FvH4_6g41000

Chlorophyll a-b binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000275
Physical Location & Seq
Forward (+)
32379218 .. 32380339
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41000.t1

Sequence Viewer

Length: 558 bp
ATGGCAACCTCTCCGATCCAGCAGTCTGCATTTGCCAGCCAGACCGTTCTGAAGCTGTCGAATGAGCTCATTCAAAAGATTGGCGGCCTTGGTGATGGCCGCATCACCATGAGGCGCACTGTTAAAAGTGCCCCCGAAAGCATATGGTATGGCGCAGACCGTCCAAAATACTTGGGCCCATTTTCTGAGCAAACTCCATCCTACTTAAGCGGTGAATTTCCAGGTGACTATGGATGGGACACTGCTGGACTATCTGCAGACCCCAAGACCTTCGCCAAGAACCATGAGCTTGAGGTGATCCACTGCCGGTGGGCCATGGTTGGTGCATTGGGCTGTGTCTTCCCAAAGGTCTTGTCCAAGAACGGTGTCAAGTTTGATGAAGCTGATTGGTTCAAGGCCGGGTCTCAAATCTTCTCCGGGGGCGGCCTGGACTACCTAGGCAACCCAAACCTTGCCCATGCCCAAAGCATCCTGGCCATCTGGGCTGTCCAGGTTGTGCTCATGGGATTCATTGAGGGATACAGAGTTGGTGGAGGACCACTTGGTGAAGGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

186

Amino Acids

19.88

Weight (kDa)

