Prupe.2G151800_v2.0.a1

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000446
Physical Location & Seq
Reverse (-)
20668029 .. 20669552
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G151800.1

Sequence Viewer

Length: 996 bp
ATGGCACACAATAACCACACCCATCTCCATGGCCAAGACCTCCCAAAAGTTCTGCAACTTCTCCCAAACCCCTGCTTCGCTCTCGTGGAGGCCAACAACTCCCACAAGTTCCACTTCCTCAAAGCCTGGGCCTCTCCTCTCCCTCAAGACCAGTTCTTGGAAACGCACGCAGGCTCAGTGCAGGTCCTTCTGTCCTCCGCCATTGGACCGCCCATCACTGCCCAGATCCTCCATTTGCTGCCCTCCTTGAAGCTCCTCGTCACCATCAGCGCAGGCCTCGACCATGTCGACTTGGCCGAGTGTCGAGCGCGCGGCGTGGCCATTGCCAGCGCCTCTAAGATCTTCGCTGAGGACGTTGCTGACGTGGCCGTAGGGCTGCTTCTCGATGTCATGAGAAATATTTCGGCTTCCGATCGGTTTGTCAGAGACGGGTTTTGGGTTAGCAAGTGTGATTTTGCTCTGGGTTCTAAGATAGGAGGCAAACGAGTTGGGATTGTTGGATTGGGGAACATTGGCTTAGAAGTTGCTAAGAGACTTGAGGCCTTTGGTTGCAATATCTTGTATAACTCAAGGAAGAAAAAACCATTTGTTTCGTACCATTTCTTTCCTGATGTATGTGAACTTGCAGCTAATAGCGATGTGCTTGTCATTTGTTGTGGTTTGAATGCTCAAACCCACCACATGATTAACAAGAAAGTCTTGTTGGCATTGGGAAGAGAGGGGGTGATTGTGAATGTAGGACGTGGGGCTATAATTGACGAGAAGGAAATGGTGCAGTGTTTGGTGCGAGGAGAGATTGGAGGTGCTGGTTTGGATGTGTTTGAGAATGAGCCTCATGTTCCTAAAGAGCTATTTGCATTGGATAATGTCGTACTGTCACCACATCAAGCTGCCCTTACACCAGAATGTTTCACGGCTTTGCGCGAACTGGTAATAGGGAATTTGGAAGCATTCTTCTCAAACAAACCATTGCTTTCTCAAGTGGAGAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

332

Amino Acids

35.85

Weight (kDa)

