Prupe.2G149900_v2.0.a1

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000446
Physical Location & Seq
Forward (+)
20523410 .. 20525862
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G149900.1

Sequence Viewer

Length: 984 bp
ATGGCACTTAATGGAAATCACAGTGAACTCCCACAAGTTCTGGTACTTCTCCCACCTGGGTGCTTCACTCTCTTGGAGTCCAACTACTCCCACAAGTTCAAGTTCCTCAAAGCTTGGGACTCTCCTCTCCCTCAAGACCAGTTCTTGGCCACACATGCAGGCTCTGTTCAGGCCTTGCTGTCCTCTGTCAAAGGACCAACCATCACTGCCAATATCCTACAAATGCTGCCCTCCTTGAAGGTCATTGTCACCACCGGCGCTGGCATTGACCATCTTGACTTAGCCGAGTGTCGAAGCCGCGGTGTTGCCATTGCCAGTACCCCTAAAATCTTCACTGAGGATGTTGCTGATATGGCTGTGGGGCTGCTTCTTGATGTCATGAGAAAGATTTCGGCTGGGGATCGGTATGTCAGAGACGGGCTTTGGGCTACCAGAGGAGACTATGCTCTCGGTTCTAAGATAGGAGGCAACCGAGTTGGGATTGTTGGCTTGGGAAACATTGGCGTAGAAGTTGCCAAAAGACTTGAGGCCTTTGGCTGCAACATATTGTACAACTCAAGGACAGAAAAGCCATTCGTTTCATACCCTTTCTATTCTGATATCTGTGAACTAGCTGCTAACAGTGACGCCCTTGTCATTTGTTGTGCATTGACTGCTGAAACCCACCACCTGATCAACAAGAAAGTCTCGTTAAAGCTGGGAAGAGATGGCGTGATTGTAAACGTAGGACGCGGAGCTATCATCGATGAGAAGGAAATGGTGCGGTGTTTGGTGAAAGGAGAGATTGGAGGTGCTGGTTTGGATGTGTTTGAGGATGAGCCTGAAGTTCCTGAAGAGCTCTTTGCATTGGACAATGTTGTACTGTCACCACATTATGCTACCTACACACCAGAATGTTTCATGGCTTTGTGTGAACTAGTAGCAGGGAATTTCGAAGCTTTCTTCTCAAATAAACCGTTGCTTTCACCGGCTGTGGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

328

Amino Acids

35.24

Weight (kDa)

