Rw2G051280

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000562
Physical Location & Seq
Forward (+)
79026740 .. 79030056
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051280.1

Sequence Viewer

Length: 1917 bp
ATGGCTGGAGAAATTTCTTCTGATACTGATGACTTTAATCCTTTTAGTATCAATTCCAATCCAAACATGTCAAGTGTTTATGAAGTTGAGGGTAATCCCAATCAACGTTTGAGTTCAGTTTTATTAACTGAATACAATTATCTTCCCTGGTCTAGAGCTATCACTTTGGCACTTGGAGGAAGATCAAGGCTTGGATATGTCAATGGAGTTATACCAATGCCTGACATCAACTCCACCACTTATGATGCTTGGCTTTGCAAAGATCAACTTGTCATGTCTTGCTACTCAGAATCATCCATGCACCTGTGGAAGCATGTCAAAGAGATGTATGGAAACCAAAACGACTCTGCTCGTGTTTTTCAACTCAAGAAAGATATTGCTAGTCTCCAACAAGAGGAGAAGTCTTTTGTTCAATATCTTGGAAGCCTAACAAGTATGTGGAATGAGTTAGATGTATATCGACCTCACACCACAGATGCTAATGTCCTATTGAAGAGGGCTGAAGAAGACAAGATTTTTCAGCTTCTTGCTAATCTAGGCTCAGAATATGAAGACTTGAGAAGCCACATCCTTATGAACTCTGAACTGCCTTCCTTCAAAAGTGTGTGTGGCACCGTTCAAAGAGAAGAACTTCGAAGGAAAGTGATGAACCTGGACGTCAAGACCAATATTGCAGATTCAAGGGCATATGCTTCAAATCATAAGCAAGCTGATGACAGAGATAGGTGCTGGATACTTCATCCAGAATTGAAGCCAAAGTTTTCGAAGGAAAACAAAAGCATATTAAAAAACTGGAGTACCAATCCTCACAAGGCCAACCTTTCTTCCTCTTCCACCTCAGATGGGATGTTAGATTTCACTTCAAATCCAACTTCACTCATAAATGAGTTTGCTGTTTACCTTCAACAAAAGCAGAAGAAGATAGAGGATACAAGTGCAACTGGAGCTGAAAATCACACTGCCTTACTGGGCAAGTTTGCAGGCTTTCTTGCTGAAACTGACAATGTGAATCAAAGTGATATTCCAGGTATTTTGAAAGCCTTTGACACTGCACTTAATATAGGTCTTGAGCATGATTATTGGATTATAGATTCTGGAGCCACAGATCACATGACAAACAAACGTACAAACTTGCATGATTTTAAAAAATTGTCTTCTCAAGACATCATTACTCAGAGGACGATTGGTGAAGGTTTTTTTTCGATTGGACTTTATTACTTATCTAAGAAGTCCAAGGTCTTTCAATCTACTCTTTATTTCACAAGGAAACTCGATATTAATGGTCAGGGGGAGTCATTCCATGATTTATTTCCTCTTCCTAACCCAGCTATTGATATTGAAAGGTCCCCTATTATGCCTGTTCCTACTCCTAATCATGAGCCCCATGATCATGATCAACATGAAGTTTGGAAACAAGCCATGGATGAAGAGCTCCAAGCTCTTAATGACAATGAAACTTGGAGTGTTGTCAAGCTTCCTAAAGGAAAGAAAGCAGTGGGAAGTAGATGGATTTACAAAAACAAGTTCCATTCTGATGGAACCATTGAGAGACACAAGGCTCGATTAGTTGCTCGAGGATTTACACAAACCTATGGAGTGGATTACAAAGAAACATTTGCTCCAGTTGCAAAAATGAATACTGTTCGGGTATTGCTGTCTCTGGCTGTTAACCAGGCTTGGTCATTACACCAAATGGATGTCAAAAATGCATTTTTACATGGAGAGCTCGAAGAGGAAGTGTACATGAAACTTCCACCTAGTCATCCCCAATCCCATGATCCTGAACAGGTGTGCAAGCTTCACAAAGCCATTTATGGCTTAAAGCAGTCTCCGCGAGCCTGGTATGCTAAACTCAGTTTTGTCCTTGAAGAAGTTGGATTTCACAGAAGCAATGCTGATTCTTCACTCTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

638

Amino Acids

72.63

Weight (kDa)