6.39

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12550 AT2G45630 AT2G45630
fragaria_vesca FvH4_7g12570 FvH4_7g12570 FvH4_7g12580 FvH4_7g12581 FvH4_7g12581 FvH4_7g12590 FvH4_7g12590
malus_domestica MD07G1124400.v1.1 MD07G1124500.v1.1
prunus_persica Prupe.2G149900_v2.0.a1 Prupe.2G149900_v2.0.a1 Prupe.2G150000_v2.0.a1 Prupe.2G150200_v2.0.a1 Prupe.2G150300_v2.0.a1 Prupe.2G150500_v2.0.a1 Prupe.2G151500_v2.0.a1 Prupe.2G151800_v2.0.a1
pyrus_communis pycom02g16040 pycom07g11720 pycom07g11750
rosa_chinensis RchiOBHm_Chr1g0351471 RchiOBHm_Chr1g0351501 RchiOBHm_Chr1g0351521 RchiOBHm_Chr1g0351531 RchiOBHm_Chr1g0351551 RchiOBHm_Chr1g0351561 RchiOBHm_Chr1g0351571 RchiOBHm_Chr6g0297861
rosa_laevigata RLG00000011555 RLG00000028400 RLG00000028401 RLG00000028402 RLG00000028403 RLG00000028404 RLG00000028405 RLG00000028406
rosa_multiflora Rmu_sc0001144.1_g000033 Rmu_sc0001144.1_g000038 Rmu_sc0001144.1_g000039 Rmu_sc0001144.1_g000040 Rmu_sc0003137.1_g000016 Rmu_sc0006343.1_g000010 Rmu_sc0025960.1_g000001 Rmu_ssc0000403.1_g000015
rosa_roxburghii Rroxscaffold_4G00303720 Rroxscaffold_4G00303730 Rroxscaffold_4G00303740 Rroxscaffold_4G00303750 Rroxscaffold_4G00303770 Rroxscaffold_4G00303780 Rroxscaffold_7G00170140 Rroxscaffold_7G00178990
rosa_rugosa Rorug01G0218300 Rorug01G0218400 Rorug01G0218400 Rorug01G0218500 Rorug01G0218800 Rorug06G0276100
rosa_samantha Rh1AG232900 Rh1AG233000 Rh1AG233200 Rh1AG233300 Rh1AG233400 Rh1AG233500 Rh1BG203800 Rh1BG203900 Rh1BG204000 Rh1BG204100 Rh1BG204200 Rh1CG217600 Rh1CG217800 Rh1CG217900 Rh1CG218000 Rh1CG218100 Rh1DG230700 Rh1DG230800 Rh1DG230900 Rh1DG231000 Rh6AG386700 Rh6BG395300 Rh6CG401100 Rh6DG387400
rosa_wichuraiana Rw1G020270 Rw1G020300 Rw1G020310 Rw1G020320 Rw1G020330 Rw1G020340 Rw1G020350 Rw6G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 288
AccII CGCG 3 cut(s) 310, 312, 924
AciI CCGC 3 cut(s) 198, 209, 312
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 4 cut(s) 31, 294, 318, 366
AcsI RAATTY 1 cut(s) 940
AfaI GTAC 2 cut(s) 596, 873
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 250, 664
AjiI CACGTC 2 cut(s) 364, 743
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 4 cut(s) 253, 629, 850, 890
AluI AGCT 4 cut(s) 253, 629, 850, 890
Alw26I GTCTC 2 cut(s) 420, 526
AlwI GGATC 1 cut(s) 220
AoxI GGCC 8 cut(s) 31, 90, 129, 274, 294, 318, 366, 540
ApeKI GCWGC 4 cut(s) 238, 376, 626, 890
ApoI RAATTY 1 cut(s) 940
Asp700I GAANNNNTTC 1 cut(s) 400
AspLEI GCGC 5 cut(s) 272, 310, 312, 332, 924
AspS9I GGNCC 3 cut(s) 129, 184, 206
AsuHPI GGTGA 3 cut(s) 253, 736, 870
AvaII GGWCC 2 cut(s) 184, 206
BalI TGGCCA 2 cut(s) 33, 320
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BauI CACGAG 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 4 cut(s) 225, 363, 638, 877
BccI CCATC 3 cut(s) 30, 221, 272
BceAI ACGGC 2 cut(s) 353, 930
BciT130I CCWGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 420, 526
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 172
BglII AGATCT 1 cut(s) 339
BisI GCNGC 5 cut(s) 239, 313, 377, 627, 891
BlsI GCNGC 5 cut(s) 240, 314, 378, 628, 892
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 184, 206
BmgBI CACGTC 2 cut(s) 364, 743
BmgT120I GGNCC 3 cut(s) 129, 184, 206
BmrFI CCNGG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 4 cut(s) 129, 553, 557, 963
BsaJI CCNNGG 2 cut(s) 28, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 151, 933
