Rmu_sc0001144.1_g000039

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001144.1
OG0000446
Physical Location & Seq
Reverse (-)
132218 .. 133345
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001144.1_g000039.1.cds

Sequence Viewer

Length: 987 bp
atggcggatgataatcaaagtgagctccctacggctacagttttgatacttcgccaatccggattcattggtctcatggaacccaaactctcccaaaaattcaacttactgaaagcctgggactctcctctccctcaagaccagttcttgaccacccacgcccgctccgtccaggccctcatctcctccgccaatgggccgcccattaccgcccaaatcctccacttgctcccctccctcaaagtcatagccaccaccagcgccggcattgaccacgttgacttggccgagtgtcgacgccgcggcgttgccgtcgccaacgccggtaaagcctttgctgaggacgctgctgactcggctgtggggctgttcattgatgtcatgagaaagatttcggcttcgaatcagtatgttagggatgggctctggtctaccagaggagactatcctcttggttctaagattggaggaaagaaggtcggtattgttggattgggcaacattgggttcgaagttgcaaaaagattggaggcatttggctgcagtgtgtcgtacaattcgaggagcgaaaggccgtatctgtcataccagttctattccaatgtgtgtgagcttgcagcagacagtgatgctctcatcatctgttgcgcattgacagagcaaacccaccacatgatcaacaaggaagttttgtctgcgttgggaagagagggggtggttgttaatgtagggcgtggagccattatcgatgagaaagaaatggtgcagtgtttggtgcgaggagagataaggggtgctggcctggatgtgtttgagaatgagcctcatgttcctaaagagctctttgcattggataatgttgtactgtcaccgcatcaagctgttcttacacatgaagctttcatgggtttgggtgaattagtaacagggaatttggaagcattcttctcaaacaaaccgttactttctccggctgtgattgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

328

Amino Acids

35.35

Weight (kDa)

