FvH4_7g12570

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000446
Physical Location & Seq
Forward (+)
11388894 .. 11390392
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12570.t2

Sequence Viewer

Length: 981 bp
ATGGGAGATGACAGTCCCAGTGAGCTCCCAACAGTTCTGGTACTCCAACGATCCCCAACCATTGCTCTCTTGGAACCCTCATGCTCCCAAAAGTTCAACCTCCTCAAAGCCTGGGACTCTCCTCTCCCTCAAGACCAATTCTTGACCACCCACGCCGGTTCTGTCCAGGCCCTCATCGCCCCCGTCCATGGGCCCCCCATCACCGCCCAAATCCTCCAGTCCCTCCCCTCCCTCAAATTCATAACCACCACCAGCGCCGGCCTCGACCACGTTGACTTGGCCGAGTGTCAACGCCGCGGCGTTGCCGTCGCCAACGCCTCTAAAGCCTTTGCAGAGGACGCTGCTGACATGGCCGTGGGGCTCTTCATTGATGTCATGAGGAAGATTTCGGCTTCGAATCGGTATGTCAGAGATGGGCTCTGGGCTACCAGAGGTGACTATCCTCTTGGTTCCAAGATTGGAGGAAAGACGGTTGGTATTGTCGGATTGGGAAACATTGGGTTAGGAGTTGCAAAGAGATTGGAGGCATTTGGGTGCAGGGTGTTGTATAATTCGAGGAGCGAAAGGCCTTCTTTGTCGTACCGATATTATTCCGATGTGTGTGAGCTTGCAGCAGAGAGTGATGCTCTTATAATATGCTGTGCGTTGACAGAGCAAACCCACCACATGATCAACAAGGAGGTTTTGTGTGCGTTGGGAAGGGAGGGGGTGATTGTTAATGTAGGCCGCGGGGCTATTATTGATGAGAAGGAAATGGTGAGGTGTTTGGTGCGAGGAGAGATTGCGGGTGCTGGGTTGGATGTGTTTGAGAATGAGCCTGATGTTCCGAAAGAGCTCTTTGGACTGGATAATGTTGTACTGTCACCGCATCAAGCTGTTGTTACGCCTGAATCTATGGTGGGTTTGAGTGAAGTAGTAACAGAGAATTTGGAAGCGTTCTTCTCAAACAAACCATTGCTTTCTCCGGCTGTGATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

327

Amino Acids

34.95

Weight (kDa)

