MD11G1102200.v1.1

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000562
Physical Location & Seq
Forward (+)
8608679 .. 8609604
926 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1102200.v1.1.491

Sequence Viewer

Length: 297 bp
ATGATACCAAGGTCCTCACAACAATTTCAACCTCATTTCAAGGCACAACTTGCTAATGCTCACGCTCCTACTATCTCACAAGGATCCATGGAGTTCACTGCCAATCCATTGTCATTGATCAATGAATTTGCAGCTTACCTACAAAGTAAGGGGCACGGAGGAGGCTCACATGGTCAAGGCAATGAAGAGGGTAGTCACACAGCTATGTTGGGACAATTTGCCGGATTTCTTGCTGGAAATGAGAAAGTTCCAAAGGGAGAAGCATCAGGATGTTCTCACCATGAAGATGATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

99

Amino Acids

10.41

Weight (kDa)

5.9

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 78, 91
AcsI RAATTY 1 cut(s) 125
AgsI TTSAA 2 cut(s) 29, 40
AluBI AGCT 2 cut(s) 134, 203
AluI AGCT 2 cut(s) 134, 203
AlwI GGATC 2 cut(s) 78, 91
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 156
BaeI ACNNNNGTAYC 1 cut(s) 29
BamHI GGATCC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 143
BclI TGATCA 1 cut(s) 117
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 8, 87
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 8, 87
BseGI GGATG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 83, 117
Bsp19I CCATGG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 2 cut(s) 78, 91
BsrDI GCAATG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 8, 87
BssMI GATC 2 cut(s) 83, 117
BssT1I CCWWGG 2 cut(s) 8, 87
Bst6I CTCTTC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 275
BstKTI GATC 2 cut(s) 86, 120
BstMBI GATC 2 cut(s) 83, 117
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 12
CviAII CATG 3 cut(s) 88, 170, 281
CviJI RGCY 3 cut(s) 134, 165, 203
CviKI_1 RGCY 3 cut(s) 134, 165, 203
DpnI GATC 2 cut(s) 85, 119
DpnII GATC 2 cut(s) 83, 117
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 8, 87
Eco47I GGWCC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 12
EcoT14I CCWWGG 2 cut(s) 8, 87
ErhI CCWWGG 2 cut(s) 8, 87
FaeI CATG 3 cut(s) 91, 173, 284
FaiI YATR 4 cut(s) 89, 171, 206, 282
FaqI GGGAC 1 cut(s) 225
FatI CATG 3 cut(s) 87, 169, 280
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HapII CCGG 1 cut(s) 222
Hin1II CATG 3 cut(s) 91, 173, 284
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 267
Hpy8I GTNNAC 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 3 cut(s) 91, 173, 284
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 83, 117
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 219, 235, 252
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 85, 119
MboI GATC 2 cut(s) 83, 117
MboII GAAGA 2 cut(s) 197, 296
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 3 cut(s) 23, 125, 215
MnlI CCTC 5 cut(s) 25, 42, 152, 155, 181
MslI CAYNNNNRTG 3 cut(s) 203, 268, 285
MspI CCGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 83, 117
NlaIII CATG 3 cut(s) 91, 173, 284
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 12
PspPPI RGGWCCY 1 cut(s) 12
PsuI RGATCY 1 cut(s) 83
RseI CAYNNNNRTG 3 cut(s) 203, 268, 285
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 83, 117
Sau96I GGNCC 1 cut(s) 12
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 14, 34, 136, 141, 205
SfaNI GCATC 1 cut(s) 272
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 3 cut(s) 203, 268, 285
Sse9I AATT 3 cut(s) 23, 125, 215
StyI CCWWGG 2 cut(s) 8, 87
TasI AATT 3 cut(s) 23, 125, 215
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 138, 198, 297
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.