6.26

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 33 - 74 3.1e-11 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 96 - 215 7.4e-07 gag-polypeptide of LTR copia-type
RVT_2 PF07727 484 - 638 6.5e-54 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 611
AccII CGCG 1 cut(s) 1834
AciI CCGC 1 cut(s) 1832
AclI AACGTT 1 cut(s) 106
AclWI GGATC 1 cut(s) 1772
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 3 cut(s) 799, 1126, 1742
AfiI CCNNNNNNNGG 2 cut(s) 394, 843
AflIII ACRYGT 1 cut(s) 66
AjnI CCWGG 5 cut(s) 146, 651, 1024, 1671, 1838
Alw21I GWGCWC 2 cut(s) 1434, 1728
Alw26I GTCTC 4 cut(s) 389, 1543, 1662, 1833
AlwI GGATC 1 cut(s) 1772
Ama87I CYCGRG 1 cut(s) 1572
AoxI GGCC 1 cut(s) 813
ApoI RAATTY 1 cut(s) 12
AseI ATTAAT 1 cut(s) 1278
Asp700I GAANNNNTTC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 1344
AsuHPI GGTGA 1 cut(s) 1199
AsuII TTCGAA 2 cut(s) 634, 764
AvaI CYCGRG 1 cut(s) 1572
AvaII GGWCC 1 cut(s) 1344
BaeI ACNNNNGTAYC 2 cut(s) 781, 814
BanI GGYRCC 1 cut(s) 611
BanII GRGCYC 3 cut(s) 1383, 1434, 1728
BauI CACGAG 1 cut(s) 351
BbsI GAAGAC 3 cut(s) 513, 558, 1146
Bbv12I GWGCWC 2 cut(s) 1434, 1728
BccI CCATC 3 cut(s) 836, 1500, 1529
BciT130I CCWGG 5 cut(s) 148, 653, 1026, 1673, 1840
BciVI GTATCC 2 cut(s) 726, 922
BclI TGATCA 2 cut(s) 1387, 1393
BcoDI GTCTC 4 cut(s) 389, 1543, 1662, 1833
BfaI CTAG 4 cut(s) 153, 381, 536, 1758
BfuI GTATCC 2 cut(s) 726, 922
Bme1390I CCNGG 5 cut(s) 148, 653, 1026, 1673, 1840
Bme18I GGWCC 1 cut(s) 1344
BmeT110I CYCGRG 1 cut(s) 1572
BmgT120I GGNCC 1 cut(s) 1344
BmiI GGNNCC 4 cut(s) 613, 1099, 1346, 1540
BmrFI CCNGG 5 cut(s) 148, 653, 1026, 1673, 1840
BmrI ACTGGG 1 cut(s) 977
BmsI GCATC 2 cut(s) 235, 466
BmuI ACTGGG 1 cut(s) 977
BpiI GAAGAC 3 cut(s) 513, 558, 1146
BpmI CTGGAG 5 cut(s) 27, 814, 963, 1116, 1605
Bpu14I TTCGAA 2 cut(s) 634, 764
BpuEI CTTGAG 4 cut(s) 350, 577, 1088, 1143
BsaBI GATNNNNATC 2 cut(s) 456, 1392
BsaHI GRCGYC 1 cut(s) 657
BsaJI CCNNGG 3 cut(s) 146, 1233, 1419
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 1603, 1633
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 843
Bse1I ACTGG 4 cut(s) 797, 946, 972, 1622
Bse3DI GCAATG 1 cut(s) 1897
Bse8I GATNNNNATC 2 cut(s) 456, 1392
BseBI CCWGG 5 cut(s) 148, 653, 1026, 1673, 1840
BseDI CCNNGG 3 cut(s) 146, 1233, 1419
BseGI GGATG 7 cut(s) 293, 567, 739, 852, 1429, 1702, 1762
BseJI GATNNNNATC 2 cut(s) 456, 1392
BseLI CCNNNNNNNGG 2 cut(s) 394, 843
BseMI GCAATG 1 cut(s) 1897
BseMII CTCAG 5 cut(s) 300, 555, 852, 1187, 1867
BseNI ACTGG 4 cut(s) 797, 946, 972, 1622
BseRI GAGGAG 1 cut(s) 410
BseYI CCCAGC 1 cut(s) 1324
BsgI GTGCAG 1 cut(s) 1035
Bsh1236I CGCG 1 cut(s) 1834
