transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1674 |
| AclWI | GGATC | 3 cut(s) | 240, 1158, 1442 |
| AcsI | RAATTY | 6 cut(s) | 101, 285, 794, 926, 1174, 1548 |
| AcuI | CTGAAG | 3 cut(s) | 383, 705, 1053 |
| AfaI | GTAC | 3 cut(s) | 698, 1075, 1714 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 987 |
| AflII | CTTAAG | 1 cut(s) | 508 |
| AflIII | ACRYGT | 1 cut(s) | 748 |
| AjnI | CCWGG | 3 cut(s) | 653, 849, 985 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 33 |
| Alw26I | GTCTC | 5 cut(s) | 500, 623, 1034, 1265, 1679 |
| AlwI | GGATC | 3 cut(s) | 240, 1158, 1442 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 732, 1043 |
| Ama87I | CYCGRG | 1 cut(s) | 363 |
| AoxI | GGCC | 1 cut(s) | 1754 |
| ApeKI | GCWGC | 3 cut(s) | 359, 726, 932 |
| ApoI | RAATTY | 6 cut(s) | 101, 285, 794, 926, 1174, 1548 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 101, 603 |
| AsuHPI | GGTGA | 5 cut(s) | 628, 889, 980, 1213, 1250 |
| AsuII | TTCGAA | 2 cut(s) | 607, 1546 |
| AvaI | CYCGRG | 1 cut(s) | 363 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 627, 660 |
| BauI | CACGAG | 1 cut(s) | 1647 |
| BbsI | GAAGAC | 2 cut(s) | 297, 1235 |
| BbvI | GCAGC | 3 cut(s) | 371, 738, 919 |
| BccI | CCATC | 2 cut(s) | 571, 1604 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1616, 1650 |
| BciT130I | CCWGG | 3 cut(s) | 655, 851, 987 |
| BcoDI | GTCTC | 5 cut(s) | 500, 623, 1034, 1265, 1679 |
| BfaI | CTAG | 4 cut(s) | 123, 461, 492, 1353 |
| BfmI | CTRYAG | 1 cut(s) | 1569 |
| BfrI | CTTAAG | 1 cut(s) | 508 |
| BglII | AGATCT | 1 cut(s) | 1213 |
| BisI | GCNGC | 3 cut(s) | 360, 727, 933 |
| BlsI | GCNGC | 3 cut(s) | 361, 728, 934 |
| Bme1390I | CCNGG | 3 cut(s) | 655, 851, 987 |
| BmeT110I | CYCGRG | 1 cut(s) | 363 |
| BmrFI | CCNGG | 3 cut(s) | 655, 851, 987 |
| BmsI | GCATC | 4 cut(s) | 322, 436, 945, 1339 |
| BpiI | GAAGAC | 2 cut(s) | 297, 1235 |
| Bpu10I | CCTNAGC | 1 cut(s) | 780 |
| Bpu14I | TTCGAA | 2 cut(s) | 607, 1546 |
| BsaBI | GATNNNNATC | 1 cut(s) | 63 |
| BsaI | GGTCTC | 2 cut(s) | 623, 1265 |
| BsaJI | CCNNGG | 3 cut(s) | 264, 654, 986 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 884, 914 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 987 |
| Bse8I | GATNNNNATC | 1 cut(s) | 63 |
| BseBI | CCWGG | 3 cut(s) | 655, 851, 987 |
| BseDI | CCNNGG | 3 cut(s) | 264, 654, 986 |
| BseGI | GGATG | 5 cut(s) | 34, 1123, 1465, 1615, 1777 |
| BseJI | GATNNNNATC | 1 cut(s) | 63 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 987 |
| BseMII | CTCAG | 4 cut(s) | 291, 477, 771, 1152 |
| BseRI | GAGGAG | 1 cut(s) | 1424 |
| BseXI | GCAGC | 3 cut(s) | 371, 738, 919 |
| BseYI | CCCAGC | 1 cut(s) | 5 |
