Rmu_ssc0000403.1_g000015

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000403.1
OG0000446
Physical Location & Seq
Reverse (-)
46016 .. 47540
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000403.1_g000015.1.cds

Sequence Viewer

Length: 579 bp
atggcagatgatgatcacagtgagctccctacagttcttgtacttcgccggtgcccattcattgctctcttggaacccaaatgctcccagaagttcaacttactaaaagcctgggactctcctctccctcaagaccagttcttgaccacccacgcccgctccgtccaggccctcctctcctccggcaatgggcctcccatcacttcccaaatactccagtttctcccctccctcaaactcgtagtcaccaacagcaccggccttgaccacgttgacttggccgagtgtcgacgccgcggcattgcggtcgccaacgccgctaaagtgtttgctgaggacgttgctgacacggctgtggggctgttcattgatgtcatgaggaaggtttcggcttcgaatcggtatgttaggggtgggctgtggccttgcagaggagactatcctcttggttccaagtgcgagtcacttaccgtatggactatgggtgctcacgcatgggtatttcaccccccattcttcgctattggcttttgtcccatctcagtggctgtcttcccttccaggtttgagtctctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

192

Amino Acids

21.09

Weight (kDa)

7.65

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 289
AccII CGCG 1 cut(s) 297
AciI CCGC 5 cut(s) 157, 295, 297, 305, 318
AcoI YGGCCR 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 189, 431
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 3 cut(s) 110, 165, 560
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 2 cut(s) 27, 490
Alw26I GTCTC 1 cut(s) 429
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 5 cut(s) 168, 191, 259, 279, 422
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspS9I GGNCC 2 cut(s) 169, 191
AsuHPI GGTGA 2 cut(s) 238, 497
AsuII TTCGAA 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 2 cut(s) 27, 490
BbvCI CCTCAGC 1 cut(s) 333
BccI CCATC 2 cut(s) 206, 545
BceAI ACGGC 1 cut(s) 366
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 3 cut(s) 112, 167, 562
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 3 cut(s) 295, 298, 318
BlsI GCNGC 3 cut(s) 296, 299, 319
Bme1390I CCNGG 3 cut(s) 112, 167, 562
BmgT120I GGNCC 2 cut(s) 169, 191
BmiI GGNNCC 3 cut(s) 53, 75, 451
BmrFI CCNGG 3 cut(s) 112, 167, 562
BpiI GAAGAC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 111, 295
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 431
Bse118I RCCGGY 2 cut(s) 48, 257
Bse1I ACTGG 2 cut(s) 136, 217
Bse3DI GCAATG 3 cut(s) 60, 193, 300
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 3 cut(s) 112, 167, 562
BseDI CCNNGG 2 cut(s) 111, 295
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 189, 431
BseMI GCAATG 3 cut(s) 60, 193, 300
BseMII CTCAG 2 cut(s) 324, 555
BseNI ACTGG 2 cut(s) 136, 217
BseRI GAGGAG 4 cut(s) 111, 164, 169, 447
BseSI GKGCMC 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 5 cut(s) 170, 193, 261, 281, 424
BshNI GGYRCC 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 2 cut(s) 27, 490
BsiSI CCGG 3 cut(s) 49, 183, 258
BslFI GGGAC 2 cut(s) 128, 519
BslI CCNNNNNNNGG 2 cut(s) 189, 431
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 2 cut(s) 128, 519
BsnI GGCC 5 cut(s) 170, 193, 261, 281, 424
Bsp119I TTCGAA 1 cut(s) 395
Bsp1286I GDGCHC 3 cut(s) 27, 56, 490
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 5 cut(s) 157, 295, 297, 305, 318
BspANI GGCC 5 cut(s) 170, 193, 261, 281, 424
BspCNI CTCAG 2 cut(s) 325, 554
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 53, 75, 451
BspT104I TTCGAA 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 51
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 3 cut(s) 60, 193, 300
BsrFI RCCGGY 2 cut(s) 48, 257
BsrI ACTGG 2 cut(s) 136, 217
BssAI RCCGGY 2 cut(s) 48, 257
BssECI CCNNGG 2 cut(s) 111, 295
BssMI GATC 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 292
Bst2UI CCWGG 3 cut(s) 112, 167, 562
Bst4CI ACNGT 3 cut(s) 20, 34, 472
BstACI GRCGYC 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 333, 541
BstDSI CCRYGG 1 cut(s) 295
BstENI CCTNNNNNAGG 1 cut(s) 429
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 13
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 317, 350
BstNI CCWGG 3 cut(s) 112, 167, 562
BstSCI CCNGG 3 cut(s) 110, 165, 560
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 544
BsuRI GGCC 5 cut(s) 170, 193, 261, 281, 424