BshFI GGCC 1 cut(s) 815
BshNI GGYRCC 1 cut(s) 611
BsiHKAI GWGCWC 2 cut(s) 1434, 1728
BsiHKCI CYCGRG 1 cut(s) 1572
BslFI GGGAC 1 cut(s) 1330
BslI CCNNNNNNNGG 2 cut(s) 394, 843
BsmAI GTCTC 4 cut(s) 389, 1543, 1662, 1833
BsmFI GGGAC 1 cut(s) 1330
BsnI GGCC 1 cut(s) 815
BsoBI CYCGRG 1 cut(s) 1572
Bsp119I TTCGAA 2 cut(s) 634, 764
Bsp1286I GDGCHC 3 cut(s) 1383, 1434, 1728
Bsp1407I TGTACA 1 cut(s) 1740
Bsp143I GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
Bsp19I CCATGG 1 cut(s) 1419
BspACI CCGC 1 cut(s) 1832
BspANI GGCC 1 cut(s) 815
BspCNI CTCAG 5 cut(s) 299, 554, 851, 1186, 1866
BspFNI CGCG 1 cut(s) 1834
BspHI TCATGA 2 cut(s) 1375, 1390
BspLI GGNNCC 4 cut(s) 613, 1099, 1346, 1540
BspPI GGATC 1 cut(s) 1772
BspQI GCTCTTC 1 cut(s) 1422
BspT104I TTCGAA 2 cut(s) 634, 764
BspT107I GGYRCC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 1897
BsrGI TGTACA 1 cut(s) 1740
BsrI ACTGG 4 cut(s) 797, 946, 972, 1622
BssECI CCNNGG 3 cut(s) 146, 1233, 1419
BssMI GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
BssNI GRCGYC 1 cut(s) 657
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 1233, 1419
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 5 cut(s) 148, 653, 1026, 1673, 1840
Bst4CI ACNGT 2 cut(s) 616, 1642
Bst6I CTCTTC 5 cut(s) 488, 835, 1320, 1422, 1725
BstACI GRCGYC 1 cut(s) 657
BstAUI TGTACA 1 cut(s) 1740
BstBI TTCGAA 2 cut(s) 634, 764
BstC8I GCNNGC 4 cut(s) 708, 982, 1796, 1836
BstDEI CTNAG 6 cut(s) 286, 541, 838, 1173, 1224, 1853
BstDSI CCRYGG 1 cut(s) 1419
BstF5I GGATG 7 cut(s) 293, 567, 739, 852, 1429, 1702, 1762
BstFNI CGCG 1 cut(s) 1834
BstKTI GATC 6 cut(s) 185, 265, 1108, 1390, 1396, 1780
BstMAI GTCTC 4 cut(s) 389, 1543, 1662, 1833
BstMBI GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
BstMWI GCNNNNNNNGC 4 cut(s) 944, 1625, 1831, 1844
BstNI CCWGG 5 cut(s) 148, 653, 1026, 1673, 1840
BstNSI RCATGY 2 cut(s) 70, 317
BstSCI CCNGG 5 cut(s) 146, 651, 1024, 1671, 1838
BstUI CGCG 1 cut(s) 1834
BstV2I GAAGAC 3 cut(s) 513, 558, 1146
BstXI CCANNNNNNTGG 1 cut(s) 1535
BsuI GTATCC 2 cut(s) 726, 922
BsuRI GGCC 1 cut(s) 815
BtgI CCRYGG 1 cut(s) 1419
BtsCI GGATG 7 cut(s) 293, 567, 739, 852, 1429, 1702, 1762
BtsI GCAGTG 3 cut(s) 957, 1047, 1500
BtsIMutI CAGTG 3 cut(s) 957, 1047, 1500
Cac8I GCNNGC 4 cut(s) 708, 982, 1796, 1836
CciI TCATGA 2 cut(s) 1375, 1390
Cfr13I GGNCC 1 cut(s) 1344
Csp6I GTAC 3 cut(s) 798, 1125, 1741
CviQI GTAC 3 cut(s) 798, 1125, 1741
DdeI CTNAG 6 cut(s) 286, 541, 838, 1173, 1224, 1853
DpnI GATC 6 cut(s) 184, 264, 1107, 1389, 1395, 1779
DpnII GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
DraI TTTAAA 1 cut(s) 1144