Bse3DI GCAATG 2 cut(s) 321, 968
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 28, 126
BseGI GGATG 1 cut(s) 820
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 2 cut(s) 321, 968
BseMII CTCAG 2 cut(s) 189, 339
BseNI ACTGG 2 cut(s) 151, 933
BsePI GCGCGC 1 cut(s) 308
BseRI GAGGAG 3 cut(s) 126, 245, 804
BseXI GCAGC 4 cut(s) 225, 363, 638, 877
BsgI GTGCAG 2 cut(s) 200, 794
Bsh1236I CGCG 3 cut(s) 310, 312, 924
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 8 cut(s) 33, 92, 131, 276, 296, 320, 368, 542
BsiEI CGRYCG 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 2 cut(s) 420, 526
BsmBI CGTCTC 1 cut(s) 420
BsmI GAATGC 2 cut(s) 670, 950
BsnI GGCC 8 cut(s) 33, 92, 131, 276, 296, 320, 368, 542
Bsp143I GATC 3 cut(s) 225, 339, 412
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 3 cut(s) 198, 209, 312
BspANI GGCC 8 cut(s) 33, 92, 131, 276, 296, 320, 368, 542
BspCNI CTCAG 2 cut(s) 188, 340
BspFNI CGCG 3 cut(s) 310, 312, 924
BspHI TCATGA 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 321, 968
BsrI ACTGG 2 cut(s) 151, 933
BssECI CCNNGG 2 cut(s) 28, 126
BssHII GCGCGC 1 cut(s) 308
BssMI GATC 3 cut(s) 225, 339, 412
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 876
Bst6I CTCTTC 1 cut(s) 709
BstC8I GCNNGC 5 cut(s) 168, 172, 274, 310, 328
BstDEI CTNAG 6 cut(s) 175, 336, 348, 468, 517, 528
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 820
BstFNI CGCG 3 cut(s) 310, 312, 924
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 5 cut(s) 272, 310, 312, 332, 924
BstKTI GATC 3 cut(s) 228, 342, 415
BstMAI GTCTC 2 cut(s) 420, 526
BstMBI GATC 3 cut(s) 225, 339, 412
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 3 cut(s) 310, 312, 924
BstV1I GCAGC 4 cut(s) 225, 363, 638, 877
BstX2I RGATCY 2 cut(s) 225, 339
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 2 cut(s) 225, 339
BsuRI GGCC 8 cut(s) 33, 92, 131, 276, 296, 320, 368, 542
BtgI CCRYGG 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 651
BtrI CACGTC 2 cut(s) 364, 743
BtsCI GGATG 1 cut(s) 820
BtsI GCAGTG 2 cut(s) 216, 782
BtsIMutI CAGTG 3 cut(s) 183, 216, 782
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 5 cut(s) 168, 172, 274, 310, 328
CciI TCATGA 1 cut(s) 390
CfoI GCGC 5 cut(s) 272, 310, 312, 332, 924
Cfr13I GGNCC 3 cut(s) 129, 184, 206
Csp6I GTAC 2 cut(s) 595, 872
CviAII CATG 5 cut(s) 29, 284, 391, 682, 836
CviQI GTAC 2 cut(s) 595, 872
DdeI CTNAG 6 cut(s) 175, 336, 348, 468, 517, 528
DpnI GATC 3 cut(s) 227, 341, 414
DpnII GATC 3 cut(s) 225, 339, 412
EaeI YGGCCR 4 cut(s) 31, 294, 318, 366
Eam1104I CTCTTC 1 cut(s) 709
EarI CTCTTC 1 cut(s) 709
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 28
Eco147I AGGCCT 2 cut(s) 276, 542
Eco47I GGWCC 2 cut(s) 184, 206
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 5 cut(s) 32, 287, 394, 685, 839
FaiI YATR 8 cut(s) 30, 285, 392, 564, 616, 683, 752, 837
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 683, 715, 879, 911
FatI CATG 5 cut(s) 28, 283, 390, 681, 835
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 239, 313, 377, 627, 891
FokI GGATG 1 cut(s) 827
Fsp4HI GCNGC 5 cut(s) 239, 313, 377, 627, 891
GlaI GCGC 5 cut(s) 271, 309, 311, 331, 923
GluI GCNGC 5 cut(s) 239, 313, 377, 627, 891
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 8 cut(s) 33, 92, 131, 276, 296, 320, 368, 542
HhaI GCGC 5 cut(s) 272, 310, 312, 332, 924