5.15

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 35 - 321 1.5e-20 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 120 - 292 5.5e-51 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AccII CGCG 2 cut(s) 297, 729
AciI CCGC 7 cut(s) 204, 295, 297, 727, 729, 785, 866
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 2 cut(s) 279, 351
AcsI RAATTY 2 cut(s) 236, 925
AfaI GTAC 3 cut(s) 42, 581, 858
AfiI CCNNNNNNNGG 2 cut(s) 188, 189
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 2 cut(s) 110, 165
AluBI AGCT 4 cut(s) 25, 607, 835, 875
AluI AGCT 4 cut(s) 25, 607, 835, 875
Alw21I GWGCWC 2 cut(s) 27, 837
AlwI GGATC 1 cut(s) 45
AoxI GGCC 7 cut(s) 168, 191, 259, 279, 351, 566, 724
ApaI GGGCCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 341, 611
ApoI RAATTY 2 cut(s) 236, 925
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 3 cut(s) 169, 191, 192
AsuHPI GGTGA 5 cut(s) 193, 446, 721, 769, 855
AsuII TTCGAA 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 195
BanII GRGCYC 5 cut(s) 27, 195, 363, 420, 837
Bbv12I GWGCWC 2 cut(s) 27, 837
BbvI GCAGC 2 cut(s) 328, 623
BccI CCATC 2 cut(s) 206, 407
BceAI ACGGC 2 cut(s) 290, 338
BciT130I CCWGG 2 cut(s) 112, 167
BclI TGATCA 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 5 cut(s) 295, 298, 342, 612, 727
BlsI GCNGC 5 cut(s) 296, 299, 343, 613, 728
Bme1390I CCNGG 2 cut(s) 112, 167
BmgT120I GGNCC 3 cut(s) 169, 191, 192
BmiI GGNNCC 4 cut(s) 75, 193, 194, 451
BmrFI CCNGG 2 cut(s) 112, 167
BmrI ACTGGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 613, 877
BmuI ACTGGG 1 cut(s) 12
BplI GAGNNNNNCTC 4 cut(s) 402, 434, 610, 642
BpmI CTGGAG 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 111, 187, 295, 354, 727
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 189
Bse118I RCCGGY 2 cut(s) 155, 257
Bse1I ACTGG 3 cut(s) 18, 217, 849
Bse3DI GCAATG 2 cut(s) 60, 953
BseBI CCWGG 2 cut(s) 112, 167
BseDI CCNNGG 5 cut(s) 111, 187, 295, 354, 727
BseGI GGATG 1 cut(s) 805
BseLI CCNNNNNNNGG 2 cut(s) 188, 189
BseMI GCAATG 2 cut(s) 60, 953
BseNI ACTGG 3 cut(s) 18, 217, 849
BseRI GAGGAG 4 cut(s) 92, 111, 571, 789
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 328, 623
BseYI CCCAGC 1 cut(s) 791
BsgI GTGCAG 1 cut(s) 556
Bsh1236I CGCG 2 cut(s) 297, 729
BshFI GGCC 7 cut(s) 170, 193, 261, 281, 353, 568, 726
BsiHKAI GWGCWC 2 cut(s) 27, 837
BsiSI CCGG 3 cut(s) 156, 258, 965
BslFI GGGAC 2 cut(s) 128, 205
BslI CCNNNNNNNGG 2 cut(s) 188, 189
BsmFI GGGAC 2 cut(s) 128, 205
BsnI GGCC 7 cut(s) 170, 193, 261, 281, 353, 568, 726
Bsp119I TTCGAA 1 cut(s) 395
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 5 cut(s) 27, 195, 363, 420, 837
Bsp143I GATC 2 cut(s) 50, 669
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 7 cut(s) 204, 295, 297, 727, 729, 785, 866
BspANI GGCC 7 cut(s) 170, 193, 261, 281, 353, 568, 726
BspFNI CGCG 2 cut(s) 297, 729
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 4 cut(s) 75, 193, 194, 451
BspPI GGATC 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 60, 953
BsrFI RCCGGY 2 cut(s) 155, 257
BsrI ACTGG 3 cut(s) 18, 217, 849
BssAI RCCGGY 2 cut(s) 155, 257
BssECI CCNNGG 5 cut(s) 111, 187, 295, 354, 727
BssMI GATC 2 cut(s) 50, 669
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 112, 167
Bst4CI ACNGT 4 cut(s) 14, 34, 472, 861
Bst6I CTCTTC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 259, 609
BstDSI CCRYGG 4 cut(s) 187, 295, 354, 727
BstF5I GGATG 1 cut(s) 805
BstFNI CGCG 2 cut(s) 297, 729
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 2 cut(s) 53, 672
BstMBI GATC 2 cut(s) 50, 669
BstMWI GCNNNNNNNGC 4 cut(s) 176, 323, 338, 350
BstNI CCWGG 2 cut(s) 112, 167
BstSCI CCNGG 2 cut(s) 110, 165
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 2 cut(s) 297, 729
BstV1I GCAGC 2 cut(s) 328, 623
BsuRI GGCC 7 cut(s) 170, 193, 261, 281, 353, 568, 726
BtgI CCRYGG 4 cut(s) 187, 295, 354, 727
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 805
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 259, 609
CciI TCATGA 1 cut(s) 375
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 2 cut(s) 155, 257
Cfr13I GGNCC 3 cut(s) 169, 191, 192
Cfr42I CCGCGG 2 cut(s) 298, 730
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 41, 580, 857
CviAII CATG 5 cut(s) 81, 188, 349, 376, 667
CviQI GTAC 3 cut(s) 41, 580, 857
DpnI GATC 2 cut(s) 52, 671
DpnII GATC 2 cut(s) 50, 669
EaeI YGGCCR 2 cut(s) 279, 351
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Ecl136II GAGCTC 2 cut(s) 25, 835
Eco130I CCWWGG 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 568
Eco24I GRGCYC 5 cut(s) 27, 195, 363, 420, 837
Eco53kI GAGCTC 2 cut(s) 25, 835
EcoICRI GAGCTC 2 cut(s) 25, 835
EcoO109I RGGNCCY 2 cut(s) 169, 192
EcoRII CCWGG 2 cut(s) 110, 165