5.22

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AccB7I CCANNNNNTGG 1 cut(s) 145
AccII CGCG 2 cut(s) 300, 732
AciI CCGC 4 cut(s) 298, 300, 732, 763
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 928
AcuI CTGAAG 2 cut(s) 843, 852
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 4 cut(s) 45, 319, 551, 861
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 2 cut(s) 100, 238
AhlI ACTAGT 1 cut(s) 916
AjnI CCWGG 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 58
AluBI AGCT 6 cut(s) 113, 614, 697, 737, 838, 938
AluI AGCT 6 cut(s) 113, 614, 697, 737, 838, 938
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 3 cut(s) 408, 432, 691
AlwI GGATC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 3 cut(s) 147, 171, 528
ApeKI GCWGC 4 cut(s) 226, 364, 537, 614
ApoI RAATTY 1 cut(s) 928
Asp700I GAANNNNTTC 1 cut(s) 388
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 241, 784, 858, 957
AsuII TTCGAA 1 cut(s) 933
AvaII GGWCC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 4 cut(s) 213, 351, 524, 601
BccI CCATC 3 cut(s) 209, 279, 701
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 3 cut(s) 408, 432, 691
BcuI ACTAGT 1 cut(s) 916
BfaI CTAG 2 cut(s) 611, 917
BfoI RGCGCY 1 cut(s) 261
BisI GCNGC 5 cut(s) 227, 298, 365, 538, 615
BlsI GCNGC 5 cut(s) 228, 299, 366, 539, 616
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 933
BpuEI CTTGAG 3 cut(s) 117, 541, 545
Bsa29I ATCGAT 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 56, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 2 cut(s) 254, 967
Bse1I ACTGG 2 cut(s) 139, 315
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 744
BseDI CCNNGG 2 cut(s) 56, 298
BseGI GGATG 3 cut(s) 346, 808, 820
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 139, 315
BseRI GAGGAG 2 cut(s) 114, 450
BseXI GCAGC 4 cut(s) 213, 351, 524, 601
BseYI CCCAGC 2 cut(s) 395, 697
Bsh1236I CGCG 2 cut(s) 300, 732
BshFI GGCC 3 cut(s) 149, 173, 530
BshVI ATCGAT 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 840
BsiSI CCGG 2 cut(s) 255, 968
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 3 cut(s) 408, 432, 691
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 3 cut(s) 149, 173, 530
Bsp119I TTCGAA 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 840
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 2 cut(s) 400, 672
BspACI CCGC 4 cut(s) 298, 300, 732, 763
BspANI GGCC 3 cut(s) 149, 173, 530
BspCNI CTCAG 1 cut(s) 328
BspDI ATCGAT 1 cut(s) 744
BspFNI CGCG 2 cut(s) 300, 732
BspHI TCATGA 1 cut(s) 378
BspPI GGATC 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 828
BspT104I TTCGAA 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 2 cut(s) 254, 967
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 2 cut(s) 139, 315
BssAI RCCGGY 2 cut(s) 254, 967
BssECI CCNNGG 2 cut(s) 56, 298
BssMI GATC 2 cut(s) 400, 672
BssNI GRCGYC 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 4 cut(s) 23, 623, 864, 957
Bst6I CTCTTC 2 cut(s) 697, 828
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 933
BstC8I GCNNGC 2 cut(s) 160, 262
BstDEI CTNAG 3 cut(s) 280, 336, 456
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 3 cut(s) 346, 808, 820
BstFNI CGCG 2 cut(s) 300, 732
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 2 cut(s) 403, 675
BstMAI GTCTC 3 cut(s) 408, 432, 691
BstMBI GATC 2 cut(s) 400, 672
BstMWI GCNNNNNNNGC 3 cut(s) 155, 353, 653
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 2 cut(s) 300, 732
BstV1I GCAGC 4 cut(s) 213, 351, 524, 601
Bsu15I ATCGAT 1 cut(s) 744
BsuRI GGCC 3 cut(s) 149, 173, 530
BsuTUI ATCGAT 1 cut(s) 744
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 3 cut(s) 346, 808, 820
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 4 cut(s) 28, 204, 333, 628
Cac8I GCNNGC 2 cut(s) 160, 262
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 378
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 2 cut(s) 254, 967
Cfr13I GGNCC 1 cut(s) 194
Cfr42I CCGCGG 1 cut(s) 301
ClaI ATCGAT 1 cut(s) 744
CseI GACGC 2 cut(s) 635, 738
Csp6I GTAC 4 cut(s) 44, 318, 550, 860
CviAII CATG 3 cut(s) 155, 379, 901
CviQI GTAC 4 cut(s) 44, 318, 550, 860
DdeI CTNAG 3 cut(s) 280, 336, 456
DpnI GATC 2 cut(s) 402, 674
DpnII GATC 2 cut(s) 400, 672
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 697, 828
EarI CTCTTC 2 cut(s) 697, 828
Ecl136II GAGCTC 1 cut(s) 838
Eco147I AGGCCT 2 cut(s) 173, 530
Eco24I GRGCYC 1 cut(s) 840
Eco32I GATATC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 838
Eco57I CTGAAG 2 cut(s) 843, 852
EcoICRI GAGCTC 1 cut(s) 838
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 840
