Prupe.1G465400_v2.0.a1

Pfam:UBN2_3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000562
Physical Location & Seq
Reverse (-)
38815865 .. 38816815
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G465400.1

Sequence Viewer

Length: 324 bp
ATGAGGATTGGTGTTGAAAGTGAAGGATTAGCATATGGGTCCAACTACTCTGCGTGGTCTCGTAGTGTTCGTTTGGCCATTACTACTCGTCGTATGGCTGGTTTCATCAATGGTAAAAACATTGTCCCTGCCATTAATGACTCTAGCTATGACGCTTGGGATGAAGACAATTTTTTGGTGCAGTCATGGCTCCTTAACTCCATGACTAAGAATGTACGTGTCTTATTTGATCACTGCCCAACTGCTTGTGTGGTGTGGGAAGCAACTCGGAAAACCTATGCCGTCACTCAAAATAGCTCCAAGTTGTACCAACTCCGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3

Protein Analysis

108

Amino Acids

12.19

Weight (kDa)

9.06

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 75
AfaI GTAC 2 cut(s) 216, 308
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 2 cut(s) 147, 297
AluI AGCT 2 cut(s) 147, 297
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 1 cut(s) 75
AseI ATTAAT 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 39
AvaII GGWCC 1 cut(s) 39
BalI TGGCCA 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 266
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 40, 191
BpiI GAAGAC 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 63
BseGI GGATG 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 40, 191
BspTNI GGTCTC 1 cut(s) 63
BssMI GATC 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 215, 307
CviAII CATG 2 cut(s) 186, 202
CviJI RGCY 5 cut(s) 77, 98, 147, 190, 297
CviKI_1 RGCY 5 cut(s) 77, 98, 147, 190, 297
CviQI GTAC 2 cut(s) 215, 307
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 39
FaeI CATG 2 cut(s) 189, 205
FaiI YATR 7 cut(s) 34, 36, 95, 150, 187, 203, 279
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 185, 201
FauNDI CATATG 1 cut(s) 34
FbaI TGATCA 1 cut(s) 229
FokI GGATG 1 cut(s) 173
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 1 cut(s) 161
Hin1II CATG 2 cut(s) 189, 205
HinfI GANTC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 270
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 2 cut(s) 189, 205
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 195, 302
LpnPI CCDG 2 cut(s) 84, 141
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 283
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 1 cut(s) 169
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 2 cut(s) 135, 195
Msp20I TGGCCA 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 189, 205
NlaIV GGNNCC 2 cut(s) 40, 191
NmuCI GTSAC 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 218
PshBI ATTAAT 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 40, 191
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 2 cut(s) 216, 308
RsaNI GTAC 2 cut(s) 215, 307
SaqAI TTAA 2 cut(s) 135, 195
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 134
SetI ASST 4 cut(s) 149, 220, 278, 299
SinI GGWCC 1 cut(s) 39
Sse9I AATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 144
TaiI ACGT 1 cut(s) 220
TasI AATT 1 cut(s) 169
Tru1I TTAA 2 cut(s) 135, 195
Tru9I TTAA 2 cut(s) 135, 195
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 94, 177
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 39
VspI ATTAAT 1 cut(s) 135
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.