6.29

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 66 - 179 4.9e-27 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 100, 210, 423
AclWI GGATC 2 cut(s) 10, 292
AcoI YGGCCR 2 cut(s) 97, 474
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 71
AdeI CACNNNGTG 1 cut(s) 545
AflII CTTAAG 1 cut(s) 205
AgsI TTSAA 2 cut(s) 74, 394
AjnI CCWGG 4 cut(s) 220, 426, 471, 489
AluBI AGCT 4 cut(s) 55, 67, 289, 383
AluI AGCT 4 cut(s) 55, 67, 289, 383
Alw21I GWGCWC 2 cut(s) 69, 501
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 2 cut(s) 10, 292
AoxI GGCC 8 cut(s) 85, 97, 175, 312, 396, 424, 474, 551
ApaI GGGCCC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspA2I CCTAGG 1 cut(s) 436
AspLEI GCGC 2 cut(s) 117, 155
AspS9I GGNCC 5 cut(s) 175, 176, 312, 536, 551
AsuC2I CCSGG 2 cut(s) 400, 418
AsuHPI GGTGA 6 cut(s) 97, 104, 224, 236, 307, 557
AvaII GGWCC 1 cut(s) 536
AvrII CCTAGG 1 cut(s) 436
BaeGI GKGCMC 2 cut(s) 133, 179
BalI TGGCCA 1 cut(s) 476
BanII GRGCYC 2 cut(s) 69, 179
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 2 cut(s) 69, 501
BccI CCATC 4 cut(s) 89, 205, 228, 485
BciT130I CCWGG 4 cut(s) 222, 428, 473, 491
BciVI GTATCC 1 cut(s) 512
BcnI CCSGG 2 cut(s) 400, 418
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 255
BfrI CTTAAG 1 cut(s) 205
BfuI GTATCC 1 cut(s) 512
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 3 cut(s) 85, 100, 424
BlnI CCTAGG 1 cut(s) 436
BlsI GCNGC 3 cut(s) 86, 101, 425
Bme1390I CCNGG 6 cut(s) 222, 400, 418, 428, 473, 491
Bme18I GGWCC 1 cut(s) 536
BmgT120I GGNCC 5 cut(s) 175, 176, 312, 536, 551
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 6 cut(s) 222, 400, 418, 428, 473, 491
BmsI GCATC 2 cut(s) 111, 477
BpiI GAAGAC 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 2 cut(s) 400, 418
BsaI GGTCTC 1 cut(s) 408
BsaJI CCNNGG 4 cut(s) 88, 315, 417, 436
Bse118I RCCGGY 1 cut(s) 306
BseBI CCWGG 4 cut(s) 222, 428, 473, 491
BseDI CCNNGG 4 cut(s) 88, 315, 417, 436
BseGI GGATG 3 cut(s) 197, 239, 468
BseMII CTCAG 1 cut(s) 177
BseSI GKGCMC 2 cut(s) 133, 179
BshFI GGCC 8 cut(s) 87, 99, 177, 314, 398, 426, 476, 553
BsiHKAI GWGCWC 2 cut(s) 69, 501
BsiSI CCGG 3 cut(s) 307, 399, 417
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 8 cut(s) 87, 99, 177, 314, 398, 426, 476, 553
Bso31I GGTCTC 1 cut(s) 408
Bsp120I GGGCCC 1 cut(s) 175
Bsp1286I GDGCHC 4 cut(s) 69, 133, 179, 501
Bsp143I GATC 2 cut(s) 15, 297
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 4 cut(s) 84, 100, 210, 423
BspANI GGCC 8 cut(s) 87, 99, 177, 314, 398, 426, 476, 553
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 2 cut(s) 10, 292
BspTI CTTAAG 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 4 cut(s) 88, 315, 417, 436
BssMI GATC 2 cut(s) 15, 297
BssT1I CCWWGG 3 cut(s) 88, 315, 436
Bst2UI CCWGG 4 cut(s) 222, 428, 473, 491
Bst4CI ACNGT 4 cut(s) 46, 121, 161, 365
BstAFI CTTAAG 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 3 cut(s) 197, 239, 468
BstHHI GCGC 2 cut(s) 117, 155
BstKTI GATC 2 cut(s) 18, 300
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 2 cut(s) 15, 297
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 4 cut(s) 222, 428, 473, 491
BstSCI CCNGG 6 cut(s) 220, 398, 416, 426, 471, 489
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 2 cut(s) 133, 179
BstV2I GAAGAC 1 cut(s) 331
BsuI GTATCC 1 cut(s) 512
BsuRI GGCC 8 cut(s) 87, 99, 177, 314, 398, 426, 476, 553
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 197, 239, 468
BtsI GCAGTG 2 cut(s) 240, 301
BtsIMutI CAGTG 3 cut(s) 117, 240, 301
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 2 cut(s) 117, 155
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 5 cut(s) 175, 176, 312, 536, 551
CviAII CATG 5 cut(s) 109, 284, 316, 458, 502
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 17, 299
