Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000435.1

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

241582 .. 241878

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000435.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgggtgcggttaaaggctacagagttgtcagtgggcctctcggtgaggtggtagacgcattgtaccccggtgggagtttcgacccgttaggccttgcagaagatccaaaagcttttgctgagctaaaggtaaaggagctcaagaatggaagactagctatgttttccatgttcggatttttcgtacaagccgttgttaccgggaaggggccaatcgagaacctggctgatcacttagctgaccctgttaacaacaatgctaggtcatatgccaccaactttgtttccggaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

98

Amino Acids

10.38

Weight (kDa)

6.55

Isoelectric Point (pI)

8.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	65, 186
AfiI	CCNNNNNNNGG	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	5 cut(s)	113, 124, 139, 158, 239
AluI	AGCT	5 cut(s)	113, 124, 139, 158, 239
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	3 cut(s)	35, 91, 209
AspS9I	GGNCC	2 cut(s)	35, 209
AsuC2I	CCSGG	2 cut(s)	69, 202
AsuHPI	GGTGA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	224
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	2 cut(s)	69, 202
BfaI	CTAG	2 cut(s)	155, 261
BfmI	CTRYAG	1 cut(s)	19
BlpI	GCTNAGC	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	69, 202, 224
BmgT120I	GGNCC	2 cut(s)	35, 209
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	3 cut(s)	69, 202, 224
BpiI	GAAGAC	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	69, 202
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	37, 93, 211
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	69, 201, 288
BslI	CCNNNNNNNGG	1 cut(s)	207
BsnI	GGCC	3 cut(s)	37, 93, 211
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	103, 229
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	3 cut(s)	37, 93, 211
BspCNI	CTCAG	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	103, 229
Bst2UI	CCWGG	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	120, 235
BstKTI	GATC	2 cut(s)	106, 232
BstMBI	GATC	2 cut(s)	103, 229
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	67, 200, 222
BstSFI	CTRYAG	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	37, 93, 211
BtsIMutI	CAGTG	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	35, 209
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	64, 185
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	2 cut(s)	64, 185
DdeI	CTNAG	2 cut(s)	120, 235
DpnI	GATC	2 cut(s)	105, 231
DpnII	GATC	2 cut(s)	103, 229
Ecl136II	GAGCTC	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	1 cut(s)	172
FaiI	YATR	4 cut(s)	161, 170, 268, 270
FatI	CATG	1 cut(s)	168
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	155, 261
HaeIII	GGCC	3 cut(s)	37, 93, 211
HapII	CCGG	3 cut(s)	69, 201, 288
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	111
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	69, 201, 288
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	55, 250
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	3 cut(s)	142, 217, 288
Hpy8I	GTNNAC	2 cut(s)	55, 250
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	120, 235
Hsp92II	CATG	1 cut(s)	172
Kpn2I	TCCGGA	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	103, 229
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	82, 209, 214, 236, 258
MaeI	CTAG	2 cut(s)	155, 261
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	105, 231
MboI	GATC	2 cut(s)	103, 229
MboII	GAAGA	2 cut(s)	113, 162
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	40, 48
MroI	TCCGGA	1 cut(s)	287
MseI	TTAA	2 cut(s)	12, 249
MspI	CCGG	3 cut(s)	69, 201, 288
MspR9I	CCNGG	3 cut(s)	69, 202, 224
MvaI	CCWGG	1 cut(s)	224
NciI	CCSGG	2 cut(s)	69, 202
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	2 cut(s)	103, 229
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 189
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	35, 209
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	65, 186
RsaNI	GTAC	2 cut(s)	64, 185
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	12, 249
Sau3AI	GATC	2 cut(s)	103, 229
Sau96I	GGNCC	2 cut(s)	35, 209
ScrFI	CCNGG	3 cut(s)	69, 202, 224
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	9 cut(s)	51, 115, 126, 132, 141, 160, 225, 241, 266
SfcI	CTRYAG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	155, 261
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	3 cut(s)	67, 200, 222
TaqI	TCGA	2 cut(s)	81, 216
Tru1I	TTAA	2 cut(s)	12, 249
Tru9I	TTAA	2 cut(s)	12, 249
TscAI	CASTG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	2 cut(s)	155, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.