| BshFI | GGCC | 1 cut(s) | 1756 |
| BsiHKCI | CYCGRG | 1 cut(s) | 363 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 987 |
| BsmAI | GTCTC | 5 cut(s) | 500, 623, 1034, 1265, 1679 |
| BsnI | GGCC | 1 cut(s) | 1756 |
| Bso31I | GGTCTC | 2 cut(s) | 623, 1265 |
| BsoBI | CYCGRG | 1 cut(s) | 363 |
| Bsp119I | TTCGAA | 2 cut(s) | 607, 1546 |
| Bsp1407I | TGTACA | 1 cut(s) | 696 |
| Bsp143I | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| Bsp19I | CCATGG | 1 cut(s) | 264 |
| BspANI | GGCC | 1 cut(s) | 1756 |
| BspCNI | CTCAG | 4 cut(s) | 292, 478, 772, 1151 |
| BspHI | TCATGA | 1 cut(s) | 1519 |
| BspPI | GGATC | 3 cut(s) | 240, 1158, 1442 |
| BspT104I | TTCGAA | 2 cut(s) | 607, 1546 |
| BspTI | CTTAAG | 1 cut(s) | 508 |
| BspTNI | GGTCTC | 2 cut(s) | 623, 1265 |
| BsrGI | TGTACA | 1 cut(s) | 696 |
| BssECI | CCNNGG | 3 cut(s) | 264, 654, 986 |
| BssMI | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| BssSI | CACGAG | 1 cut(s) | 1647 |
| BssT1I | CCWWGG | 1 cut(s) | 264 |
| Bst2BI | CACGAG | 1 cut(s) | 1647 |
| Bst2UI | CCWGG | 3 cut(s) | 655, 851, 987 |
| Bst4CI | ACNGT | 2 cut(s) | 734, 1717 |
| Bst6I | CTCTTC | 1 cut(s) | 877 |
| BstAFI | CTTAAG | 1 cut(s) | 508 |
| BstAUI | TGTACA | 1 cut(s) | 696 |
| BstBI | TTCGAA | 2 cut(s) | 607, 1546 |
| BstC8I | GCNNGC | 4 cut(s) | 505, 681, 1027, 1636 |
| BstDEI | CTNAG | 8 cut(s) | 80, 156, 300, 486, 555, 780, 941, 1138 |
| BstDSI | CCRYGG | 1 cut(s) | 264 |
| BstF5I | GGATG | 5 cut(s) | 34, 1123, 1465, 1615, 1777 |
| BstKTI | GATC | 6 cut(s) | 235, 397, 1153, 1216, 1319, 1450 |
| BstMAI | GTCTC | 5 cut(s) | 500, 623, 1034, 1265, 1679 |
| BstMBI | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 851, 1700 |
| BstNI | CCWGG | 3 cut(s) | 655, 851, 987 |
| BstNSI | RCATGY | 1 cut(s) | 752 |
| BstSCI | CCNGG | 3 cut(s) | 653, 849, 985 |
| BstSFI | CTRYAG | 1 cut(s) | 1569 |
| BstV1I | GCAGC | 3 cut(s) | 371, 738, 919 |
| BstV2I | GAAGAC | 2 cut(s) | 297, 1235 |
| BstX2I | RGATCY | 1 cut(s) | 1213 |
| BstYI | RGATCY | 1 cut(s) | 1213 |
| BsuRI | GGCC | 1 cut(s) | 1756 |
| BtgI | CCRYGG | 1 cut(s) | 264 |
| BtsCI | GGATG | 5 cut(s) | 34, 1123, 1465, 1615, 1777 |
| BtsIMutI | CAGTG | 1 cut(s) | 1722 |
| Cac8I | GCNNGC | 4 cut(s) | 505, 681, 1027, 1636 |
| CaiI | CAGNNNCTG | 2 cut(s) | 732, 1043 |
| CciI | TCATGA | 1 cut(s) | 1519 |
| Csp6I | GTAC | 3 cut(s) | 697, 1074, 1713 |
| CviQI | GTAC | 3 cut(s) | 697, 1074, 1713 |
| DdeI | CTNAG | 8 cut(s) | 80, 156, 300, 486, 555, 780, 941, 1138 |
| DpnI | GATC | 6 cut(s) | 234, 396, 1152, 1215, 1318, 1449 |
| DpnII | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| Eam1104I | CTCTTC | 1 cut(s) | 877 |
| EarI | CTCTTC | 1 cut(s) | 877 |
