Rmu_sc0025960.1_g000001

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025960.1
OG0000446
Physical Location & Seq
Reverse (-)
863 .. 1330
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025960.1_g000001.1.cds

Sequence Viewer

Length: 468 bp
atgagattggaggcatttggctgcagtgtctcgtacaattcaaggagcgaaaagccgtctttgtcataccaattttattccaatgtgtgtgagcttgcagcagacagtgatgctctcatcatctgttgtggactgacagaggaaacccaccacatgatcaacaaggaagttttgtctgcgttgggaagagagggggtgatcattaatgtagggcgcggagctattatcgatgagaaggaaatggtcgagtgtttggtgcgaggagagatcggaggagctggcttggatgtgttcgagaatgagcctaatgttcctaaagagctcttttcattggataatgttgtactgtcaccgcatcaagctattgttacacatgaagcttttgtggatttgggtgaattagtaacagggaatttggaagcattcttctcaaacaaaccgttgctttctctggctgtgattaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

155

Amino Acids

16.84

Weight (kDa)

4.54

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 216
AciI CCGC 2 cut(s) 216, 353
AcsI RAATTY 1 cut(s) 412
AfaI GTAC 2 cut(s) 35, 345
AgsI TTSAA 1 cut(s) 42
AluBI AGCT 6 cut(s) 94, 221, 278, 322, 362, 380
AluI AGCT 6 cut(s) 94, 221, 278, 322, 362, 380
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 21, 98
ApoI RAATTY 1 cut(s) 412
AseI ATTAAT 2 cut(s) 204, 462
AspLEI GCGC 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 208, 342, 407
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 8, 110
BceAI ACGGC 1 cut(s) 40
BclI TGATCA 2 cut(s) 156, 198
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 22
BisI GCNGC 2 cut(s) 22, 99
BlsI GCNGC 2 cut(s) 23, 100
BmsI GCATC 2 cut(s) 100, 364
Bsa29I ATCGAT 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 228
BseGI GGATG 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 276, 288
BseXI GCAGC 2 cut(s) 8, 110
Bsh1236I CGCG 1 cut(s) 216
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 156, 198, 267
BspACI CCGC 2 cut(s) 216, 353
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 26
BssMI GATC 3 cut(s) 156, 198, 267
Bst4CI ACNGT 3 cut(s) 107, 348, 441
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 96, 280
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 3 cut(s) 159, 201, 270
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 156, 198, 267
BstSFI CTRYAG 1 cut(s) 22
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 8, 110
Bsu15I ATCGAT 1 cut(s) 228
BsuTUI ATCGAT 1 cut(s) 228
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 112
Cac8I GCNNGC 2 cut(s) 96, 280
CfoI GCGC 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 2 cut(s) 34, 344
CviAII CATG 2 cut(s) 154, 374
CviQI GTAC 2 cut(s) 34, 344
DpnI GATC 3 cut(s) 158, 200, 269
DpnII GATC 3 cut(s) 156, 198, 267
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 2 cut(s) 157, 377
FaiI YATR 3 cut(s) 67, 155, 375
FatI CATG 2 cut(s) 153, 373
FbaI TGATCA 2 cut(s) 156, 198
Fnu4HI GCNGC 2 cut(s) 22, 99
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 22, 99
GlaI GCGC 1 cut(s) 215
GluI GCNGC 2 cut(s) 22, 99
HhaI GCGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 157, 377
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 378
HphI GGTGA 3 cut(s) 208, 342, 407
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 3 cut(s) 107, 348, 441
HpyCH4V TGCA 2 cut(s) 24, 98
Hsp92II CATG 2 cut(s) 157, 377
HspAI GCGC 1 cut(s) 214
Ksp22I TGATCA 2 cut(s) 156, 198
Kzo9I GATC 3 cut(s) 156, 198, 267
LmnI GCTCC 3 cut(s) 45, 218, 275
LpnPI CCDG 3 cut(s) 264, 393, 437
Lsp1109I GCAGC 2 cut(s) 8, 110
LweI GCATC 2 cut(s) 100, 364
MaeIII GTNAC 3 cut(s) 348, 367, 403
MalI GATC 3 cut(s) 158, 200, 269
MboI GATC 3 cut(s) 156, 198, 267
MboII GAAGA 2 cut(s) 198, 418
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 5 cut(s) 37, 71, 398, 412, 463
MnlI CCTC 5 cut(s) 4, 133, 184, 254, 266
MseI TTAA 2 cut(s) 204, 462
Mva1269I GAATGC 1 cut(s) 422
MvnI CGCG 1 cut(s) 216
NdeII GATC 3 cut(s) 156, 198, 267
NlaIII CATG 2 cut(s) 157, 377
NmuCI GTSAC 1 cut(s) 348
PctI GAATGC 1 cut(s) 422
PkrI GCNGC 2 cut(s) 23, 100
PshBI ATTAAT 2 cut(s) 204, 462
Psp124BI GAGCTC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 26
RsaI GTAC 2 cut(s) 35, 345
RsaNI GTAC 2 cut(s) 34, 344
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 204, 462
SatI GCNGC 2 cut(s) 22, 99
Sau3AI GATC 3 cut(s) 156, 198, 267
SduI GDGCHC 1 cut(s) 324
SetI ASST 6 cut(s) 96, 223, 280, 324, 364, 382
SfaNI GCATC 2 cut(s) 100, 364
SfcI CTRYAG 1 cut(s) 22
Sse9I AATT 5 cut(s) 37, 71, 398, 412, 463
SsiI CCGC 2 cut(s) 216, 353
SstI GAGCTC 1 cut(s) 324
TaaI ACNGT 3 cut(s) 107, 348, 441
TaqI TCGA 3 cut(s) 228, 246, 294
TasI AATT 5 cut(s) 37, 71, 398, 412, 463
TatI WGTACW 1 cut(s) 343
Tru1I TTAA 2 cut(s) 204, 462
Tru9I TTAA 2 cut(s) 204, 462
TscAI CASTG 2 cut(s) 31, 112
TseFI GTSAC 1 cut(s) 348
TseI GCWGC 2 cut(s) 21, 98
Tsp45I GTSAC 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 318, 390
TspRI CASTG 2 cut(s) 31, 112
VspI ATTAAT 2 cut(s) 204, 462
XapI RAATTY 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.