326
BsiSI CCGG 4 cut(s) 192, 576, 708, 795
BslFI GGGAC 3 cut(s) 257, 444, 729
BslI CCNNNNNNNGG 4 cut(s) 88, 155, 191, 327
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 3 cut(s) 257, 444, 729
BsnI GGCC 6 cut(s) 45, 159, 184, 320, 544, 665
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 3 cut(s) 269, 296, 326
Bsp1286I GDGCHC 5 cut(s) 258, 297, 334, 412, 648
Bsp143I GATC 3 cut(s) 265, 501, 610
Bsp1720I GCTNAGC 1 cut(s) 627
BspACI CCGC 2 cut(s) 114, 536
BspANI GGCC 6 cut(s) 45, 159, 184, 320, 544, 665
BspCNI CTCAG 3 cut(s) 72, 272, 619
BspLI GGNNCC 4 cut(s) 183, 201, 409, 717
BspPI GGATC 2 cut(s) 260, 605
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 220, 666
BssECI CCNNGG 3 cut(s) 82, 149, 574
BssMI GATC 3 cut(s) 265, 501, 610
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 167, 290
BstAFI CTTAAG 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 43, 603
BstDEI CTNAG 4 cut(s) 59, 259, 457, 627
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 303, 344
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 3 cut(s) 268, 504, 613
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 265, 501, 610
BstMWI GCNNNNNNNGC 2 cut(s) 47, 488
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 226, 574, 793
BstSFI CTRYAG 1 cut(s) 526
BstV1I GCAGC 4 cut(s) 55, 67, 128, 156
BstV2I GAAGAC 2 cut(s) 337, 664
BsuRI GGCC 6 cut(s) 45, 159, 184, 320, 544, 665
BtsCI GGATG 2 cut(s) 303, 344
BtsIMutI CAGTG 2 cut(s) 213, 427
Cac8I GCNNGC 2 cut(s) 43, 603
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 5 cut(s) 158, 182, 318, 542, 716
Csp6I GTAC 4 cut(s) 154, 175, 571, 692
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 4 cut(s) 103, 322, 667, 676
CviQI GTAC 4 cut(s) 154, 175, 571, 692
DdeI CTNAG 4 cut(s) 59, 259, 457, 627
DpnI GATC 3 cut(s) 267, 503, 612
DpnII GATC 3 cut(s) 265, 501, 610
EaeI YGGCCR 2 cut(s) 43, 663
Ecl136II GAGCTC 2 cut(s) 295, 646
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 5 cut(s) 258, 297, 334, 412, 648
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 716
Eco53kI GAGCTC 2 cut(s) 295, 646
Eco88I CYCGRG 3 cut(s) 269, 296, 326
EcoICRI GAGCTC 2 cut(s) 295, 646
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 5 cut(s) 258, 297, 334, 412, 648
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 4 cut(s) 106, 325, 670, 679
FaiI YATR 6 cut(s) 104, 323, 668, 677, 775, 777
FaqI GGGAC 3 cut(s) 257, 444, 729
FatI CATG 4 cut(s) 102, 321, 666, 675
FauI CCCGC 1 cut(s) 529
FauNDI CATATG 1 cut(s) 775
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 5 cut(s) 6, 56, 69, 117, 145
FokI GGATG 2 cut(s) 290, 351
FriOI GRGCYC 5 cut(s) 258, 297, 334, 412, 648
Fsp4HI GCNGC 5 cut(s) 6, 56, 69, 117, 145
FspBI CTAG 4 cut(s) 335, 359, 434, 731
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 1 cut(s) 107
GluI GCNGC 5 cut(s) 6, 56, 69, 117, 145
GsaI CCCAGC 2 cut(s) 244, 255
GsuI CTGGAG 2 cut(s) 237, 426
HaeIII GGCC 6 cut(s) 45, 159, 184, 320, 544, 665
HapII CCGG 4 cut(s) 192, 576, 708, 795
HhaI GCGC 1 cut(s) 108
Hin1II CATG 4 cut(s) 106, 325, 670, 679
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 3 cut(s) 96, 372, 684
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 4 cut(s) 192, 576, 708, 795
HphI GGTGA 6 cut(s) 91, 98, 206, 242, 563, 649
Hpy166II GTNNAC 3 cut(s) 463, 562, 757
Hpy188I TCNGA 2 cut(s) 383, 683