5.54

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 649
AccBSI CCGCTC 1 cut(s) 165
AccI GTMKAC 2 cut(s) 295, 431
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 8 cut(s) 5, 163, 189, 200, 210, 301, 303, 872
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 2 cut(s) 98, 931
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 2 cut(s) 554, 864
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 3 cut(s) 116, 171, 801
AluBI AGCT 5 cut(s) 25, 613, 841, 881, 899
AluI AGCT 5 cut(s) 25, 613, 841, 881, 899
Alw21I GWGCWC 2 cut(s) 27, 843
Alw26I GTCTC 2 cut(s) 77, 435
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 5 cut(s) 174, 197, 285, 572, 799
ApeKI GCWGC 3 cut(s) 347, 540, 617
ApoI RAATTY 2 cut(s) 98, 931
Asp700I GAANNNNTTC 1 cut(s) 391
AspLEI GCGC 2 cut(s) 263, 650
AspS9I GGNCC 2 cut(s) 175, 197
AsuHPI GGTGA 2 cut(s) 861, 926
AsuII TTCGAA 2 cut(s) 401, 510
BanII GRGCYC 3 cut(s) 27, 426, 843
Bbv12I GWGCWC 2 cut(s) 27, 843
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 334, 527, 629
BccI CCATC 1 cut(s) 413
BceAI ACGGC 3 cut(s) 48, 296, 559
BciT130I CCWGG 3 cut(s) 118, 173, 803
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 77, 435
BfmI CTRYAG 2 cut(s) 36, 541
BfoI RGCGCY 1 cut(s) 264
BisI GCNGC 6 cut(s) 200, 301, 304, 348, 541, 618
BlsI GCNGC 6 cut(s) 201, 302, 305, 349, 542, 619
Bme1390I CCNGG 3 cut(s) 118, 173, 803
BmgT120I GGNCC 2 cut(s) 175, 197
BmiI GGNNCC 2 cut(s) 81, 739
BmrFI CCNGG 3 cut(s) 118, 173, 803
BmsI GCATC 2 cut(s) 619, 883
Bpu10I CCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 2 cut(s) 401, 510
BpuEI CTTGAG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 747
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 117, 301
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 2 cut(s) 263, 323
Bse1I ACTGG 2 cut(s) 142, 589
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 3 cut(s) 118, 173, 803
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 117, 301
BseGI GGATG 3 cut(s) 13, 424, 811
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 142, 589
BseRI GAGGAG 5 cut(s) 117, 175, 453, 577, 795
BseXI GCAGC 3 cut(s) 334, 527, 629
BsgI GTGCAG 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 176, 199, 287, 574, 801
BshVI ATCGAT 1 cut(s) 747
BsiHKAI GWGCWC 2 cut(s) 27, 843
BsiSI CCGG 4 cut(s) 60, 264, 324, 971
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 77, 435
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 941
BsnI GGCC 5 cut(s) 176, 199, 287, 574, 801
Bso31I GGTCTC 1 cut(s) 77
Bsp119I TTCGAA 2 cut(s) 401, 510
Bsp1286I GDGCHC 3 cut(s) 27, 426, 843
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 1 cut(s) 675
BspACI CCGC 8 cut(s) 5, 163, 189, 200, 210, 301, 303, 872
BspANI GGCC 5 cut(s) 176, 199, 287, 574, 801
BspCNI CTCAG 1 cut(s) 331
BspDI ATCGAT 1 cut(s) 747
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 81, 739
BspMAI CTGCAG 1 cut(s) 545
BspT104I TTCGAA 2 cut(s) 401, 510
BspTNI GGTCTC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 165
BsrFI RCCGGY 2 cut(s) 263, 323
BsrI ACTGG 2 cut(s) 142, 589
BssAI RCCGGY 2 cut(s) 263, 323
BssECI CCNNGG 2 cut(s) 117, 301
BssMI GATC 1 cut(s) 675
BssNI GRCGYC 1 cut(s) 298
Bst2UI CCWGG 3 cut(s) 118, 173, 803
Bst4CI ACNGT 4 cut(s) 40, 626, 867, 960
Bst6I CTCTTC 1 cut(s) 700
BstACI GRCGYC 1 cut(s) 298
BstBI TTCGAA 2 cut(s) 401, 510
BstC8I GCNNGC 4 cut(s) 163, 265, 615, 799
BstDEI CTNAG 2 cut(s) 339, 459
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 13, 424, 811
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 2 cut(s) 263, 650
BstKTI GATC 1 cut(s) 678
BstMAI GTCTC 2 cut(s) 77, 435
BstMBI GATC 1 cut(s) 675
BstMWI GCNNNNNNNGC 3 cut(s) 329, 344, 356
BstNI CCWGG 3 cut(s) 118, 173, 803
BstSCI CCNGG 3 cut(s) 116, 171, 801
BstSFI CTRYAG 2 cut(s) 36, 541
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 334, 527, 629
Bsu15I ATCGAT 1 cut(s) 747
BsuRI GGCC 5 cut(s) 176, 199, 287, 574, 801
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 13, 424, 811
BtsI GCAGTG 2 cut(s) 550, 773
BtsIMutI CAGTG 3 cut(s) 550, 631, 773
Cac8I GCNNGC 4 cut(s) 163, 265, 615, 799
CciI TCATGA 1 cut(s) 381
CfoI GCGC 2 cut(s) 263, 650
Cfr10I RCCGGY 2 cut(s) 263, 323
Cfr13I GGNCC 2 cut(s) 175, 197
Cfr42I CCGCGG 1 cut(s) 304
ClaI ATCGAT 1 cut(s) 747
CseI GACGC 2 cut(s) 306, 353
Csp6I GTAC 2 cut(s) 553, 863
CviAII CATG 6 cut(s) 76, 382, 673, 827, 893, 904
CviQI GTAC 2 cut(s) 553, 863
DdeI CTNAG 2 cut(s) 339, 459
DpnI GATC 1 cut(s) 677
DpnII GATC 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 700
EarI CTCTTC 1 cut(s) 700
EciI GGCGGA 2 cut(s) 20, 178
Ecl136II GAGCTC 2 cut(s) 25, 841
Eco24I GRGCYC 3 cut(s) 27, 426, 843
Eco31I GGTCTC 1 cut(s) 77
Eco53kI GAGCTC 2 cut(s) 25, 841
EcoICRI GAGCTC 2 cut(s) 25, 841
