Prupe.2G151500_v2.0.a1

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000446
Physical Location & Seq
Reverse (-)
20634944 .. 20636714
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G151500.1

Sequence Viewer

Length: 618 bp
ATGCAAAATTTTTCACTAAACTTTATTAAAGGTCGGGGTATCATCAAGTTAGAATTTCTGAGGGAGACGAACCAAAGACAACCTGTGTTACTAATAGGAGGCAAACGAGTTGGGATTGTTGGATTGGGAAACATTGGCTTAGAAGTTGCTAAGAGACTCGAGGCCTTTGGTTGCAATATCTTGTATAACTCAAGGAAGAAAAAACCATTTGTTTCGTACCCTTTCTTTCCTGATGTATGTGAACTTTCAGCTGATAGCGATGTGCTTGTCATTTGTTGTGGTTTGAATGCTCAAACCCACCACATGATTAACAAGAAAGTCTTGTTGGCATTGGGAAGAGAGGGGGTGATTGTGAATGTAGGACGTGGGGCTATAATCGACGAGAAGGAAATGGTGCAGTGTTTGGTGCGAGGCGAGATTGGAGGTGCTGTTTTGGATGTGTTTGAGAATGAGCCTCATGTTCCTAAAGAGCTCTTTGCATTGGATAATGTCGTACTGTCACCACATCATGCTGGCCTTACACCAGAATGTTTCACGGCTTTGCGCGAACTAGTAGTAGGGAATTTGGAAGCATTCTTCTCAAACAAACCATTGCTTTCTCAAGTGGAGAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

206

Amino Acids

22.58

Weight (kDa)

6.95

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 546
AcsI RAATTY 3 cut(s) 7, 53, 562
AfaI GTAC 2 cut(s) 218, 495
AgsI TTSAA 1 cut(s) 286
AhlI ACTAGT 1 cut(s) 550
AjiI CACGTC 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 2 cut(s) 251, 472
AluI AGCT 2 cut(s) 251, 472
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 59, 148
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 2 cut(s) 162, 514
ApoI RAATTY 3 cut(s) 7, 53, 562
AspLEI GCGC 1 cut(s) 546
AsuHPI GGTGA 2 cut(s) 358, 492
AvaI CYCGRG 1 cut(s) 158
BanII GRGCYC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 474
BceAI ACGGC 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 59, 148
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 1 cut(s) 551
BmeT110I CYCGRG 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 365
BpuEI CTTGAG 2 cut(s) 175, 585
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bse3DI GCAATG 1 cut(s) 590
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 590
BseMII CTCAG 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 2 cut(s) 164, 516
BsiHKAI GWGCWC 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 59, 148
BsmBI CGTCTC 1 cut(s) 59
BsmI GAATGC 2 cut(s) 292, 572
BsnI GGCC 2 cut(s) 164, 516
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 474
BspANI GGCC 2 cut(s) 164, 516
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 546
BsrDI GCAATG 1 cut(s) 590
Bst4CI ACNGT 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 3 cut(s) 59, 139, 150
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 1 cut(s) 546
BstHHI GCGC 1 cut(s) 546
BstMAI GTCTC 2 cut(s) 59, 148
BstUI CGCG 1 cut(s) 546
BsuRI GGCC 2 cut(s) 164, 516
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 217, 494
CviAII CATG 3 cut(s) 304, 458, 509
CviJI RGCY 8 cut(s) 138, 164, 251, 371, 454, 472, 516, 539
CviKI_1 RGCY 8 cut(s) 138, 164, 251, 371, 454, 472, 516, 539
CviQI GTAC 2 cut(s) 217, 494
DdeI CTNAG 3 cut(s) 59, 139, 150
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 3 cut(s) 307, 461, 512
FaiI YATR 6 cut(s) 186, 238, 305, 374, 459, 510
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 3 cut(s) 303, 457, 508
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 1 cut(s) 474
FspBI CTAG 1 cut(s) 551
GlaI GCGC 1 cut(s) 545
HaeIII GGCC 2 cut(s) 164, 516
HhaI GCGC 1 cut(s) 546
Hin1II CATG 3 cut(s) 307, 461, 512
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HinfI GANTC 1 cut(s) 156
HphI GGTGA 2 cut(s) 358, 492
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 498
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 4 cut(s) 4, 174, 397, 479
HpyF3I CTNAG 3 cut(s) 59, 139, 150
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 3 cut(s) 307, 461, 512
HspAI GCGC 1 cut(s) 544
LpnPI CCDG 4 cut(s) 96, 243, 498, 537
MaeI CTAG 1 cut(s) 551
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 87, 498
MboII GAAGA 3 cut(s) 208, 348, 568
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 4 cut(s) 7, 53, 562, 613
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 7 cut(s) 54, 92, 154, 334, 404, 416, 465
MseI TTAA 2 cut(s) 27, 309
MslI CAYNNNNRTG 1 cut(s) 526
MspA1I CMGCKG 1 cut(s) 251
Mva1269I GAATGC 2 cut(s) 292, 572
MvnI CGCG 1 cut(s) 546
NlaIII CATG 3 cut(s) 307, 461, 512
NmuCI GTSAC 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 158
PceI AGGCCT 1 cut(s) 164
PctI GAATGC 2 cut(s) 292, 572
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 474
PspXI VCTCGAGB 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 218, 495
RsaNI GTAC 2 cut(s) 217, 494
RseI CAYNNNNRTG 1 cut(s) 526
SacI GAGCTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 27, 309
SchI GAGTC 1 cut(s) 150
SduI GDGCHC 1 cut(s) 474
SetI ASST 6 cut(s) 34, 85, 253, 367, 427, 474
Sfr274I CTCGAG 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 526
SmlI CTYRAG 3 cut(s) 158, 190, 600
SmoI CTYRAG 3 cut(s) 158, 190, 600
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 4 cut(s) 7, 53, 562, 613
SseBI AGGCCT 1 cut(s) 164
SspMI CTAG 1 cut(s) 551
SstI GAGCTC 1 cut(s) 474
StuI AGGCCT 1 cut(s) 164
TaaI ACNGT 1 cut(s) 498
TaiI ACGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 159, 378
TasI AATT 4 cut(s) 7, 53, 562, 613
Tru1I TTAA 2 cut(s) 27, 309
Tru9I TTAA 2 cut(s) 27, 309
TscAI CASTG 1 cut(s) 404
TseFI GTSAC 1 cut(s) 498
Tsp45I GTSAC 1 cut(s) 498
TspRI CASTG 1 cut(s) 404
XapI RAATTY 3 cut(s) 7, 53, 562
XhoI CTCGAG 1 cut(s) 158
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.