Hpy188III TCNNGA 5 cut(s) 269, 312, 505, 614, 649
Hpy8I GTNNAC 3 cut(s) 463, 562, 757
HpyAV CCTTC 3 cut(s) 42, 515, 634
HpyCH4III ACNGT 2 cut(s) 167, 290
HpyCH4V TGCA 4 cut(s) 55, 71, 515, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 488
HpyF3I CTNAG 4 cut(s) 59, 259, 457, 627
Hsp92II CATG 4 cut(s) 106, 325, 670, 679
HspAI GCGC 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 3 cut(s) 265, 501, 610
LmnI GCTCC 4 cut(s) 205, 407, 582, 643
Lsp1109I GCAGC 4 cut(s) 55, 67, 128, 156
LweI GCATC 1 cut(s) 80
MaeI CTAG 4 cut(s) 335, 359, 434, 731
MaeIII GTNAC 2 cut(s) 230, 703
MalI GATC 3 cut(s) 267, 503, 612
MboI GATC 3 cut(s) 265, 501, 610
MboII GAAGA 3 cut(s) 337, 669, 679
MhlI GDGCHC 5 cut(s) 258, 297, 334, 412, 648
MlsI TGGCCA 2 cut(s) 45, 665
MluCI AATT 1 cut(s) 531
MluNI TGGCCA 2 cut(s) 45, 665
MlyI GAGTC 1 cut(s) 381
Mox20I TGGCCA 2 cut(s) 45, 665
MscI TGGCCA 2 cut(s) 45, 665
MseI TTAA 2 cut(s) 633, 756
Msp20I TGGCCA 2 cut(s) 45, 665
MspA1I CMGCKG 3 cut(s) 68, 251, 263
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 4 cut(s) 192, 576, 708, 795
MspR9I CCNGG 3 cut(s) 228, 576, 795
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 47, 488
NciI CCSGG 2 cut(s) 576, 795
NdeI CATATG 1 cut(s) 775
NdeII GATC 3 cut(s) 265, 501, 610
NlaIII CATG 4 cut(s) 106, 325, 670, 679
NlaIV GGNNCC 4 cut(s) 183, 201, 409, 717
NmuCI GTSAC 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PfeI GAWTC 2 cut(s) 96, 684
PflFI GACNNNGTC 1 cut(s) 167
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 5 cut(s) 7, 57, 70, 118, 146
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp124BI GAGCTC 2 cut(s) 297, 648
Psp6I CCWGG 1 cut(s) 226
PspFI CCCAGC 2 cut(s) 240, 251
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 4 cut(s) 183, 201, 409, 717
PspPI GGNCC 5 cut(s) 158, 182, 318, 542, 716
PspXI VCTCGAGB 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 3 cut(s) 68, 251, 263
RsaI GTAC 4 cut(s) 155, 176, 572, 693
RsaNI GTAC 4 cut(s) 154, 175, 571, 692
SacI GAGCTC 2 cut(s) 297, 648
SaqAI TTAA 2 cut(s) 633, 756
SatI GCNGC 5 cut(s) 6, 56, 69, 117, 145
Sau3AI GATC 3 cut(s) 265, 501, 610
Sau96I GGNCC 5 cut(s) 158, 182, 318, 542, 716
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 3 cut(s) 228, 576, 795
SduI GDGCHC 5 cut(s) 258, 297, 334, 412, 648
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 526
Sfr274I CTCGAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 716
SlaI CTCGAG 1 cut(s) 296
SmlI CTYRAG 3 cut(s) 296, 632, 647
SmoI CTYRAG 3 cut(s) 296, 632, 647
Sse9I AATT 1 cut(s) 531
SsiI CCGC 2 cut(s) 114, 536
SspMI CTAG 4 cut(s) 335, 359, 434, 731
SstI GAGCTC 2 cut(s) 297, 648
StyD4I CCNGG 3 cut(s) 226, 574, 793
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 167, 290
TaqI TCGA 1 cut(s) 297
TaqII GACCGA 1 cut(s) 733
TasI AATT 1 cut(s) 531
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 2 cut(s) 96, 684
Tru1I TTAA 2 cut(s) 633, 756
Tru9I TTAA 2 cut(s) 633, 756
TscAI CASTG 2 cut(s) 220, 427
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 5 cut(s) 5, 55, 68, 116, 144
Tsp45I GTSAC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 2 cut(s) 220, 427
Tth111I GACNNNGTC 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 716
XagI CCTNNNNNAGG 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 4 cut(s) 335, 359, 434, 731
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.