MD17G1109600.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
9422610 .. 9423427
818 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1109600.v1.1.491

Sequence Viewer

Length: 729 bp
ATGTATATTCCAAGATATCAGTATCAATCTGTTTACATCCCTTACTTATATATAAATAGCCAAGCCGTCGAGCTTAATCCATCTTCATCTACCCTTATAGGTGACGGCTGGGTCACCATGCTCAAAACCGCAGCCAAGTCCAAAAATGTATCGTCCAGCAGCCCGTGGTACGGTCCGGACCGTGTCAAGTACTTGGGTCCATTCTCTGGTGAATCGCCATCATACCTCACTGGAGAATTCCCTGGTGATTACGGTTGGGACACTGCTGGGCTCTCAGCCTACCAGAGACCTTCGCTAAGAACCTTCGGTGAGGCTGTTTGGTTCAAGGCAGGAGCTCAAATTTTCAGTGAAGGTGGGCTAGACTACTTGGGAAACCCAAGCTTAGTCCATGCTCAAAGCATTTTGGCCATTTGGGCCACACAAGTTATCTTGATGGGTGCCGTGGAGGGCTACAGAATCGCCCGCGGACCACTCGGTGAGGTGACGGACCCGTTATACCCCGGAGGGAGCTTTGACTCATTAGGCCTTGCAGAAGACACAGAGGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAGAATGGAAGATTGGCCATGTTCTCCATGTTTGGATTTTTCGTGCAAGCCATTGTCACCGGAAAGGGACCGATAGAGAACCTAGCTGACCACTTGGCTGACCCCGTTAACAATAATGCTTGGTCATATGCCACAAACTTTGTTCCTGGAAATTGA

Protein Analysis

243

Amino Acids

26.36

Weight (kDa)

