Rorug01G0218300

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000446
Physical Location & Seq
Reverse (-)
31224692 .. 31225218
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0218300.1

Sequence Viewer

Length: 291 bp
ATGGATTCATTTGAGCCCTATGGAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAAACAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCCACCCCCACCCCCTGTTATCCCACTAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCATCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

96

Amino Acids

10.31

Weight (kDa)

8.11

Isoelectric Point (pI)

15.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 163
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 226
AspLEI GCGC 2 cut(s) 50, 207
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 1 cut(s) 83
BfaI CTAG 2 cut(s) 140, 219
BpuEI CTTGAG 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 110, 152
Bse8I GATNNNNATC 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 274
BseMI GCAATG 2 cut(s) 110, 152
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 163
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 18, 163
Bsp143I GATC 1 cut(s) 29
BspANI GGCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 110, 152
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 229
BstAPI GCANNNNNTGC 2 cut(s) 107, 112
BstC8I GCNNGC 2 cut(s) 108, 159
BstHHI GCGC 2 cut(s) 50, 207
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 107, 112
BstNSI RCATGY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 108, 159
CfoI GCGC 2 cut(s) 50, 207
CseI GACGC 1 cut(s) 74
CviAII CATG 1 cut(s) 107
CviJI RGCY 2 cut(s) 16, 228
CviKI_1 RGCY 2 cut(s) 16, 228
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
DraI TTTAAA 2 cut(s) 189, 274
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 21, 108
FatI CATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 18
FspBI CTAG 2 cut(s) 140, 219
GlaI GCGC 2 cut(s) 49, 206
HaeIII GGCC 1 cut(s) 228
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 50, 207
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 2 cut(s) 48, 205
HinP1I GCGC 2 cut(s) 48, 205
HinfI GANTC 2 cut(s) 5, 250
Hpy99I CGWCG 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 112
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 2 cut(s) 48, 205
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 3 cut(s) 67, 141, 192
MaeI CTAG 2 cut(s) 140, 219
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 205, 208
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 18, 163
MluCI AATT 1 cut(s) 213
MnlI CCTC 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 2 cut(s) 188, 273
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 107, 112
NdeII GATC 1 cut(s) 29
NlaIII CATG 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PceI AGGCCT 1 cut(s) 228
PfeI GAWTC 2 cut(s) 5, 250
SaqAI TTAA 2 cut(s) 188, 273
Sau3AI GATC 1 cut(s) 29
SduI GDGCHC 2 cut(s) 18, 163
SetI ASST 2 cut(s) 181, 187
SmiI ATTTAAAT 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SphI GCATGC 1 cut(s) 110
Sse9I AATT 1 cut(s) 213
SseBI AGGCCT 1 cut(s) 228
SspMI CTAG 2 cut(s) 140, 219
StuI AGGCCT 1 cut(s) 228
StyI CCWWGG 1 cut(s) 229
SwaI ATTTAAAT 1 cut(s) 274
TasI AATT 1 cut(s) 213
TfiI GAWTC 2 cut(s) 5, 250
Tru1I TTAA 2 cut(s) 188, 273
Tru9I TTAA 2 cut(s) 188, 273
TspDTI ATGAA 1 cut(s) 242
XceI RCATGY 1 cut(s) 110
XspI CTAG 2 cut(s) 140, 219
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.