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 3 cut(s) 158, 382, 904
FaiI YATR 9 cut(s) 156, 353, 380, 408, 444, 545, 583, 876, 902
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 154, 378, 900
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 227, 298, 365, 538, 615
FokI GGATG 3 cut(s) 353, 815, 827
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 5 cut(s) 227, 298, 365, 538, 615
FspBI CTAG 2 cut(s) 611, 917
GlaI GCGC 1 cut(s) 259
GluI GCNGC 5 cut(s) 227, 298, 365, 538, 615
GsaI CCCAGC 2 cut(s) 399, 701
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 3 cut(s) 149, 173, 530
HapII CCGG 2 cut(s) 255, 968
HgaI GACGC 2 cut(s) 635, 738
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 3 cut(s) 158, 382, 904
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HindIII AAGCTT 2 cut(s) 111, 936
HinfI GANTC 2 cut(s) 77, 119
HpaII CCGG 2 cut(s) 255, 968
HphI GGTGA 4 cut(s) 241, 784, 858, 957
Hpy166II GTNNAC 4 cut(s) 26, 608, 721, 914
Hpy188I TCNGA 2 cut(s) 413, 598
Hpy188III TCNNGA 5 cut(s) 134, 275, 371, 379, 830
Hpy8I GTNNAC 4 cut(s) 26, 608, 721, 914
HpyAV CCTTC 2 cut(s) 232, 745
HpyCH4III ACNGT 4 cut(s) 23, 623, 864, 957
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 4 cut(s) 158, 540, 647, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 353, 653
HpyF3I CTNAG 3 cut(s) 280, 336, 456
HpySE526I ACGT 1 cut(s) 723
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 3 cut(s) 158, 382, 904
HspAI GCGC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 672
KspI CCGCGG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 400, 672
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 1 cut(s) 734
Lsp1109I GCAGC 4 cut(s) 213, 351, 524, 601
MaeI CTAG 2 cut(s) 611, 917
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 3 cut(s) 247, 623, 864
MalI GATC 2 cut(s) 402, 674
MboI GATC 2 cut(s) 400, 672
MboII GAAGA 4 cut(s) 322, 714, 845, 934
MhlI GDGCHC 1 cut(s) 840
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 928, 979
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 2 cut(s) 86, 113
MmeI TCCRAC 1 cut(s) 105
Mox20I TGGCCA 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 388
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 9, 692, 982
MslI CAYNNNNRTG 2 cut(s) 58, 892
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 2 cut(s) 255, 968
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 2 cut(s) 300, 732
MwoI GCNNNNNNNGC 3 cut(s) 155, 353, 653
NdeII GATC 2 cut(s) 400, 672
NlaIII CATG 3 cut(s) 158, 382, 904
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 3 cut(s) 247, 623, 864
NspI RCATGY 1 cut(s) 158
NspV TTCGAA 1 cut(s) 933
OliI CACNNNNGTG 1 cut(s) 58
PagI TCATGA 1 cut(s) 378
PceI AGGCCT 2 cut(s) 173, 530
PciSI GCTCTTC 1 cut(s) 828
PdmI GAANNNNTTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 5 cut(s) 228, 299, 366, 539, 616
PleI GAGTC 2 cut(s) 85, 113
PpsI GAGTC 2 cut(s) 85, 113
Psp124BI GAGCTC 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 2 cut(s) 395, 697
PspGI CCWGG 1 cut(s) 55
PspPI GGNCC 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 4 cut(s) 45, 319, 551, 861
RsaNI GTAC 4 cut(s) 44, 318, 550, 860
RseI CAYNNNNRTG 2 cut(s) 58, 892
SacI GAGCTC 1 cut(s) 840
SacII CCGCGG 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 3 cut(s) 9, 692, 982
SatI GCNGC 5 cut(s) 227, 298, 365, 538, 615
Sau3AI GATC 2 cut(s) 400, 672
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 2 cut(s) 86, 113
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 840
Sfr303I CCGCGG 1 cut(s) 301
SfuI TTCGAA 1 cut(s) 933
SgrAI CRCCGGYG 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 58, 892
SmlI CTYRAG 3 cut(s) 132, 524, 556
SmoI CTYRAG 3 cut(s) 132, 524, 556
SpeI ACTAGT 1 cut(s) 916
Sse9I AATT 2 cut(s) 928, 979
SseBI AGGCCT 2 cut(s) 173, 530
SsiI CCGC 4 cut(s) 298, 300, 732, 763
SspMI CTAG 2 cut(s) 611, 917
SstI GAGCTC 1 cut(s) 840
StuI AGGCCT 2 cut(s) 173, 530
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 4 cut(s) 23, 623, 864, 957
TaiI ACGT 1 cut(s) 726
TaqI TCGA 3 cut(s) 292, 744, 933
TasI AATT 2 cut(s) 928, 979
TatI WGTACW 2 cut(s) 549, 859
TauI GCSGC 1 cut(s) 300
Tru1I TTAA 3 cut(s) 9, 692, 982
Tru9I TTAA 3 cut(s) 9, 692, 982
TscAI CASTG 4 cut(s) 28, 211, 340, 628
TseFI GTSAC 3 cut(s) 247, 623, 864
TseI GCWGC 4 cut(s) 226, 364, 537, 614
Tsp45I GTSAC 3 cut(s) 247, 623, 864
TspDTI ATGAA 2 cut(s) 570, 889
TspRI CASTG 4 cut(s) 28, 211, 340, 628
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 928
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 2 cut(s) 611, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.