| Eco130I | CCWWGG | 1 cut(s) | 264 |
| Eco31I | GGTCTC | 2 cut(s) | 623, 1265 |
| Eco57I | CTGAAG | 3 cut(s) | 383, 705, 1053 |
| Eco88I | CYCGRG | 1 cut(s) | 363 |
| EcoRI | GAATTC | 1 cut(s) | 1548 |
| EcoRII | CCWGG | 3 cut(s) | 653, 849, 985 |
| EcoT14I | CCWWGG | 1 cut(s) | 264 |
| EcoT22I | ATGCAT | 2 cut(s) | 315, 960 |
| ErhI | CCWWGG | 1 cut(s) | 264 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1622, 1654 |
| FauNDI | CATATG | 1 cut(s) | 1666 |
| FblI | GTMKAC | 1 cut(s) | 1674 |
| Fnu4HI | GCNGC | 3 cut(s) | 360, 727, 933 |
| FokI | GGATG | 5 cut(s) | 41, 1130, 1472, 1622, 1784 |
| Fsp4HI | GCNGC | 3 cut(s) | 360, 727, 933 |
| FspBI | CTAG | 4 cut(s) | 123, 461, 492, 1353 |
| GluI | GCNGC | 3 cut(s) | 360, 727, 933 |
| GsaI | CCCAGC | 1 cut(s) | 9 |
| HaeIII | GGCC | 1 cut(s) | 1756 |
| HindIII | AAGCTT | 5 cut(s) | 158, 505, 557, 1065, 1598 |
| HinfI | GANTC | 9 cut(s) | 200, 215, 302, 322, 832, 1136, 1289, 1349, 1472 |
| HphI | GGTGA | 5 cut(s) | 628, 889, 980, 1213, 1250 |
| Hpy166II | GTNNAC | 4 cut(s) | 413, 697, 1588, 1675 |
| Hpy188I | TCNGA | 7 cut(s) | 301, 351, 517, 649, 1375, 1447, 1609 |
| Hpy188III | TCNNGA | 6 cut(s) | 319, 779, 1314, 1433, 1487, 1520 |
| Hpy8I | GTNNAC | 4 cut(s) | 413, 697, 1588, 1675 |
| HpyAV | CCTTC | 7 cut(s) | 144, 401, 800, 989, 1215, 1309, 1558 |
| HpyCH4III | ACNGT | 2 cut(s) | 734, 1717 |
| HpyCH4IV | ACGT | 1 cut(s) | 76 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 851, 1700 |
| HpyF3I | CTNAG | 8 cut(s) | 80, 156, 300, 486, 555, 780, 941, 1138 |
| HpySE526I | ACGT | 1 cut(s) | 76 |
| Kzo9I | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| Lsp1109I | GCAGC | 3 cut(s) | 371, 738, 919 |
| LweI | GCATC | 4 cut(s) | 322, 436, 945, 1339 |
| MaeI | CTAG | 4 cut(s) | 123, 461, 492, 1353 |
| MaeII | ACGT | 1 cut(s) | 76 |
| MaeIII | GTNAC | 3 cut(s) | 130, 998, 1469 |
| MalI | GATC | 6 cut(s) | 234, 396, 1152, 1215, 1318, 1449 |
| MboI | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| MflI | RGATCY | 1 cut(s) | 1213 |
| MluCI | AATT | 8 cut(s) | 101, 285, 292, 794, 926, 1174, 1193, 1548 |
| MlyI | GAGTC | 4 cut(s) | 194, 311, 1130, 1466 |
| MmeI | TCCRAC | 2 cut(s) | 724, 809 |
| Mph1103I | ATGCAT | 2 cut(s) | 315, 960 |
| MroXI | GAANNNNTTC | 2 cut(s) | 101, 603 |
| MseI | TTAA | 3 cut(s) | 509, 530, 917 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1608 |
| MspCI | CTTAAG | 1 cut(s) | 508 |
| MspR9I | CCNGG | 3 cut(s) | 655, 851, 987 |
| MvaI | CCWGG | 3 cut(s) | 655, 851, 987 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 851, 1700 |
| NcoI | CCATGG | 1 cut(s) | 264 |
| NdeI | CATATG | 1 cut(s) | 1666 |