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 5 cut(s) 27, 195, 363, 420, 837
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 5 cut(s) 84, 191, 352, 379, 670
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 2 cut(s) 128, 205
FatI CATG 5 cut(s) 80, 187, 348, 375, 666
FauI CCCGC 2 cut(s) 722, 778
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 5 cut(s) 295, 298, 342, 612, 727
FokI GGATG 1 cut(s) 812
FriOI GRGCYC 5 cut(s) 27, 195, 363, 420, 837
Fsp4HI GCNGC 5 cut(s) 295, 298, 342, 612, 727
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 295, 298, 342, 612, 727
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 7 cut(s) 170, 193, 261, 281, 353, 568, 726
HapII CCGG 3 cut(s) 156, 258, 965
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 257
Hin1II CATG 5 cut(s) 84, 191, 352, 379, 670
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 3 cut(s) 274, 290, 648
HindII GTYRAC 3 cut(s) 274, 290, 648
HinfI GANTC 3 cut(s) 116, 397, 890
HpaII CCGG 3 cut(s) 156, 258, 965
HphI GGTGA 5 cut(s) 193, 446, 721, 769, 855
Hpy166II GTNNAC 3 cut(s) 274, 290, 648
Hpy188I TCNGA 4 cut(s) 410, 485, 595, 828
Hpy188III TCNNGA 3 cut(s) 131, 142, 376
Hpy8I GTNNAC 3 cut(s) 274, 290, 648
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 579, 693, 742
HpyCH4III ACNGT 4 cut(s) 14, 34, 472, 861
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 332, 512, 537, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 323, 338, 350
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 5 cut(s) 84, 191, 352, 379, 670
HspAI GCGC 1 cut(s) 255
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 669
KspI CCGCGG 2 cut(s) 298, 730
Kzo9I GATC 2 cut(s) 50, 669
LguI GCTCTTC 1 cut(s) 368
LmnI GCTCC 3 cut(s) 30, 89, 558
Lsp1109I GCAGC 2 cut(s) 328, 623
LweI GCATC 2 cut(s) 613, 877
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 4 cut(s) 434, 861, 880, 916
MalI GATC 2 cut(s) 52, 671
MboI GATC 2 cut(s) 50, 669
MboII GAAGA 3 cut(s) 355, 394, 931
MhlI GDGCHC 5 cut(s) 27, 195, 363, 420, 837
MluCI AATT 4 cut(s) 137, 236, 550, 925
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 3 cut(s) 70, 463, 777
MroNI GCCGGC 1 cut(s) 257
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 2 cut(s) 353, 532
MspA1I CMGCKG 2 cut(s) 297, 729
MspI CCGG 3 cut(s) 156, 258, 965
MspR9I CCNGG 2 cut(s) 112, 167
MvaI CCWGG 2 cut(s) 112, 167
MvnI CGCG 2 cut(s) 297, 729
MwoI GCNNNNNNNGC 4 cut(s) 176, 323, 338, 350
NaeI GCCGGC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 187
NdeII GATC 2 cut(s) 50, 669
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 5 cut(s) 84, 191, 352, 379, 670
NlaIV GGNNCC 4 cut(s) 75, 193, 194, 451
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 434, 861
NspV TTCGAA 1 cut(s) 395
PagI TCATGA 1 cut(s) 375
PceI AGGCCT 1 cut(s) 568
PciSI GCTCTTC 1 cut(s) 368
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 397, 890
PkrI GCNGC 5 cut(s) 296, 299, 343, 613, 728
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 1 cut(s) 632
Psp124BI GAGCTC 2 cut(s) 27, 837
Psp6I CCWGG 2 cut(s) 110, 165
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 2 cut(s) 110, 165
PspN4I GGNNCC 4 cut(s) 75, 193, 194, 451
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 3 cut(s) 169, 191, 192
RsaI GTAC 3 cut(s) 42, 581, 858
RsaNI GTAC 3 cut(s) 41, 580, 857
RseI CAYNNNNRTG 2 cut(s) 353, 532
SacI GAGCTC 2 cut(s) 27, 837
SacII CCGCGG 2 cut(s) 298, 730
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 5 cut(s) 295, 298, 342, 612, 727
Sau3AI GATC 2 cut(s) 50, 669
Sau96I GGNCC 3 cut(s) 169, 191, 192
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 112, 167
SduI GDGCHC 5 cut(s) 27, 195, 363, 420, 837
SetI ASST 9 cut(s) 27, 102, 273, 436, 609, 684, 764, 837, 877
SfaNI GCATC 2 cut(s) 613, 877
Sfr303I CCGCGG 2 cut(s) 298, 730
SfuI TTCGAA 1 cut(s) 395
SgrBI CCGCGG 2 cut(s) 298, 730
SmiMI CAYNNNNRTG 2 cut(s) 353, 532
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 4 cut(s) 137, 236, 550, 925
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 7 cut(s) 204, 295, 297, 727, 729, 785, 866
SstI GAGCTC 2 cut(s) 27, 837
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 2 cut(s) 110, 165
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 4 cut(s) 14, 34, 472, 861
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 264, 395, 554
TasI AATT 4 cut(s) 137, 236, 550, 925
TatI WGTACW 1 cut(s) 856
TauI GCSGC 3 cut(s) 297, 300, 729
TfiI GAWTC 2 cut(s) 397, 890
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 2 cut(s) 434, 861
TseI GCWGC 2 cut(s) 341, 611
Tsp45I GTSAC 2 cut(s) 434, 861
TspDTI ATGAA 2 cut(s) 229, 355
TspRI CASTG 1 cut(s) 25
XapI RAATTY 2 cut(s) 236, 925
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.