Prupe.2G150500_v2.0.a1

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000446
Physical Location & Seq
Forward (+)
20546578 .. 20547546
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G150500.1

Sequence Viewer

Length: 450 bp
ATGGCCCAATTCCAATCCCAAGACCTCCCACAACTCCTGATTATTCACCCTCCAGCATTCTTCACTCATTTCCAATCTGAGTTATCCAAAAAGTTCCATATCCTCCATGCAGGGGAGTCACCACTCCCTCTAGACCAGTACTTGACCACCTATGCAGGTTCAGTCCAAGCCATGCTTTGCTACCATGCCACTCAGGTCAATGAGGACCTCCTCTGGCTGCTACCGGCACTGAAACTTGTTTTGACCTGCACTTCTGGTGTCAACCACATCGATGTTGTAGAGTGCAGGCGGCGTGGAATTGCCATAGCCACTGCCAGAAGTGTGTACTCAGAAGATGCTGATATTGGTGTTGGTTTGTTCCTTGATGTGCAGAGAAAAATTTCAGCAGTAGATCGGTATGTGAGGCAAGGGCTTTGGACTAGCAAAGGAAATTACCCTCTTGGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

150

Amino Acids

16.64

Weight (kDa)

6.57

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 146, 254
AciI CCGC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 2 cut(s) 140, 326
AfiI CCNNNNNNNGG 1 cut(s) 112
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 4, 205
AsuHPI GGTGA 2 cut(s) 38, 111
AvaII GGWCC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 204
BfaI CTAG 3 cut(s) 131, 420, 448
BfuAI ACCTGC 2 cut(s) 146, 254
BisI GCNGC 2 cut(s) 218, 290
BlsI GCNGC 2 cut(s) 219, 291
BmcAI AGTACT 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 4, 205
BmiI GGNNCC 1 cut(s) 445
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 3 cut(s) 69, 206, 342
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 204
BsgI GTGCAG 3 cut(s) 232, 304, 389
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 112
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 70, 205, 341
BspDI ATCGAT 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 445
BspMI ACCTGC 2 cut(s) 146, 254
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 3 cut(s) 78, 192, 328
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 227, 309
BveI ACCTGC 2 cut(s) 146, 254
Cac8I GCNNGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 4, 205
ClaI ATCGAT 1 cut(s) 270
Csp6I GTAC 2 cut(s) 139, 325
CviAII CATG 3 cut(s) 107, 172, 185
CviJI RGCY 5 cut(s) 5, 170, 217, 308, 412
CviKI_1 RGCY 5 cut(s) 5, 170, 217, 308, 412
CviQI GTAC 2 cut(s) 139, 325
DdeI CTNAG 3 cut(s) 78, 192, 328
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 205
FaeI CATG 3 cut(s) 110, 175, 188
FaiI YATR 7 cut(s) 99, 108, 153, 173, 186, 305, 399
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 3 cut(s) 106, 171, 184
Fnu4HI GCNGC 2 cut(s) 218, 290
Fsp4HI GCNGC 2 cut(s) 218, 290
FspBI CTAG 3 cut(s) 131, 420, 448
GluI GCNGC 2 cut(s) 218, 290
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 224
Hin1II CATG 3 cut(s) 110, 175, 188
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 224
HphI GGTGA 2 cut(s) 38, 111
Hpy166II GTNNAC 2 cut(s) 262, 325
Hpy188I TCNGA 2 cut(s) 79, 331
Hpy188III TCNNGA 2 cut(s) 37, 131
Hpy8I GTNNAC 2 cut(s) 262, 325
HpyCH4V TGCA 5 cut(s) 110, 155, 249, 285, 370
HpyF3I CTNAG 3 cut(s) 78, 192, 328
Hsp92II CATG 3 cut(s) 110, 175, 188
Kzo9I GATC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 1 cut(s) 325
MaeI CTAG 3 cut(s) 131, 420, 448
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 2 cut(s) 52, 344
MluCI AATT 4 cut(s) 8, 297, 378, 430
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 9 cut(s) 35, 60, 113, 138, 196, 218, 221, 396, 447
MroXI GAANNNNTTC 1 cut(s) 379
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 56
NdeII GATC 1 cut(s) 391
NlaIII CATG 3 cut(s) 110, 175, 188
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 117
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 219, 291
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 2 cut(s) 4, 205
PspPPI RGGWCCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 140, 326
RsaNI GTAC 2 cut(s) 139, 325
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 2 cut(s) 218, 290
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 2 cut(s) 4, 205
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 1 cut(s) 125
SetI ASST 6 cut(s) 27, 152, 160, 198, 210, 248
SfaNI GCATC 1 cut(s) 325
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 4 cut(s) 8, 297, 378, 430
SsiI CCGC 1 cut(s) 289
SspMI CTAG 3 cut(s) 131, 420, 448
TaqI TCGA 1 cut(s) 270
TasI AATT 4 cut(s) 8, 297, 378, 430
TatI WGTACW 2 cut(s) 138, 324
TauI GCSGC 1 cut(s) 292
TscAI CASTG 2 cut(s) 234, 316
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 2 cut(s) 234, 316
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 378
XbaI TCTAGA 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 3 cut(s) 131, 420, 448
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.