4.93

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 105 - 209 2e-21 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 437
AccB7I CCANNNNNTGG 1 cut(s) 206
AccII CGCG 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 3 cut(s) 129, 463, 465
AcoI YGGCCR 2 cut(s) 405, 588
AcsI RAATTY 2 cut(s) 236, 339
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 2 cut(s) 170, 191
AfiI CCNNNNNNNGG 2 cut(s) 170, 206
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 2 cut(s) 241, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 7 cut(s) 73, 335, 381, 510, 556, 571, 659
AluI AGCT 7 cut(s) 73, 335, 381, 510, 556, 571, 659
Alw21I GWGCWC 2 cut(s) 337, 573
Alw26I GTCTC 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 4 cut(s) 405, 414, 523, 588
ApeKI GCWGC 2 cut(s) 131, 159
ApoI RAATTY 2 cut(s) 236, 339
AspS9I GGNCC 7 cut(s) 173, 178, 197, 414, 467, 487, 641
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 9 cut(s) 106, 113, 221, 257, 320, 488, 493, 574, 622
AvaII GGWCC 6 cut(s) 173, 178, 197, 467, 487, 641
BalI TGGCCA 2 cut(s) 407, 590
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 3 cut(s) 273, 337, 573
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 2 cut(s) 337, 573
BbvI GCAGC 2 cut(s) 143, 171
BccI CCATC 3 cut(s) 88, 226, 427
BceAI ACGGC 3 cut(s) 50, 121, 425
BciT130I CCWGG 2 cut(s) 243, 720
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 359, 656
BfmI CTRYAG 1 cut(s) 451
BfrI CTTAAG 1 cut(s) 557
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 2 cut(s) 132, 160
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 2 cut(s) 133, 161
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 3 cut(s) 243, 501, 720
Bme18I GGWCC 6 cut(s) 173, 178, 197, 467, 487, 641
BmgT120I GGNCC 7 cut(s) 173, 178, 197, 414, 467, 487, 641
BmiI GGNNCC 4 cut(s) 198, 439, 489, 642
BmrFI CCNGG 3 cut(s) 243, 501, 720
BpiI GAAGAC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 5 cut(s) 164, 241, 441, 463, 499
BsaWI WCCGGW 2 cut(s) 175, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 206
Bse1I ACTGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 2 cut(s) 243, 720
BseDI CCNNGG 5 cut(s) 164, 241, 441, 463, 499
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 170, 206
BseMII CTCAG 2 cut(s) 288, 543
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 143, 171
BseYI CCCAGC 2 cut(s) 108, 266
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 4 cut(s) 407, 416, 525, 590
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 2 cut(s) 337, 573
BsiSI CCGG 3 cut(s) 176, 501, 633
BslFI GGGAC 2 cut(s) 272, 654
BslI CCNNNNNNNGG 2 cut(s) 170, 206
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 272, 654
BsnI GGCC 4 cut(s) 407, 416, 525, 590
Bso31I GGTCTC 1 cut(s) 280
Bsp1286I GDGCHC 3 cut(s) 273, 337, 573
Bsp13I TCCGGA 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 3 cut(s) 129, 463, 465
BspANI GGCC 4 cut(s) 407, 416, 525, 590
BspCNI CTCAG 2 cut(s) 287, 544
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 4 cut(s) 198, 439, 489, 642
BspT107I GGYRCC 1 cut(s) 437
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 5 cut(s) 164, 241, 441, 463, 499
Bst2UI CCWGG 2 cut(s) 243, 720
Bst4CI ACNGT 3 cut(s) 173, 182, 254
BstAFI CTTAAG 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 463, 621
BstDEI CTNAG 4 cut(s) 274, 296, 382, 552
BstDSI CCRYGG 3 cut(s) 164, 441, 463
BstEII GGTNACC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 465
BstMAI GTCTC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 2 cut(s) 243, 720
BstPI GGTNACC 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 241, 499, 718
BstSFI CTRYAG 1 cut(s) 451
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 143, 171
BstV2I GAAGAC 1 cut(s) 540
BsuRI GGCC 4 cut(s) 407, 416, 525, 590
BtgI CCRYGG 3 cut(s) 164, 441, 463
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 228, 261, 352
Cac8I GCNNGC 2 cut(s) 463, 621
Cfr13I GGNCC 7 cut(s) 173, 178, 197, 414, 467, 487, 641
Cfr42I CCGCGG 1 cut(s) 466
CpoI CGGWCCG 2 cut(s) 173, 178
Csp6I GTAC 2 cut(s) 169, 190
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CspI CGGWCCG 2 cut(s) 173, 178
CviAII CATG 4 cut(s) 118, 389, 592, 601
CviQI GTAC 2 cut(s) 169, 190
DdeI CTNAG 4 cut(s) 274, 296, 382, 552
DraIII CACNNNGTG 1 cut(s) 476
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 2 cut(s) 405, 588
Ecl136II GAGCTC 2 cut(s) 335, 571
Eco147I AGGCCT 1 cut(s) 525
Eco24I GRGCYC 3 cut(s) 273, 337, 573
Eco31I GGTCTC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 17