Eam1104I CTCTTC 5 cut(s) 488, 835, 1320, 1422, 1725
EarI CTCTTC 5 cut(s) 488, 835, 1320, 1422, 1725
Ecl136II GAGCTC 2 cut(s) 1432, 1726
Eco130I CCWWGG 2 cut(s) 1233, 1419
Eco24I GRGCYC 3 cut(s) 1383, 1434, 1728
Eco47I GGWCC 1 cut(s) 1344
Eco53kI GAGCTC 2 cut(s) 1432, 1726
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 1572
EcoICRI GAGCTC 2 cut(s) 1432, 1726
EcoO109I RGGNCCY 1 cut(s) 1344
EcoRII CCWGG 5 cut(s) 146, 651, 1024, 1671, 1838
EcoT14I CCWWGG 2 cut(s) 1233, 1419
EcoT22I ATGCAT 1 cut(s) 1711
EcoT38I GRGCYC 3 cut(s) 1383, 1434, 1728
ErhI CCWWGG 2 cut(s) 1233, 1419
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 1 cut(s) 1330
FauNDI CATATG 1 cut(s) 688
FbaI TGATCA 2 cut(s) 1387, 1393
FokI GGATG 7 cut(s) 280, 554, 726, 859, 1436, 1709, 1749
FriOI GRGCYC 3 cut(s) 1383, 1434, 1728
FspBI CTAG 4 cut(s) 153, 381, 536, 1758
GsaI CCCAGC 1 cut(s) 1328
GsuI CTGGAG 5 cut(s) 27, 814, 963, 1116, 1605
HaeIII GGCC 1 cut(s) 815
Hin1I GRCGYC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 1669
HindII GTYRAC 1 cut(s) 1669
HindIII AAGCTT 2 cut(s) 1472, 1796
HinfI GANTC 7 cut(s) 290, 344, 677, 1009, 1091, 1292, 1898
HpaI GTTAAC 1 cut(s) 1669
HphI GGTGA 1 cut(s) 1199
Hpy166II GTNNAC 3 cut(s) 898, 1669, 1741
Hpy188I TCNGA 7 cut(s) 22, 289, 544, 583, 841, 1176, 1534
Hpy8I GTNNAC 3 cut(s) 898, 1669, 1741
HpyAV CCTTC 6 cut(s) 600, 604, 630, 760, 911, 1184
HpyCH4III ACNGT 2 cut(s) 616, 1642
HpyCH4IV ACGT 3 cut(s) 106, 657, 1123
HpyF10VI GCNNNNNNNGC 4 cut(s) 944, 1625, 1831, 1844
HpyF3I CTNAG 6 cut(s) 286, 541, 838, 1173, 1224, 1853
HpySE526I ACGT 3 cut(s) 106, 657, 1123
Hsp92I GRCGYC 1 cut(s) 657
Ksp22I TGATCA 2 cut(s) 1387, 1393
KspAI GTTAAC 1 cut(s) 1669
Kzo9I GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
LguI GCTCTTC 1 cut(s) 1422
LmnI GCTCC 4 cut(s) 944, 1097, 1437, 1624
LweI GCATC 2 cut(s) 235, 466
MaeI CTAG 4 cut(s) 153, 381, 536, 1758
MaeII ACGT 3 cut(s) 106, 657, 1123
MalI GATC 6 cut(s) 184, 264, 1107, 1389, 1395, 1779
MboI GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
MhlI GDGCHC 3 cut(s) 1383, 1434, 1728
MluCI AATT 5 cut(s) 12, 52, 136, 746, 1148
MlyI GAGTC 2 cut(s) 338, 1301
MmeI TCCRAC 3 cut(s) 412, 893, 1855
Mph1103I ATGCAT 1 cut(s) 1711
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 9 cut(s) 36, 125, 785, 1056, 1143, 1278, 1443, 1668, 1820
MslI CAYNNNNRTG 3 cut(s) 572, 1389, 1533
MspR9I CCNGG 5 cut(s) 148, 653, 1026, 1673, 1840
MvaI CCWGG 5 cut(s) 148, 653, 1026, 1673, 1840
MvnI CGCG 1 cut(s) 1834
MwoI GCNNNNNNNGC 4 cut(s) 944, 1625, 1831, 1844
NcoI CCATGG 1 cut(s) 1419
NdeI CATATG 1 cut(s) 688
NdeII GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