Hin1II CATG 5 cut(s) 32, 287, 394, 685, 839
Hin6I GCGC 5 cut(s) 270, 308, 310, 330, 922
HinP1I GCGC 5 cut(s) 270, 308, 310, 330, 922
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HphI GGTGA 3 cut(s) 253, 736, 870
Hpy166II GTNNAC 2 cut(s) 289, 620
Hpy188I TCNGA 2 cut(s) 412, 425
Hpy188III TCNNGA 4 cut(s) 146, 383, 391, 608
Hpy8I GTNNAC 2 cut(s) 289, 620
HpyAV CCTTC 2 cut(s) 197, 757
HpyCH4III ACNGT 1 cut(s) 876
HpyCH4IV ACGT 3 cut(s) 354, 363, 742
HpyCH4V TGCA 6 cut(s) 55, 181, 552, 626, 775, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 6 cut(s) 175, 336, 348, 468, 517, 528
HpySE526I ACGT 3 cut(s) 354, 363, 742
Hsp92II CATG 5 cut(s) 32, 287, 394, 685, 839
HspAI GCGC 5 cut(s) 270, 308, 310, 330, 922
Kzo9I GATC 3 cut(s) 225, 339, 412
LmnI GCTCC 1 cut(s) 258
Lsp1109I GCAGC 4 cut(s) 225, 363, 638, 877
MaeII ACGT 3 cut(s) 354, 363, 742
MaeIII GTNAC 2 cut(s) 259, 876
MalI GATC 3 cut(s) 227, 341, 414
MboI GATC 3 cut(s) 225, 339, 412
MboII GAAGA 4 cut(s) 334, 586, 726, 946
MflI RGATCY 2 cut(s) 225, 339
MlsI TGGCCA 2 cut(s) 33, 320
MluCI AATT 3 cut(s) 753, 940, 991
MluNI TGGCCA 2 cut(s) 33, 320
MmeI TCCRAC 1 cut(s) 478
Mox20I TGGCCA 2 cut(s) 33, 320
MroXI GAANNNNTTC 1 cut(s) 400
MscI TGGCCA 2 cut(s) 33, 320
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 2 cut(s) 27, 904
Msp20I TGGCCA 2 cut(s) 33, 320
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 2 cut(s) 670, 950
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 3 cut(s) 310, 312, 924
MwoI GCNNNNNNNGC 1 cut(s) 365
NcoI CCATGG 1 cut(s) 28
NdeII GATC 3 cut(s) 225, 339, 412
NlaIII CATG 5 cut(s) 32, 287, 394, 685, 839
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 259, 876
PagI TCATGA 1 cut(s) 390
PauI GCGCGC 1 cut(s) 308
PceI AGGCCT 2 cut(s) 276, 542
PcsI WCGNNNNNNNCGW 4 cut(s) 285, 294, 351, 360
PctI GAATGC 2 cut(s) 670, 950
PdmI GAANNNNTTC 1 cut(s) 400
PflFI GACNNNGTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 5 cut(s) 240, 314, 378, 628, 892
Ple19I CGATCG 1 cut(s) 415
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspPI GGNCC 3 cut(s) 129, 184, 206
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 2 cut(s) 225, 339
PsyI GACNNNGTC 1 cut(s) 284
PteI GCGCGC 1 cut(s) 308
PvuI CGATCG 1 cut(s) 415
RsaI GTAC 2 cut(s) 596, 873
RsaNI GTAC 2 cut(s) 595, 872
RseI CAYNNNNRTG 2 cut(s) 27, 904
SalI GTCGAC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 5 cut(s) 239, 313, 377, 627, 891
Sau3AI GATC 3 cut(s) 225, 339, 412
Sau96I GGNCC 3 cut(s) 129, 184, 206
ScrFI CCNGG 1 cut(s) 127
SinI GGWCC 2 cut(s) 184, 206
SmiMI CAYNNNNRTG 2 cut(s) 27, 904
SmlI CTYRAG 4 cut(s) 144, 536, 568, 978
SmoI CTYRAG 4 cut(s) 144, 536, 568, 978
Sse9I AATT 3 cut(s) 753, 940, 991
SseBI AGGCCT 2 cut(s) 276, 542
SsiI CCGC 3 cut(s) 198, 209, 312
SspI AATATT 1 cut(s) 400
StuI AGGCCT 2 cut(s) 276, 542
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 876
TaiI ACGT 3 cut(s) 357, 366, 745
TaqI TCGA 4 cut(s) 279, 288, 304, 384
TasI AATT 3 cut(s) 753, 940, 991
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 3 cut(s) 183, 223, 782
TseFI GTSAC 2 cut(s) 259, 876
TseI GCWGC 4 cut(s) 238, 376, 626, 890
Tsp45I GTSAC 2 cut(s) 259, 876
TspRI CASTG 3 cut(s) 183, 223, 782
Tth111I GACNNNGTC 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 184, 206
XapI RAATTY 1 cut(s) 940
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.