Rorug06G0276100

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000446
Physical Location & Seq
Forward (+)
42322367 .. 42323785
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0276100.1

Sequence Viewer

Length: 216 bp
ATGTCCCGCGGTAACCAGAGAGACCGAGATCGTGAAAGGGCTCAGGCCAGGTCCGGCAACAAGACCAAGCAGGCCAAAACCGATGGATTGACCCCTGAACAACGCCGAGAAAGGGACGCCAAGGCGCTGCAGGAAAAGGCGGCAAAGAAGGCGGCGCAGGCGCAGGCGGCCGGAGGGAACAAAGCGGGAGGAATCAATGCTGGCGGCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

71

Amino Acids

7.59

Weight (kDa)

11.03

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERF-like_N PF04419 1 - 36 2.4e-09 Small EDRK-rich factor 1/2-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AciI CCGC 7 cut(s) 7, 9, 140, 152, 167, 185, 204
AcoI YGGCCR 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 112
AjnI CCWGG 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 15
AoxI GGCC 3 cut(s) 45, 72, 168
ApeKI GCWGC 1 cut(s) 127
AspLEI GCGC 3 cut(s) 127, 157, 163
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 5 cut(s) 128, 141, 153, 168, 205
BlsI GCNGC 5 cut(s) 129, 142, 154, 169, 206
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 7, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 7, 120
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 3 cut(s) 47, 74, 170
BsiEI CGRYCG 1 cut(s) 171
BsiSI CCGG 2 cut(s) 54, 171
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 3 cut(s) 47, 74, 170
Bso31I GGTCTC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 7 cut(s) 7, 9, 140, 152, 167, 185, 204
BspANI GGCC 3 cut(s) 47, 74, 170
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 7, 120
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 4 cut(s) 72, 159, 165, 202
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 7
BstEII GGTNACC 1 cut(s) 11
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 3 cut(s) 127, 157, 163
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 28
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 3 cut(s) 149, 158, 167
BstNI CCWGG 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 114
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 3 cut(s) 47, 74, 170
BtgI CCRYGG 1 cut(s) 7
Cac8I GCNNGC 4 cut(s) 72, 159, 165, 202
CfoI GCGC 3 cut(s) 127, 157, 163
Cfr13I GGNCC 1 cut(s) 51
Cfr42I CCGCGG 1 cut(s) 10
CseI GACGC 1 cut(s) 125
CviJI RGCY 4 cut(s) 41, 47, 74, 170
CviKI_1 RGCY 4 cut(s) 41, 47, 74, 170
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 168
EagI CGGCCG 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 120
FaqI GGGAC 1 cut(s) 128
FauI CCCGC 2 cut(s) 14, 178
Fnu4HI GCNGC 5 cut(s) 128, 141, 153, 168, 205
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 5 cut(s) 128, 141, 153, 168, 205
GlaI GCGC 3 cut(s) 126, 156, 162
GluI GCNGC 5 cut(s) 128, 141, 153, 168, 205
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 3 cut(s) 47, 74, 170
HapII CCGG 2 cut(s) 54, 171
HgaI GACGC 1 cut(s) 125
HhaI GCGC 3 cut(s) 127, 157, 163
Hin1I GRCGYC 1 cut(s) 117
Hin6I GCGC 3 cut(s) 125, 155, 161
HinP1I GCGC 3 cut(s) 125, 155, 161
HinfI GANTC 1 cut(s) 192
HpaII CCGG 2 cut(s) 54, 171
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 158, 167
HpyF3I CTNAG 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 117
HspAI GCGC 3 cut(s) 125, 155, 161
KspI CCGCGG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 28
Lsp1109I GCAGC 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 43
MnlI CCTC 2 cut(s) 167, 182
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 2 cut(s) 54, 171
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 3 cut(s) 149, 158, 167
NdeII GATC 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 131
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 5 cut(s) 129, 142, 154, 169, 206
Psp6I CCWGG 1 cut(s) 47
PspEI GGTNACC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 47
PspPI GGNCC 1 cut(s) 51
PstI CTGCAG 1 cut(s) 132
SacII CCGCGG 1 cut(s) 10
SatI GCNGC 5 cut(s) 128, 141, 153, 168, 205
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 1 cut(s) 43
SetI ASST 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 10
SgrBI CCGCGG 1 cut(s) 10
SinI GGWCC 1 cut(s) 51
SsiI CCGC 7 cut(s) 7, 9, 140, 152, 167, 185, 204
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 120
TaqII GACCGA 1 cut(s) 39
TauI GCSGC 4 cut(s) 143, 155, 170, 207
TfiI GAWTC 1 cut(s) 192
TseI GCWGC 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.