Eco47I GGWCC 6 cut(s) 173, 178, 197, 467, 487, 641
Eco53kI GAGCTC 2 cut(s) 335, 571
Eco91I GGTNACC 1 cut(s) 112
EcoICRI GAGCTC 2 cut(s) 335, 571
EcoO65I GGTNACC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 241, 718
EcoRV GATATC 1 cut(s) 17
EcoT38I GRGCYC 3 cut(s) 273, 337, 573
FaeI CATG 4 cut(s) 121, 392, 595, 604
FaqI GGGAC 2 cut(s) 272, 654
FatI CATG 4 cut(s) 117, 388, 591, 600
FauI CCCGC 1 cut(s) 470
FauNDI CATATG 1 cut(s) 700
Fnu4HI GCNGC 2 cut(s) 132, 160
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 3 cut(s) 273, 337, 573
Fsp4HI GCNGC 2 cut(s) 132, 160
FspBI CTAG 2 cut(s) 359, 656
GluI GCNGC 2 cut(s) 132, 160
GsaI CCCAGC 2 cut(s) 112, 270
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 4 cut(s) 407, 416, 525, 590
HapII CCGG 3 cut(s) 176, 501, 633
Hin1II CATG 4 cut(s) 121, 392, 595, 604
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 3 cut(s) 212, 456, 515
HpaI GTTAAC 1 cut(s) 682
HpaII CCGG 3 cut(s) 176, 501, 633
HphI GGTGA 9 cut(s) 106, 113, 221, 257, 320, 488, 493, 574, 622
Hpy166II GTNNAC 2 cut(s) 34, 682
Hpy188III TCNNGA 3 cut(s) 176, 430, 574
Hpy8I GTNNAC 2 cut(s) 34, 682
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 300, 313, 344, 559
HpyCH4III ACNGT 3 cut(s) 173, 182, 254
HpyCH4V TGCA 2 cut(s) 530, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 4 cut(s) 274, 296, 382, 552
Hsp92II CATG 4 cut(s) 121, 392, 595, 604
Kpn2I TCCGGA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 682
KspI CCGCGG 1 cut(s) 466
LmnI GCTCC 3 cut(s) 332, 507, 568
Lsp1109I GCAGC 2 cut(s) 143, 171
MaeI CTAG 2 cut(s) 359, 656
MaeIII GTNAC 4 cut(s) 101, 112, 481, 628
MboII GAAGA 3 cut(s) 75, 545, 594
MhlI GDGCHC 3 cut(s) 273, 337, 573
MlsI TGGCCA 2 cut(s) 407, 590
MluCI AATT 3 cut(s) 236, 339, 724
MluNI TGGCCA 2 cut(s) 407, 590
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 6 cut(s) 236, 304, 439, 472, 497, 535
Mox20I TGGCCA 2 cut(s) 407, 590
MroI TCCGGA 1 cut(s) 175
MscI TGGCCA 2 cut(s) 407, 590
MseI TTAA 3 cut(s) 75, 558, 681
Msp20I TGGCCA 2 cut(s) 407, 590
MspA1I CMGCKG 1 cut(s) 465
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 3 cut(s) 176, 501, 633
MspR9I CCNGG 3 cut(s) 243, 501, 720
MvaI CCWGG 2 cut(s) 243, 720
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 413
NciI CCSGG 1 cut(s) 501
NdeI CATATG 1 cut(s) 700
NlaIII CATG 4 cut(s) 121, 392, 595, 604
NlaIV GGNNCC 4 cut(s) 198, 439, 489, 642
NmuCI GTSAC 4 cut(s) 101, 112, 481, 628
PceI AGGCCT 1 cut(s) 525
PfeI GAWTC 2 cut(s) 212, 456
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 2 cut(s) 133, 161
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp124BI GAGCTC 2 cut(s) 337, 573
Psp6I CCWGG 2 cut(s) 241, 718
PspEI GGTNACC 1 cut(s) 112
PspFI CCCAGC 2 cut(s) 108, 266
PspGI CCWGG 2 cut(s) 241, 718
PspN4I GGNNCC 4 cut(s) 198, 439, 489, 642
PspPI GGNCC 7 cut(s) 173, 178, 197, 414, 467, 487, 641
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 2 cut(s) 170, 191
RsaNI GTAC 2 cut(s) 169, 190
Rsr2I CGGWCCG 2 cut(s) 173, 178
RsrII CGGWCCG 2 cut(s) 173, 178
SacI GAGCTC 2 cut(s) 337, 573
SacII CCGCGG 1 cut(s) 466
SaqAI TTAA 3 cut(s) 75, 558, 681
SatI GCNGC 2 cut(s) 132, 160
Sau96I GGNCC 7 cut(s) 173, 178, 197, 414, 467, 487, 641
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 3 cut(s) 243, 501, 720
SduI GDGCHC 3 cut(s) 273, 337, 573
SfcI CTRYAG 1 cut(s) 451
SfiI GGCCNNNNNGGCC 1 cut(s) 413
Sfr303I CCGCGG 1 cut(s) 466
SgrBI CCGCGG 1 cut(s) 466
SinI GGWCC 6 cut(s) 173, 178, 197, 467, 487, 641
SmlI CTYRAG 2 cut(s) 557, 572
SmoI CTYRAG 2 cut(s) 557, 572
Sse9I AATT 3 cut(s) 236, 339, 724
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 3 cut(s) 129, 463, 465
SspMI CTAG 2 cut(s) 359, 656
SstI GAGCTC 2 cut(s) 337, 573
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 3 cut(s) 241, 499, 718
TaaI ACNGT 3 cut(s) 173, 182, 254
TaqI TCGA 1 cut(s) 69
TaqII GACCGA 1 cut(s) 658
TasI AATT 3 cut(s) 236, 339, 724
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 2 cut(s) 212, 456
Tru1I TTAA 3 cut(s) 75, 558, 681
Tru9I TTAA 3 cut(s) 75, 558, 681
TscAI CASTG 3 cut(s) 235, 268, 352
TseFI GTSAC 4 cut(s) 101, 112, 481, 628
TseI GCWGC 2 cut(s) 131, 159
Tsp45I GTSAC 4 cut(s) 101, 112, 481, 628
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 3 cut(s) 235, 268, 352
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 206
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 6 cut(s) 173, 178, 197, 467, 487, 641
XapI RAATTY 2 cut(s) 236, 339
XspI CTAG 2 cut(s) 359, 656
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.