Prupe.3G201000_v2.0.a1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
20963264 .. 20964787
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G201000.1

Sequence Viewer

Length: 798 bp
ATGGCAACCTCTGCAATCCAACAATCAGCATTTGCTGGCCAGACTGCTTTGAAGCAGTCAAATGAGCTCATCCGAAAGATTGGCGGCCTTGGTGGCGGCCGCATCACCATGAGGCGCACCGTCAAAAGCACCCCCCAAAGCATATGGTATGGCCCAGACCGCCCAAAATACTTGGGACCATTCTCTGAGCAAACTCCATCATACTTGACTGGTGAATTCCCTGGTGACTACGGATGGGACACTGCTGGACTATCCGCAGACCCTGAGACATTTGCCAAAAACCGTGAGCTTGAGGTGATCCACAGCCGATGGGCCATGCTTGGTGCACTGGGATGTGTCTTCCCAGAAATCCTGTCAAAGAATGGTGTCAAGTTCGGCGAGGCTGTTTGGTTCAAGGCTGGATCTCAAATCTTCTCCGAGGGTGGCCTTGACTATCTTGGCAACCCAAACCTTGTCCATGCCCAGAGCATCTTGGCAATCTGGGCTGTCCAGGTTGTGCTCATGGGATTTGTCGAAGGATACAGGGTTGGTGGAGGACCACTTGGTGAAGGACTGGATCCACTTTACCCTGGAGGGGCCTTTGACCCACTTGGACTGGCTGATGATCCTGAGGCGTTTGCTGAACTGAAGGTGAAAGAGCTTAAGAATGGGCGGCTGGCAATGACTTCAATGTTTGGATTCTTTGTTCAGGCTATTGTAACTGGAAAGGGCCCAGTTGAGAACCTATATGACCATGTTGCTGATCCAGTTGCCAACAATGCATGGGCTTATGCCACCAACTTTGTCCCTGGAAAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

266

Amino Acids

28.48

Weight (kDa)