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 116, 171, 801
EcoT38I GRGCYC 3 cut(s) 27, 426, 843
FaeI CATG 6 cut(s) 79, 385, 676, 830, 896, 907
FaiI YATR 9 cut(s) 77, 248, 383, 411, 586, 674, 828, 894, 905
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 1 cut(s) 134
FatI CATG 6 cut(s) 75, 381, 672, 826, 892, 903
FauI CCCGC 1 cut(s) 170
FbaI TGATCA 1 cut(s) 675
FblI GTMKAC 2 cut(s) 295, 431
Fnu4HI GCNGC 6 cut(s) 200, 301, 304, 348, 541, 618
FokI GGATG 3 cut(s) 20, 431, 818
FriOI GRGCYC 3 cut(s) 27, 426, 843
Fsp4HI GCNGC 6 cut(s) 200, 301, 304, 348, 541, 618
FspI TGCGCA 1 cut(s) 649
GlaI GCGC 2 cut(s) 262, 649
GluI GCNGC 6 cut(s) 200, 301, 304, 348, 541, 618
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 5 cut(s) 176, 199, 287, 574, 801
HapII CCGG 4 cut(s) 60, 264, 324, 971
HgaI GACGC 2 cut(s) 306, 353
HhaI GCGC 2 cut(s) 263, 650
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 6 cut(s) 79, 385, 676, 830, 896, 907
Hin6I GCGC 2 cut(s) 261, 648
HinP1I GCGC 2 cut(s) 261, 648
HincII GTYRAC 2 cut(s) 280, 296
HindII GTYRAC 2 cut(s) 280, 296
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 4 cut(s) 63, 122, 353, 403
HpaII CCGG 4 cut(s) 60, 264, 324, 971
HphI GGTGA 2 cut(s) 861, 926
Hpy166II GTNNAC 3 cut(s) 280, 296, 432
Hpy188III TCNNGA 4 cut(s) 60, 137, 148, 382
Hpy8I GTNNAC 3 cut(s) 280, 296, 432
Hpy99I CGWCG 2 cut(s) 300, 317
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 4 cut(s) 40, 626, 867, 960
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 5 cut(s) 518, 543, 617, 766, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 344, 356
HpyF3I CTNAG 2 cut(s) 339, 459
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 6 cut(s) 79, 385, 676, 830, 896, 907
HspAI GCGC 2 cut(s) 261, 648
Kpn2I TCCGGA 1 cut(s) 59
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 675
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 1 cut(s) 675
LmnI GCTCC 5 cut(s) 30, 170, 234, 564, 737
Lsp1109I GCAGC 3 cut(s) 334, 527, 629
LweI GCATC 2 cut(s) 619, 883
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 867, 922, 960
MalI GATC 1 cut(s) 677
MbiI CCGCTC 1 cut(s) 165
MboI GATC 1 cut(s) 675
MboII GAAGA 2 cut(s) 717, 937
MhlI GDGCHC 3 cut(s) 27, 426, 843
MluCI AATT 4 cut(s) 98, 556, 917, 931
MlyI GAGTC 2 cut(s) 116, 347
MmeI TCCRAC 1 cut(s) 469
MroI TCCGGA 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 1 cut(s) 723
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 4 cut(s) 60, 264, 324, 971
MspR9I CCNGG 3 cut(s) 118, 173, 803
Mva1269I GAATGC 1 cut(s) 941
MvaI CCWGG 3 cut(s) 118, 173, 803
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 329, 344, 356
NaeI GCCGGC 1 cut(s) 265
NdeII GATC 1 cut(s) 675
NgoMIV GCCGGC 1 cut(s) 263
NlaIII CATG 6 cut(s) 79, 385, 676, 830, 896, 907
NlaIV GGNNCC 2 cut(s) 81, 739
NmeAIII GCCGAG 2 cut(s) 313, 335
NmuCI GTSAC 1 cut(s) 867
NsbI TGCGCA 1 cut(s) 649
NspV TTCGAA 2 cut(s) 401, 510
PagI TCATGA 1 cut(s) 381
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 557
PctI GAATGC 1 cut(s) 941
PdiI GCCGGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 63, 403
PkrI GCNGC 6 cut(s) 201, 302, 305, 349, 542, 619
PleI GAGTC 2 cut(s) 116, 347
PpsI GAGTC 2 cut(s) 116, 347
Psp124BI GAGCTC 2 cut(s) 27, 843
Psp6I CCWGG 3 cut(s) 116, 171, 801
PspGI CCWGG 3 cut(s) 116, 171, 801
PspN4I GGNNCC 2 cut(s) 81, 739
PspPI GGNCC 2 cut(s) 175, 197
PstI CTGCAG 1 cut(s) 545
RsaI GTAC 2 cut(s) 554, 864
RsaNI GTAC 2 cut(s) 553, 863
SacI GAGCTC 2 cut(s) 27, 843
SacII CCGCGG 1 cut(s) 304
SalI GTCGAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 6 cut(s) 200, 301, 304, 348, 541, 618
Sau3AI GATC 1 cut(s) 675
Sau96I GGNCC 2 cut(s) 175, 197
SchI GAGTC 2 cut(s) 116, 347
ScrFI CCNGG 3 cut(s) 118, 173, 803
SduI GDGCHC 3 cut(s) 27, 426, 843
SetI ASST 7 cut(s) 27, 279, 480, 615, 843, 883, 901
SfaNI GCATC 2 cut(s) 619, 883
SfcI CTRYAG 2 cut(s) 36, 541
Sfr303I CCGCGG 1 cut(s) 304
SfuI TTCGAA 2 cut(s) 401, 510
SgrBI CCGCGG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 4 cut(s) 98, 556, 917, 931
SsiI CCGC 8 cut(s) 5, 163, 189, 200, 210, 301, 303, 872
SstI GAGCTC 2 cut(s) 27, 843
StyD4I CCNGG 3 cut(s) 116, 171, 801
TaaI ACNGT 4 cut(s) 40, 626, 867, 960
TaiI ACGT 1 cut(s) 279
TaqI TCGA 5 cut(s) 295, 401, 510, 560, 747
TasI AATT 4 cut(s) 98, 556, 917, 931
TatI WGTACW 1 cut(s) 862
TauI GCSGC 3 cut(s) 202, 303, 306
TfiI GAWTC 2 cut(s) 63, 403
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TscAI CASTG 3 cut(s) 550, 631, 773
TseFI GTSAC 1 cut(s) 867
TseI GCWGC 3 cut(s) 347, 540, 617
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 4 cut(s) 55, 361, 892, 909
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 3 cut(s) 550, 631, 773
XapI RAATTY 2 cut(s) 98, 931
XmiI GTMKAC 2 cut(s) 295, 431
XmnI GAANNNNTTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.