DpnII GATC 2 cut(s) 15, 297
DraIII CACNNNGTG 1 cut(s) 545
EaeI YGGCCR 2 cut(s) 97, 474
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 3 cut(s) 88, 315, 436
Eco24I GRGCYC 2 cut(s) 69, 179
Eco31I GGTCTC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 536
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 551
EcoRII CCWGG 4 cut(s) 220, 426, 471, 489
EcoT14I CCWWGG 3 cut(s) 88, 315, 436
EcoT38I GRGCYC 2 cut(s) 69, 179
ErhI CCWWGG 3 cut(s) 88, 315, 436
FaeI CATG 5 cut(s) 112, 287, 319, 461, 505
FaiI YATR 9 cut(s) 110, 143, 145, 150, 231, 285, 317, 459, 503
FaqI GGGAC 1 cut(s) 251
FatI CATG 5 cut(s) 108, 283, 315, 457, 501
FauNDI CATATG 1 cut(s) 143
Fnu4HI GCNGC 3 cut(s) 85, 100, 424
FokI GGATG 3 cut(s) 184, 246, 455
FriOI GRGCYC 2 cut(s) 69, 179
Fsp4HI GCNGC 3 cut(s) 85, 100, 424
FspBI CTAG 1 cut(s) 437
GlaI GCGC 2 cut(s) 116, 154
GluI GCNGC 3 cut(s) 85, 100, 424
HaeIII GGCC 8 cut(s) 87, 99, 177, 314, 398, 426, 476, 553
HapII CCGG 3 cut(s) 307, 399, 417
HhaI GCGC 2 cut(s) 117, 155
Hin1II CATG 5 cut(s) 112, 287, 319, 461, 505
Hin6I GCGC 2 cut(s) 115, 153
HinP1I GCGC 2 cut(s) 115, 153
HinfI GANTC 1 cut(s) 507
HpaII CCGG 3 cut(s) 307, 399, 417
HphI GGTGA 6 cut(s) 97, 104, 224, 236, 307, 557
Hpy188I TCNGA 3 cut(s) 15, 51, 187
HpyAV CCTTC 2 cut(s) 280, 542
HpyCH4III ACNGT 4 cut(s) 46, 121, 161, 365
HpyCH4V TGCA 3 cut(s) 29, 257, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 5 cut(s) 112, 287, 319, 461, 505
HspAI GCGC 2 cut(s) 115, 153
Kzo9I GATC 2 cut(s) 15, 297
LweI GCATC 2 cut(s) 111, 477
MaeI CTAG 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 17, 299
MboI GATC 2 cut(s) 15, 297
MboII GAAGA 2 cut(s) 331, 403
MhlI GDGCHC 4 cut(s) 69, 133, 179, 501
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 476
MnlI CCTC 5 cut(s) 19, 105, 286, 508, 527
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
MseI TTAA 2 cut(s) 123, 206
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 205
MspI CCGG 3 cut(s) 307, 399, 417
MspR9I CCNGG 6 cut(s) 222, 400, 418, 428, 473, 491
MvaI CCWGG 4 cut(s) 222, 428, 473, 491
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 2 cut(s) 400, 418
NcoI CCATGG 1 cut(s) 315
NdeI CATATG 1 cut(s) 143
NdeII GATC 2 cut(s) 15, 297
NlaIII CATG 5 cut(s) 112, 287, 319, 461, 505
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 507
PkrI GCNGC 3 cut(s) 86, 101, 425
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 4 cut(s) 220, 426, 471, 489
PspGI CCWGG 4 cut(s) 220, 426, 471, 489
PspN4I GGNNCC 1 cut(s) 177
PspOMI GGGCCC 1 cut(s) 175
PspPI GGNCC 5 cut(s) 175, 176, 312, 536, 551
PstI CTGCAG 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 123, 206
SatI GCNGC 3 cut(s) 85, 100, 424
Sau3AI GATC 2 cut(s) 15, 297
Sau96I GGNCC 5 cut(s) 175, 176, 312, 536, 551
ScrFI CCNGG 6 cut(s) 222, 400, 418, 428, 473, 491
SduI GDGCHC 4 cut(s) 69, 133, 179, 501
SfaNI GCATC 2 cut(s) 111, 477
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 536
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 205, 290
SmoI CTYRAG 2 cut(s) 205, 290
Sse9I AATT 1 cut(s) 215
SsiI CCGC 4 cut(s) 84, 100, 210, 423
SspMI CTAG 1 cut(s) 437
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 6 cut(s) 220, 398, 416, 426, 471, 489
StyI CCWWGG 3 cut(s) 88, 315, 436
TaaI ACNGT 4 cut(s) 46, 121, 161, 365
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 215
TauI GCSGC 3 cut(s) 87, 102, 426
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 2 cut(s) 123, 206
Tru9I TTAA 2 cut(s) 123, 206
TscAI CASTG 3 cut(s) 124, 247, 308
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 393, 499
TspRI CASTG 3 cut(s) 124, 247, 308
Vha464I CTTAAG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 536
XapI RAATTY 1 cut(s) 215
XmaJI CCTAGG 1 cut(s) 436
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.