| NdeII | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| NmuCI | GTSAC | 2 cut(s) | 998, 1469 |
| NsiI | ATGCAT | 2 cut(s) | 315, 960 |
| NspI | RCATGY | 1 cut(s) | 752 |
| NspV | TTCGAA | 2 cut(s) | 607, 1546 |
| PaeR7I | CTCGAG | 1 cut(s) | 363 |
| PagI | TCATGA | 1 cut(s) | 1519 |
| PciI | ACATGT | 1 cut(s) | 748 |
| PdmI | GAANNNNTTC | 2 cut(s) | 101, 603 |
| PfeI | GAWTC | 5 cut(s) | 215, 322, 832, 1289, 1349 |
| PkrI | GCNGC | 3 cut(s) | 361, 728, 934 |
| PleI | GAGTC | 4 cut(s) | 194, 310, 1130, 1466 |
| PpsI | GAGTC | 4 cut(s) | 194, 310, 1130, 1466 |
| PscI | ACATGT | 1 cut(s) | 748 |
| Psp6I | CCWGG | 3 cut(s) | 653, 849, 985 |
| PspFI | CCCAGC | 1 cut(s) | 5 |
| PspGI | CCWGG | 3 cut(s) | 653, 849, 985 |
| PspXI | VCTCGAGB | 1 cut(s) | 363 |
| PstNI | CAGNNNCTG | 2 cut(s) | 732, 1043 |
| PsuI | RGATCY | 1 cut(s) | 1213 |
| RsaI | GTAC | 3 cut(s) | 698, 1075, 1714 |
| RsaNI | GTAC | 3 cut(s) | 697, 1074, 1713 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1608 |
| SaqAI | TTAA | 3 cut(s) | 509, 530, 917 |
| SatI | GCNGC | 3 cut(s) | 360, 727, 933 |
| Sau3AI | GATC | 6 cut(s) | 232, 394, 1150, 1213, 1316, 1447 |
| SchI | GAGTC | 4 cut(s) | 194, 311, 1130, 1466 |
| ScrFI | CCNGG | 3 cut(s) | 655, 851, 987 |
| SfaNI | GCATC | 4 cut(s) | 322, 436, 945, 1339 |
| SfcI | CTRYAG | 1 cut(s) | 1569 |
| Sfr274I | CTCGAG | 1 cut(s) | 363 |
| SfuI | TTCGAA | 2 cut(s) | 607, 1546 |
| SlaI | CTCGAG | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1608 |
| SmlI | CTYRAG | 2 cut(s) | 363, 508 |
| SmoI | CTYRAG | 2 cut(s) | 363, 508 |
| Sse9I | AATT | 8 cut(s) | 101, 285, 292, 794, 926, 1174, 1193, 1548 |
| SspMI | CTAG | 4 cut(s) | 123, 461, 492, 1353 |
| StyD4I | CCNGG | 3 cut(s) | 653, 849, 985 |
| StyI | CCWWGG | 1 cut(s) | 264 |
| TaaI | ACNGT | 2 cut(s) | 734, 1717 |
| TaiI | ACGT | 1 cut(s) | 79 |
| TaqI | TCGA | 3 cut(s) | 364, 607, 1546 |
| TasI | AATT | 8 cut(s) | 101, 285, 292, 794, 926, 1174, 1193, 1548 |
| TatI | WGTACW | 2 cut(s) | 696, 1712 |
| TfiI | GAWTC | 5 cut(s) | 215, 322, 832, 1289, 1349 |
| Tru1I | TTAA | 3 cut(s) | 509, 530, 917 |
| Tru9I | TTAA | 3 cut(s) | 509, 530, 917 |
| TscAI | CASTG | 1 cut(s) | 1722 |
| TseFI | GTSAC | 2 cut(s) | 998, 1469 |
| TseI | GCWGC | 3 cut(s) | 359, 726, 932 |
| Tsp45I | GTSAC | 2 cut(s) | 998, 1469 |
| TspGWI | ACGGA | 1 cut(s) | 1163 |
| TspRI | CASTG | 1 cut(s) | 1722 |
| Vha464I | CTTAAG | 1 cut(s) | 508 |
| XapI | RAATTY | 6 cut(s) | 101, 285, 794, 926, 1174, 1548 |
| XceI | RCATGY | 1 cut(s) | 752 |
| XhoI | CTCGAG | 1 cut(s) | 363 |
| XmiI | GTMKAC | 1 cut(s) | 1674 |
| XmnI | GAANNNNTTC | 2 cut(s) | 101, 603 |
| XspI | CTAG | 4 cut(s) | 123, 461, 492, 1353 |
| Zsp2I | ATGCAT | 2 cut(s) | 315, 960 |