Rroxscaffold_7G00178990

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000446
Physical Location & Seq
Forward (+)
18587301 .. 18588884
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178990.1

Sequence Viewer

Length: 630 bp
ATGGCTGTTGGGTTGTTCACCGATGTGAATCGGAGAATTTCAGCAGCTGATTCGTACGTCAGACGTGGGCTTTGGTCTAGCAAGGGAGACTATCCTCTTGGTTCCAAGATAGGTGGAAAGCGAGTAGGTATTGTTGGATTGGGAAACATTGGCTATGAAGTTGCGAAAAGACTTGAGGCCTTTGGCTGCAAGATCTCATACAACTCAAGGAGCGAAAGGCCGTCTTTGTCATACCCCTTCTATTCCAATGTCTGTGAGCTTGCAGCTAATAGTGATGCCCTCATCATCTGTTGTGCATTGACAGACCAAACCCGCCACATGATCAACAAGGAAGTCTTATCTGCGTTGGGAAAAGATGGGGTGGTAGTTAATATAGGGCGTGGGGCAATTATTGATGAGAAAGAATTGGTCAAGTGTTTGGTGAATGGAGAGATCAGAGGTGCTGGTTTGGATGTGTTTGAGAATGAGCCTCGTATACCGAAAGAGCTTGTGGCAATGGACAATGTTGTTCTGTCTCCACATAAGGCTGCTCTTACCCTAGAGTCTTTCAAGAGAGGAAGTGAAGTAATGATCGCCAATTTGGAAGCTTTCTTCTCCAACAAACCCTTGGTTACTCCAGTCATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

209

Amino Acids

22.7

Weight (kDa)

8.24

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 4 - 176 7.1e-52 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 475
AciI CCGC 1 cut(s) 313
AcsI RAATTY 1 cut(s) 36
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 1 cut(s) 550
AjiI CACGTC 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 5 cut(s) 47, 259, 266, 487, 587
AluI AGCT 5 cut(s) 47, 259, 266, 487, 587
Alw26I GTCTC 2 cut(s) 81, 519
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 2 cut(s) 177, 218
ApeKI GCWGC 4 cut(s) 44, 186, 263, 527
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AsuHPI GGTGA 2 cut(s) 10, 433
BbvI GCAGC 4 cut(s) 56, 173, 275, 514
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 81, 519
BfaI CTAG 2 cut(s) 78, 539
BglII AGATCT 1 cut(s) 192
BisI GCNGC 4 cut(s) 45, 187, 264, 528
BlsI GCNGC 4 cut(s) 46, 188, 265, 529
BmgBI CACGTC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 600
BpuEI CTTGAG 2 cut(s) 190, 194
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 1 cut(s) 457
BseJI GATNNNNATC 1 cut(s) 27
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 617
BseXI GCAGC 4 cut(s) 56, 173, 275, 514
BshFI GGCC 2 cut(s) 179, 220
BsiWI CGTACG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 81, 519
BsnI GGCC 2 cut(s) 179, 220
Bsp143I GATC 4 cut(s) 192, 321, 432, 570
BspACI CCGC 1 cut(s) 313
BspANI GGCC 2 cut(s) 179, 220
BspLI GGNNCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 4 cut(s) 192, 321, 432, 570
BssNAI GTATAC 1 cut(s) 476
BssT1I CCWWGG 1 cut(s) 606
Bst1107I GTATAC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 261
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 4 cut(s) 195, 324, 435, 573
BstMAI GTCTC 2 cut(s) 81, 519
BstMBI GATC 4 cut(s) 192, 321, 432, 570
BstV1I GCAGC 4 cut(s) 56, 173, 275, 514
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 476
BsuRI GGCC 2 cut(s) 179, 220
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 47
Csp6I GTAC 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 2 cut(s) 319, 622
CviQI GTAC 1 cut(s) 55
DpnI GATC 4 cut(s) 194, 323, 434, 572
DpnII GATC 4 cut(s) 192, 321, 432, 570
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 2 cut(s) 322, 625
FaiI YATR 8 cut(s) 156, 199, 232, 320, 374, 476, 522, 623
FalI AAGNNNNNCTT 4 cut(s) 208, 240, 320, 352
FatI CATG 2 cut(s) 318, 621
FauI CCCGC 1 cut(s) 320
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 4 cut(s) 45, 187, 264, 528
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 4 cut(s) 45, 187, 264, 528
FspBI CTAG 2 cut(s) 78, 539
GluI GCNGC 4 cut(s) 45, 187, 264, 528
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 2 cut(s) 179, 220
Hin1II CATG 2 cut(s) 322, 625
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 3 cut(s) 28, 50, 542
HphI GGTGA 2 cut(s) 10, 433
Hpy166II GTNNAC 2 cut(s) 18, 476
Hpy188I TCNGA 3 cut(s) 33, 62, 437
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 2 cut(s) 18, 476
HpyAV CCTTC 1 cut(s) 247
HpyCH4IV ACGT 2 cut(s) 57, 64
HpyCH4V TGCA 3 cut(s) 189, 263, 296
HpySE526I ACGT 2 cut(s) 57, 64
Hsp92II CATG 2 cut(s) 322, 625
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 4 cut(s) 192, 321, 432, 570
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 1 cut(s) 429
Lsp1109I GCAGC 4 cut(s) 56, 173, 275, 514
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 78, 539
MaeII ACGT 2 cut(s) 57, 64
MaeIII GTNAC 1 cut(s) 610
MalI GATC 4 cut(s) 194, 323, 434, 572
MboI GATC 4 cut(s) 192, 321, 432, 570
MboII GAAGA 1 cut(s) 583
MflI RGATCY 1 cut(s) 192
MluCI AATT 4 cut(s) 36, 387, 404, 577
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 115, 621
MnlI CCTC 6 cut(s) 105, 169, 290, 431, 480, 548
MseI TTAA 2 cut(s) 369, 628
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 47
NdeII GATC 4 cut(s) 192, 321, 432, 570
NlaIII CATG 2 cut(s) 322, 625
NlaIV GGNNCC 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 179
PfeI GAWTC 2 cut(s) 28, 50
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 4 cut(s) 46, 188, 265, 529
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 369, 628
SatI GCNGC 4 cut(s) 45, 187, 264, 528
Sau3AI GATC 4 cut(s) 192, 321, 432, 570
SchI GAGTC 1 cut(s) 551
SfaNI GCATC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 173, 205
SmoI CTYRAG 2 cut(s) 173, 205
Sse9I AATT 4 cut(s) 36, 387, 404, 577
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 1 cut(s) 313
SspMI CTAG 2 cut(s) 78, 539
StuI AGGCCT 1 cut(s) 179
StyI CCWWGG 1 cut(s) 606
TaiI ACGT 2 cut(s) 60, 67
TasI AATT 4 cut(s) 36, 387, 404, 577
TfiI GAWTC 2 cut(s) 28, 50
Tru1I TTAA 2 cut(s) 369, 628
Tru9I TTAA 2 cut(s) 369, 628
TseI GCWGC 4 cut(s) 44, 186, 263, 527
TspDTI ATGAA 1 cut(s) 171
XapI RAATTY 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 2 cut(s) 78, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.