5.47

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 84, 96, 100, 160, 255, 652
AclWI GGATC 6 cut(s) 292, 409, 551, 564, 599, 737
AcoI YGGCCR 2 cut(s) 37, 97
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 647
AdeI CACNNNGTG 1 cut(s) 545
AfiI CCNNNNNNNGG 1 cut(s) 574
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 3 cut(s) 52, 394, 669
AjnI CCWGG 4 cut(s) 220, 489, 568, 787
AloI GAACNNNNNNTCC 2 cut(s) 669, 701
AluBI AGCT 3 cut(s) 67, 289, 640
AluI AGCT 3 cut(s) 67, 289, 640
Alw21I GWGCWC 3 cut(s) 69, 328, 501
Alw26I GTCTC 1 cut(s) 260
Alw44I GTGCAC 1 cut(s) 324
AlwI GGATC 6 cut(s) 292, 409, 551, 564, 599, 737
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 8 cut(s) 37, 85, 97, 151, 312, 424, 576, 709
ApaI GGGCCC 1 cut(s) 713
ApaLI GTGCAC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 7 cut(s) 152, 176, 312, 536, 576, 709, 710
AsuHPI GGTGA 6 cut(s) 97, 224, 236, 307, 557, 643
AvaII GGWCC 2 cut(s) 176, 536
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 2 cut(s) 328, 713
BalI TGGCCA 1 cut(s) 39
BamHI GGATCC 1 cut(s) 556
BanII GRGCYC 2 cut(s) 69, 713
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 3 cut(s) 69, 328, 501
BccI CCATC 3 cut(s) 205, 228, 303
BciT130I CCWGG 4 cut(s) 222, 491, 570, 789
BciVI GTATCC 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 641
BfuI GTATCC 1 cut(s) 512
BglI GCCNNNNNGGC 1 cut(s) 93
BisI GCNGC 4 cut(s) 85, 97, 100, 653
BlsI GCNGC 4 cut(s) 86, 98, 101, 654
Bme1390I CCNGG 4 cut(s) 222, 491, 570, 789
Bme18I GGWCC 2 cut(s) 176, 536
BmgT120I GGNCC 7 cut(s) 152, 176, 312, 536, 576, 709, 710
BmiI GGNNCC 4 cut(s) 177, 558, 577, 711
BmrFI CCNGG 4 cut(s) 222, 491, 570, 789
BmrI ACTGGG 2 cut(s) 338, 707
BmsI GCATC 2 cut(s) 111, 477
BmuI ACTGGG 2 cut(s) 338, 707
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 5 cut(s) 88, 220, 417, 568, 787
Bsc4I CCNNNNNNNGG 1 cut(s) 574
Bse1I ACTGG 7 cut(s) 214, 333, 558, 600, 706, 713, 746
Bse21I CCTNAGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 4 cut(s) 222, 491, 570, 789
BseDI CCNNGG 5 cut(s) 88, 220, 417, 568, 787
BseGI GGATG 3 cut(s) 69, 239, 338
BseLI CCNNNNNNNGG 1 cut(s) 574
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 3 cut(s) 177, 255, 600
BseNI ACTGG 7 cut(s) 214, 333, 558, 600, 706, 713, 746
BseSI GKGCMC 2 cut(s) 328, 713
BseX3I CGGCCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 8 cut(s) 39, 87, 99, 153, 314, 426, 578, 711
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 3 cut(s) 69, 328, 501
BslFI GGGAC 3 cut(s) 189, 251, 770
BslI CCNNNNNNNGG 1 cut(s) 574
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 3 cut(s) 189, 251, 770
BsnI GGCC 8 cut(s) 39, 87, 99, 153, 314, 426, 578, 711
Bsp120I GGGCCC 1 cut(s) 709
Bsp1286I GDGCHC 4 cut(s) 69, 328, 501, 713
Bsp143I GATC 5 cut(s) 297, 401, 556, 604, 742
BspACI CCGC 6 cut(s) 84, 96, 100, 160, 255, 652
BspANI GGCC 8 cut(s) 39, 87, 99, 153, 314, 426, 578, 711
BspCNI CTCAG 3 cut(s) 178, 256, 601
BspLI GGNNCC 4 cut(s) 177, 558, 577, 711
BspPI GGATC 6 cut(s) 292, 409, 551, 564, 599, 737
BspTI CTTAAG 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 7 cut(s) 214, 333, 558, 600, 706, 713, 746
BssECI CCNNGG 5 cut(s) 88, 220, 417, 568, 787
BssMI GATC 5 cut(s) 297, 401, 556, 604, 742
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 4 cut(s) 222, 491, 570, 789
Bst4CI ACNGT 2 cut(s) 121, 284
BstAFI CTTAAG 1 cut(s) 641
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 37, 657
BstDEI CTNAG 3 cut(s) 186, 264, 609
BstF5I GGATG 3 cut(s) 69, 239, 338
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 5 cut(s) 300, 404, 559, 607, 745
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 5 cut(s) 297, 401, 556, 604, 742
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 5 cut(s) 11, 93, 159, 482, 758
BstNI CCWGG 4 cut(s) 222, 491, 570, 789
BstSCI CCNGG 4 cut(s) 220, 489, 568, 787
BstSLI GKGCMC 2 cut(s) 328, 713
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 2 cut(s) 401, 556
BstYI RGATCY 2 cut(s) 401, 556
BstZI CGGCCG 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 609
BsuI GTATCC 1 cut(s) 512
BsuRI GGCC 8 cut(s) 39, 87, 99, 153, 314, 426, 578, 711
BtsCI GGATG 3 cut(s) 69, 239, 338
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 240, 326
Cac8I GCNNGC 2 cut(s) 37, 657
CaiI CAGNNNCTG 1 cut(s) 263
CciNI GCGGCCGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 7 cut(s) 152, 176, 312, 536, 576, 709, 710
