Rmu_sc0006343.1_g000010

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006343.1
OG0000446
Physical Location & Seq
Forward (+)
44351 .. 44836
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006343.1_g000010.1.cds

Sequence Viewer

Length: 486 bp
atggcagatgatgatcacagtgagctccctacagttcttgtacttcgccggtgcccattcattgctctcttggaacccaaatgctcccagaagttcaacttactaaaagcctgggactctcctctccctcaagaccagttcttgaccacccacgcccgctccgtccaggccctcctctcctctggcaatgggcctcccatcacctcccaaatcctccagtttctcccctccctcaaactcgtagtcaccaacagcaccggccttgaccacgttgacttagccgagtgtcgacgccgcggcattgcggtcgccaacgccgctaaagtgtttgctgaggacgttgctgacacggctgtggggctgttcattgatgtcatgagaaaggtttcggcttcgaatcggtatgttaggggtgggctgtgggcttgcagaggagactatcctcttggttctaaggttagcaattctagctactcatatatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

161

Amino Acids

17.59

Weight (kDa)

8.39

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 289
AccII CGCG 1 cut(s) 297
AciI CCGC 5 cut(s) 157, 295, 297, 305, 318
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 1 cut(s) 42
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 2 cut(s) 110, 165
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 2 cut(s) 25, 471
AluI AGCT 2 cut(s) 25, 471
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 429
AoxI GGCC 3 cut(s) 168, 191, 259
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
Asp700I GAANNNNTTC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 169, 191
AsuHPI GGTGA 2 cut(s) 193, 238
AsuII TTCGAA 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 333
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 366
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 2 cut(s) 112, 167
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 2 cut(s) 468, 484
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 3 cut(s) 295, 298, 318
BlsI GCNGC 3 cut(s) 296, 299, 319
Bme1390I CCNGG 2 cut(s) 112, 167
BmgT120I GGNCC 2 cut(s) 169, 191
BmiI GGNNCC 2 cut(s) 53, 75
BmrFI CCNGG 2 cut(s) 112, 167
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 111, 295
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bse118I RCCGGY 2 cut(s) 48, 257
Bse1I ACTGG 2 cut(s) 136, 217
Bse3DI GCAATG 3 cut(s) 60, 193, 300
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 2 cut(s) 112, 167
BseDI CCNNGG 2 cut(s) 111, 295
BseJI GATNNNNATC 1 cut(s) 12
BseMI GCAATG 3 cut(s) 60, 193, 300
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 136, 217
BseRI GAGGAG 4 cut(s) 111, 164, 169, 447
BseSI GKGCMC 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 3 cut(s) 170, 193, 261
BshNI GGYRCC 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 49, 258
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 3 cut(s) 170, 193, 261
Bsp119I TTCGAA 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 27, 56
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 5 cut(s) 157, 295, 297, 305, 318
BspANI GGCC 3 cut(s) 170, 193, 261
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 53, 75
BspT104I TTCGAA 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 51
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 3 cut(s) 60, 193, 300
BsrFI RCCGGY 2 cut(s) 48, 257
BsrI ACTGG 2 cut(s) 136, 217
BssAI RCCGGY 2 cut(s) 48, 257
BssECI CCNNGG 2 cut(s) 111, 295
BssMI GATC 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 112, 167
Bst4CI ACNGT 2 cut(s) 20, 34
BstACI GRCGYC 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 157, 427
BstDEI CTNAG 3 cut(s) 277, 333, 453
BstDSI CCRYGG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 13
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 3 cut(s) 317, 350, 468
BstNI CCWGG 2 cut(s) 112, 167
BstSCI CCNGG 2 cut(s) 110, 165
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 1 cut(s) 297
BsuRI GGCC 3 cut(s) 170, 193, 261
BtgI CCRYGG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 157, 427
CciI TCATGA 1 cut(s) 375
Cfr10I RCCGGY 2 cut(s) 48, 257
Cfr13I GGNCC 2 cut(s) 169, 191
Cfr42I CCGCGG 1 cut(s) 298
CseI GACGC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 376
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 3 cut(s) 277, 333, 453
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 110, 165
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 1 cut(s) 379
FaiI YATR 4 cut(s) 377, 405, 478, 480
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 375
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 13
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 295, 298, 318
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 295, 298, 318
FspBI CTAG 2 cut(s) 468, 484
GluI GCNGC 3 cut(s) 295, 298, 318
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 3 cut(s) 170, 193, 261
HapII CCGG 2 cut(s) 49, 258
HgaI GACGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 1 cut(s) 379
HincII GTYRAC 2 cut(s) 274, 290
HindII GTYRAC 2 cut(s) 274, 290
HinfI GANTC 2 cut(s) 116, 397
HpaII CCGG 2 cut(s) 49, 258
HphI GGTGA 2 cut(s) 193, 238
Hpy166II GTNNAC 2 cut(s) 274, 290
Hpy188III TCNNGA 3 cut(s) 131, 142, 376
Hpy8I GTNNAC 2 cut(s) 274, 290
Hpy99I CGWCG 1 cut(s) 294
HpyCH4III ACNGT 2 cut(s) 20, 34
HpyCH4IV ACGT 2 cut(s) 270, 339
HpyCH4V TGCA 1 cut(s) 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 350, 468
HpyF3I CTNAG 3 cut(s) 277, 333, 453
HpySE526I ACGT 2 cut(s) 270, 339
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 13
KspI CCGCGG 1 cut(s) 298
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 3 cut(s) 30, 89, 164
MaeI CTAG 2 cut(s) 468, 484
MaeII ACGT 2 cut(s) 270, 339
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 15
MbiI CCGCTC 1 cut(s) 159
MboI GATC 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 27, 56
MluCI AATT 1 cut(s) 463
MlyI GAGTC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 385
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 2 cut(s) 49, 258
MspR9I CCNGG 2 cut(s) 112, 167
MvaI CCWGG 2 cut(s) 112, 167
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 317, 350, 468
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 2 cut(s) 53, 75
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 353
PagI TCATGA 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 296, 299, 319
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 110, 165
PspGI CCWGG 2 cut(s) 110, 165
PspN4I GGNNCC 2 cut(s) 53, 75
PspPI GGNCC 2 cut(s) 169, 191
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 27
SacII CCGCGG 1 cut(s) 298
SalI GTCGAC 1 cut(s) 288
SatI GCNGC 3 cut(s) 295, 298, 318
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 2 cut(s) 169, 191
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 112, 167
SduI GDGCHC 2 cut(s) 27, 56
SetI ASST 7 cut(s) 27, 206, 273, 342, 387, 459, 473
SfcI CTRYAG 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 395
SgrAI CRCCGGYG 1 cut(s) 48
SgrBI CCGCGG 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 1 cut(s) 463
SsiI CCGC 5 cut(s) 157, 295, 297, 305, 318
SspMI CTAG 2 cut(s) 468, 484
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 110, 165
TaaI ACNGT 2 cut(s) 20, 34
TaiI ACGT 2 cut(s) 273, 342
TaqI TCGA 2 cut(s) 289, 395
TasI AATT 1 cut(s) 463
TatI WGTACW 1 cut(s) 40
TauI GCSGC 3 cut(s) 297, 300, 320
TfiI GAWTC 1 cut(s) 397
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 49, 355
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 2 cut(s) 468, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.