Rorug01G0218500

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000446
Physical Location & Seq
Forward (+)
31269035 .. 31269256
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0218500.1

Sequence Viewer

Length: 222 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGAAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCTAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

73

Amino Acids

8.55

Weight (kDa)

8.85

Isoelectric Point (pI)

74.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 78, 160
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 188
AfaI GTAC 1 cut(s) 203
AluBI AGCT 2 cut(s) 130, 193
AluI AGCT 2 cut(s) 130, 193
AlwI GGATC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 1 cut(s) 220
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 78, 160
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 6, 155
BmrFI CCNGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 106, 180, 210
BspACI CCGC 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 6, 155
BspMI ACCTGC 2 cut(s) 78, 160
BspPI GGATC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 3 cut(s) 106, 180, 210
Bst4CI ACNGT 1 cut(s) 163
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 109, 183, 213
BstMBI GATC 3 cut(s) 106, 180, 210
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsCI GGATG 1 cut(s) 37
BveI ACCTGC 2 cut(s) 78, 160
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 70
CviJI RGCY 3 cut(s) 53, 130, 193
CviKI_1 RGCY 3 cut(s) 53, 130, 193
CviQI GTAC 1 cut(s) 202
DpnI GATC 3 cut(s) 108, 182, 212
DpnII GATC 3 cut(s) 106, 180, 210
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 153
FaeI CATG 1 cut(s) 73
FaiI YATR 1 cut(s) 71
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 220
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 1 cut(s) 73
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 3 cut(s) 106, 180, 210
LmnI GCTCC 2 cut(s) 84, 127
LpnPI CCDG 5 cut(s) 29, 67, 73, 155, 203
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 1 cut(s) 220
MalI GATC 3 cut(s) 108, 182, 212
MboI GATC 3 cut(s) 106, 180, 210
MflI RGATCY 1 cut(s) 180
MnlI CCTC 3 cut(s) 22, 131, 171
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 55
NdeII GATC 3 cut(s) 106, 180, 210
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 6, 155
NspI RCATGY 1 cut(s) 73
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 2 cut(s) 94, 117
PkrI GCNGC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 6, 155
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 106, 180, 210
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 55
SetI ASST 5 cut(s) 92, 132, 155, 174, 195
SfcI CTRYAG 2 cut(s) 102, 162
SgeI CNNG 9 cut(s) 28, 40, 66, 67, 82, 100, 136, 182, 202
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SsiI CCGC 1 cut(s) 82
SspMI CTAG 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 213
TfiI GAWTC 2 cut(s) 94, 117
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XspI CTAG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.