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 6 cut(s) 109, 316, 458, 502, 734, 762
DdeI CTNAG 3 cut(s) 186, 264, 609
DpnI GATC 5 cut(s) 299, 403, 558, 606, 744
DpnII GATC 5 cut(s) 297, 401, 556, 604, 742
DraIII CACNNNGTG 1 cut(s) 545
EaeI YGGCCR 2 cut(s) 37, 97
EagI CGGCCG 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 69, 713
Eco47I GGWCC 2 cut(s) 176, 536
Eco52I CGGCCG 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 647
Eco81I CCTNAGG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 2 cut(s) 576, 709
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 4 cut(s) 220, 489, 568, 787
EcoT14I CCWWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 2 cut(s) 69, 713
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 6 cut(s) 112, 319, 461, 505, 737, 765
FaqI GGGAC 3 cut(s) 189, 251, 770
FatI CATG 6 cut(s) 108, 315, 457, 501, 733, 761
FauNDI CATATG 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 85, 97, 100, 653
FokI GGATG 3 cut(s) 56, 246, 345
FriOI GRGCYC 2 cut(s) 69, 713
Fsp4HI GCNGC 4 cut(s) 85, 97, 100, 653
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 85, 97, 100, 653
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 8 cut(s) 39, 87, 99, 153, 314, 426, 578, 711
HhaI GCGC 1 cut(s) 117
Hin1II CATG 6 cut(s) 112, 319, 461, 505, 737, 765
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 1 cut(s) 678
HphI GGTGA 6 cut(s) 97, 224, 236, 307, 557, 643
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 74, 187, 418
Hpy188III TCNNGA 1 cut(s) 608
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 509, 542, 622
HpyCH4III ACNGT 2 cut(s) 121, 284
HpyCH4V TGCA 3 cut(s) 14, 326, 761
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 93, 159, 482, 758
HpyF3I CTNAG 3 cut(s) 186, 264, 609
Hsp92II CATG 6 cut(s) 112, 319, 461, 505, 737, 765
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 5 cut(s) 297, 401, 556, 604, 742
LweI GCATC 2 cut(s) 111, 477
MaeIII GTNAC 2 cut(s) 224, 697
MalI GATC 5 cut(s) 299, 403, 558, 606, 744
MboI GATC 5 cut(s) 297, 401, 556, 604, 742
MboII GAAGA 2 cut(s) 331, 403
MflI RGATCY 2 cut(s) 401, 556
MhlI GDGCHC 4 cut(s) 69, 328, 501, 713
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 8 cut(s) 19, 105, 286, 373, 412, 527, 566, 604
Mox20I TGGCCA 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 763
MscI TGGCCA 1 cut(s) 39
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 2 cut(s) 107, 331
Msp20I TGGCCA 1 cut(s) 39
MspCI CTTAAG 1 cut(s) 641
MspR9I CCNGG 4 cut(s) 222, 491, 570, 789
MvaI CCWGG 4 cut(s) 222, 491, 570, 789
MwoI GCNNNNNNNGC 5 cut(s) 11, 93, 159, 482, 758
NdeI CATATG 1 cut(s) 143
NdeII GATC 5 cut(s) 297, 401, 556, 604, 742
NlaIII CATG 6 cut(s) 112, 319, 461, 505, 737, 765
NlaIV GGNNCC 4 cut(s) 177, 558, 577, 711
NmuCI GTSAC 1 cut(s) 224
NotI GCGGCCGC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 763
PfeI GAWTC 1 cut(s) 678
PkrI GCNGC 4 cut(s) 86, 98, 101, 654
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 4 cut(s) 220, 489, 568, 787
PspGI CCWGG 4 cut(s) 220, 489, 568, 787
PspN4I GGNNCC 4 cut(s) 177, 558, 577, 711
PspOMI GGGCCC 1 cut(s) 709
PspPI GGNCC 7 cut(s) 152, 176, 312, 536, 576, 709, 710
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 2 cut(s) 401, 556
RseI CAYNNNNRTG 2 cut(s) 107, 331
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 4 cut(s) 85, 97, 100, 653
Sau3AI GATC 5 cut(s) 297, 401, 556, 604, 742
Sau96I GGNCC 7 cut(s) 152, 176, 312, 536, 576, 709, 710
ScrFI CCNGG 4 cut(s) 222, 491, 570, 789
SduI GDGCHC 4 cut(s) 69, 328, 501, 713
SetI ASST 9 cut(s) 11, 69, 291, 297, 453, 495, 633, 642, 726
SfaNI GCATC 2 cut(s) 111, 477
SinI GGWCC 2 cut(s) 176, 536
SmiMI CAYNNNNRTG 2 cut(s) 107, 331
SmlI CTYRAG 2 cut(s) 290, 641
SmoI CTYRAG 2 cut(s) 290, 641
Sse9I AATT 1 cut(s) 215
SsiI CCGC 6 cut(s) 84, 96, 100, 160, 255, 652
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 4 cut(s) 220, 489, 568, 787
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 121, 284
TaqI TCGA 1 cut(s) 513
TasI AATT 1 cut(s) 215
TauI GCSGC 4 cut(s) 87, 99, 102, 655
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 2 cut(s) 247, 333
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 2 cut(s) 247, 333
Vha464I CTTAAG 1 cut(s) 641
VneI GTGCAC 1 cut(s) 324
VpaK11BI GGWCC 2 cut(s) 176, 536
XapI RAATTY 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.