pycom02g16040

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000446
Physical Location & Seq
Forward (+)
13096818 .. 13097576
759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16040.2

Sequence Viewer

Length: 465 bp
ATGCTCCGGTTTGTCAACATTGGAGGGAAGCGAGTTGGTATCGTTGGATTGGGACACATGGGCTTAGAAGTTGCTAAAAGACTTGAGGCATTTGATTGCATTATCTTGTACAACCCAAGGAAGGAAAAACCATCTGTTTCGTACCCTTTCTATTCCGATGTTTGTGAACTTGCAGCTAATAGCGACGTGCTTGTTGTTCGCTGCACATTGACTGCTCAAACCCACCACATGATTAACAAGAAAGTCTCGTTGGCATTGGGAAGAGAGGGGGTGACTGTTAATGTAGGGCGTGGAGCTATTGTCGATGAGAACGAAATGGTGCAGTGTTTGGTGCAAGGAGAGATCAAGGGTGCTGGCTTGGATGGATTGGATGTGTTTGAGAATGAGTCTGAAGTTCCGAAGGAGCTCTTTGGACTTGATAATGTTGTCCTGTCACCGCATCAAGCTGCTACGACAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

155

Amino Acids

16.75

Weight (kDa)

5.8

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 110, 143
AfiI CCNNNNNNNGG 1 cut(s) 121
AjiI CACGTC 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 176, 296, 406, 446
AluI AGCT 4 cut(s) 176, 296, 406, 446
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 173, 201, 446
AsuHPI GGTGA 2 cut(s) 283, 426
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 185, 188, 433
BccI CCATC 2 cut(s) 139, 356
BcoDI GTCTC 1 cut(s) 250
BisI GCNGC 3 cut(s) 174, 202, 447
BlsI GCNGC 3 cut(s) 175, 203, 448
BmgBI CACGTC 1 cut(s) 187
BmsI GCATC 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 2 cut(s) 367, 376
BseLI CCNNNNNNNGG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 185, 188, 433
BsgI GTGCAG 2 cut(s) 187, 341
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 408
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 256
BstAUI TGTACA 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 367, 376
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 185, 188, 433
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 367, 376
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 109, 142
CviAII CATG 2 cut(s) 58, 229
CviJI RGCY 6 cut(s) 63, 176, 296, 357, 406, 446
CviKI_1 RGCY 6 cut(s) 63, 176, 296, 357, 406, 446
CviQI GTAC 2 cut(s) 109, 142
DdeI CTNAG 1 cut(s) 64
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 61, 232
FaiI YATR 2 cut(s) 59, 230
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 57, 228
Fnu4HI GCNGC 3 cut(s) 174, 202, 447
FokI GGATG 2 cut(s) 374, 383
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 3 cut(s) 174, 202, 447
GluI GCNGC 3 cut(s) 174, 202, 447
HapII CCGG 1 cut(s) 7
Hin1II CATG 2 cut(s) 61, 232
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 386
HpaII CCGG 1 cut(s) 7
HphI GGTGA 2 cut(s) 283, 426
Hpy166II GTNNAC 2 cut(s) 16, 167
Hpy188I TCNGA 3 cut(s) 157, 391, 399
Hpy8I GTNNAC 2 cut(s) 16, 167
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 115, 394
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 99, 173, 204, 322, 334
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 61, 232
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 3 cut(s) 9, 293, 403
LpnPI CCDG 3 cut(s) 20, 339, 443
Lsp1109I GCAGC 3 cut(s) 185, 188, 433
LweI GCATC 1 cut(s) 448
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 271, 432
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 408
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 3 cut(s) 17, 79, 259
MseI TTAA 2 cut(s) 234, 279
MspI CCGG 1 cut(s) 7
NdeII GATC 1 cut(s) 342
NlaIII CATG 2 cut(s) 61, 232
NmuCI GTSAC 2 cut(s) 271, 432
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PkrI GCNGC 3 cut(s) 175, 203, 448
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 408
RsaI GTAC 2 cut(s) 110, 143
RsaNI GTAC 2 cut(s) 109, 142
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 234, 279
SatI GCNGC 3 cut(s) 174, 202, 447
Sau3AI GATC 1 cut(s) 342
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 408
SetI ASST 5 cut(s) 178, 189, 298, 408, 448
SfaNI GCATC 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SsiI CCGC 1 cut(s) 437
SstI GAGCTC 1 cut(s) 408
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 303
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 2 cut(s) 234, 279
Tru9I TTAA 2 cut(s) 234, 279
TscAI CASTG 1 cut(s) 329
TseFI GTSAC 2 cut(s) 271, 432
TseI GCWGC 3 cut(s) 173, 201, 446
Tsp45I GTSAC 2 cut(s) 271, 432
TspRI CASTG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.