BtgI CCRYGG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 25, 549
Cac8I GCNNGC 1 cut(s) 157
CaiI CAGNNNCTG 1 cut(s) 548
CciI TCATGA 1 cut(s) 375
Cfr10I RCCGGY 2 cut(s) 48, 257
Cfr13I GGNCC 2 cut(s) 169, 191
Cfr42I CCGCGG 1 cut(s) 298
CseI GACGC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 376, 495
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 2 cut(s) 333, 541
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 3 cut(s) 110, 165, 560
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 2 cut(s) 379, 498
FaiI YATR 5 cut(s) 377, 405, 475, 482, 496
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 2 cut(s) 128, 519
FatI CATG 2 cut(s) 375, 494
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 13
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 295, 298, 318
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 295, 298, 318
GluI GCNGC 3 cut(s) 295, 298, 318
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 5 cut(s) 170, 193, 261, 281, 424
HapII CCGG 3 cut(s) 49, 183, 258
HgaI GACGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 2 cut(s) 379, 498
HincII GTYRAC 2 cut(s) 274, 290
HindII GTYRAC 2 cut(s) 274, 290
HinfI GANTC 4 cut(s) 116, 397, 461, 569
HpaII CCGG 3 cut(s) 49, 183, 258
HphI GGTGA 2 cut(s) 238, 497
Hpy166II GTNNAC 2 cut(s) 274, 290
Hpy188I TCNGA 1 cut(s) 578
Hpy188III TCNNGA 3 cut(s) 131, 142, 376
Hpy8I GTNNAC 2 cut(s) 274, 290
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 2 cut(s) 376, 567
HpyCH4III ACNGT 3 cut(s) 20, 34, 472
HpyCH4IV ACGT 2 cut(s) 270, 339
HpyCH4V TGCA 1 cut(s) 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 350
HpyF3I CTNAG 2 cut(s) 333, 541
HpySE526I ACGT 2 cut(s) 270, 339
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 2 cut(s) 379, 498
Ksp22I TGATCA 1 cut(s) 13
KspI CCGCGG 1 cut(s) 298
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 3 cut(s) 30, 89, 164
MaeII ACGT 2 cut(s) 270, 339
MaeIII GTNAC 2 cut(s) 244, 462
MalI GATC 1 cut(s) 15
MbiI CCGCTC 1 cut(s) 159
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 508, 544
MhlI GDGCHC 3 cut(s) 27, 56, 490
MlyI GAGTC 3 cut(s) 110, 470, 578
MslI CAYNNNNRTG 2 cut(s) 353, 542
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 3 cut(s) 49, 183, 258
MspR9I CCNGG 3 cut(s) 112, 167, 562
MvaI CCWGG 3 cut(s) 112, 167, 562
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 317, 350
NdeII GATC 1 cut(s) 13
NlaIII CATG 2 cut(s) 379, 498
NlaIV GGNNCC 3 cut(s) 53, 75, 451
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 244, 462
NspV TTCGAA 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 353
PagI TCATGA 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 296, 299, 319
PleI GAGTC 3 cut(s) 110, 469, 577
PpsI GAGTC 3 cut(s) 110, 469, 577
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 3 cut(s) 110, 165, 560
PspGI CCWGG 3 cut(s) 110, 165, 560
PspN4I GGNNCC 3 cut(s) 53, 75, 451
PspPI GGNCC 2 cut(s) 169, 191
PstNI CAGNNNCTG 1 cut(s) 548
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 2 cut(s) 353, 542
SacI GAGCTC 1 cut(s) 27
SacII CCGCGG 1 cut(s) 298
SalI GTCGAC 1 cut(s) 288
SatI GCNGC 3 cut(s) 295, 298, 318
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 2 cut(s) 169, 191
SchI GAGTC 3 cut(s) 110, 470, 578
ScrFI CCNGG 3 cut(s) 112, 167, 562
SduI GDGCHC 3 cut(s) 27, 56, 490
SetI ASST 5 cut(s) 27, 273, 342, 387, 566
SfcI CTRYAG 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 395
SgrAI CRCCGGYG 1 cut(s) 48
SgrBI CCGCGG 1 cut(s) 298
SmiMI CAYNNNNRTG 2 cut(s) 353, 542
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SsiI CCGC 5 cut(s) 157, 295, 297, 305, 318
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 3 cut(s) 110, 165, 560
TaaI ACNGT 3 cut(s) 20, 34, 472
TaiI ACGT 2 cut(s) 273, 342
TaqI TCGA 2 cut(s) 289, 395
TatI WGTACW 1 cut(s) 40
TauI GCSGC 3 cut(s) 297, 300, 320
TfiI GAWTC 1 cut(s) 397
TscAI CASTG 2 cut(s) 25, 549
TseFI GTSAC 2 cut(s) 244, 462
Tsp45I GTSAC 2 cut(s) 244, 462
TspDTI ATGAA 2 cut(s) 49, 355
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 25, 549
XagI CCTNNNNNAGG 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.