NlaIV GGNNCC 4 cut(s) 613, 1099, 1346, 1540
NsiI ATGCAT 1 cut(s) 1711
NspI RCATGY 2 cut(s) 70, 317
NspV TTCGAA 2 cut(s) 634, 764
PaeR7I CTCGAG 1 cut(s) 1572
PagI TCATGA 2 cut(s) 1375, 1390
PciI ACATGT 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 1422
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 5 cut(s) 290, 677, 1009, 1091, 1898
PleI GAGTC 2 cut(s) 338, 1300
PpsI GAGTC 2 cut(s) 338, 1300
PpuMI RGGWCCY 1 cut(s) 1344
PscI ACATGT 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 1278
Psp124BI GAGCTC 2 cut(s) 1434, 1728
Psp1406I AACGTT 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 1344
Psp6I CCWGG 5 cut(s) 146, 651, 1024, 1671, 1838
PspFI CCCAGC 1 cut(s) 1324
PspGI CCWGG 5 cut(s) 146, 651, 1024, 1671, 1838
PspN4I GGNNCC 4 cut(s) 613, 1099, 1346, 1540
PspPI GGNCC 1 cut(s) 1344
PspPPI RGGWCCY 1 cut(s) 1344
PspXI VCTCGAGB 1 cut(s) 1572
RsaI GTAC 3 cut(s) 799, 1126, 1742
RsaNI GTAC 3 cut(s) 798, 1125, 1741
RseI CAYNNNNRTG 3 cut(s) 572, 1389, 1533
SacI GAGCTC 2 cut(s) 1434, 1728
SapI GCTCTTC 1 cut(s) 1422
SaqAI TTAA 9 cut(s) 36, 125, 785, 1056, 1143, 1278, 1443, 1668, 1820
Sau3AI GATC 6 cut(s) 182, 262, 1105, 1387, 1393, 1777
Sau96I GGNCC 1 cut(s) 1344
SchI GAGTC 2 cut(s) 338, 1301
ScrFI CCNGG 5 cut(s) 148, 653, 1026, 1673, 1840
SduI GDGCHC 3 cut(s) 1383, 1434, 1728
SfaNI GCATC 2 cut(s) 235, 466
Sfr274I CTCGAG 1 cut(s) 1572
SfuI TTCGAA 2 cut(s) 634, 764
SinI GGWCC 1 cut(s) 1344
SlaI CTCGAG 1 cut(s) 1572
SmiMI CAYNNNNRTG 3 cut(s) 572, 1389, 1533
SmlI CTYRAG 5 cut(s) 365, 556, 1067, 1158, 1572
SmoI CTYRAG 5 cut(s) 365, 556, 1067, 1158, 1572
Sse9I AATT 5 cut(s) 12, 52, 136, 746, 1148
SsiI CCGC 1 cut(s) 1832
SspI AATATT 1 cut(s) 670
SspMI CTAG 4 cut(s) 153, 381, 536, 1758
SstI GAGCTC 2 cut(s) 1434, 1728
StyD4I CCNGG 5 cut(s) 146, 651, 1024, 1671, 1838
StyI CCWWGG 2 cut(s) 1233, 1419
TaaI ACNGT 2 cut(s) 616, 1642
TaiI ACGT 3 cut(s) 109, 660, 1126
TaqI TCGA 8 cut(s) 460, 634, 764, 1202, 1272, 1561, 1573, 1728
TasI AATT 5 cut(s) 12, 52, 136, 746, 1148
TatI WGTACW 1 cut(s) 1740
TfiI GAWTC 5 cut(s) 290, 677, 1009, 1091, 1898
Tru1I TTAA 9 cut(s) 36, 125, 785, 1056, 1143, 1278, 1443, 1668, 1820
Tru9I TTAA 9 cut(s) 36, 125, 785, 1056, 1143, 1278, 1443, 1668, 1820
TscAI CASTG 3 cut(s) 964, 1054, 1500
TspRI CASTG 3 cut(s) 964, 1054, 1500
VpaK11BI GGWCC 1 cut(s) 1344
VspI ATTAAT 1 cut(s) 1278
XapI RAATTY 1 cut(s) 12
XbaI TCTAGA 1 cut(s) 152
XceI RCATGY 2 cut(s) 70, 317
XhoI CTCGAG 1 cut(s) 1572
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 4 cut(s) 153, 381, 536, 1758
ZraI GACGTC 1 cut(s) 658
Zsp2I ATGCAT 1 cut(s) 1711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.