transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 644, 1583, 2685 |
| Acc36I | ACCTGC | 1 cut(s) | 2090 |
| AccB1I | GGYRCC | 1 cut(s) | 3372 |
| AccI | GTMKAC | 1 cut(s) | 3349 |
| AciI | CCGC | 3 cut(s) | 1917, 2375, 2783 |
| AclWI | GGATC | 3 cut(s) | 1522, 1535, 3620 |
| AcuI | CTGAAG | 3 cut(s) | 296, 2091, 2691 |
| AdeI | CACNNNGTG | 1 cut(s) | 2960 |
| AfaI | GTAC | 5 cut(s) | 497, 1118, 1234, 2571, 2668 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 2687, 3504 |
| AflII | CTTAAG | 2 cut(s) | 2392, 2977 |
| AhlI | ACTAGT | 1 cut(s) | 481 |
| AjiI | CACGTC | 1 cut(s) | 2256 |
| AjnI | CCWGG | 4 cut(s) | 105, 447, 508, 2968 |
| Alw26I | GTCTC | 4 cut(s) | 521, 2138, 2262, 2933 |
| AlwI | GGATC | 3 cut(s) | 1522, 1535, 3620 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2942 |
| Ama87I | CYCGRG | 1 cut(s) | 2739 |
| AoxI | GGCC | 4 cut(s) | 108, 681, 2539, 2696 |
| ApaI | GGGCCC | 1 cut(s) | 2543 |
| ApeKI | GCWGC | 6 cut(s) | 350, 411, 581, 974, 1091, 2804 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 602, 2156, 3528 |
| AspA2I | CCTAGG | 1 cut(s) | 3301 |
| AspLEI | GCGC | 2 cut(s) | 2245, 2612 |
| AspS9I | GGNCC | 7 cut(s) | 186, 248, 456, 2539, 2540, 3149, 3548 |
| AsuHPI | GGTGA | 6 cut(s) | 1451, 1513, 2065, 3244, 3281, 3380 |
| AsuII | TTCGAA | 1 cut(s) | 1361 |
| AsuNHI | GCTAGC | 2 cut(s) | 1102, 2377 |
| AvaI | CYCGRG | 1 cut(s) | 2739 |
| AvaII | GGWCC | 5 cut(s) | 186, 248, 456, 3149, 3548 |
| AvrII | CCTAGG | 1 cut(s) | 3301 |
| BaeGI | GKGCMC | 1 cut(s) | 2543 |
| BamHI | GGATCC | 1 cut(s) | 1527 |
| BanI | GGYRCC | 1 cut(s) | 3372 |
| BanII | GRGCYC | 1 cut(s) | 2543 |
| BbsI | GAAGAC | 3 cut(s) | 484, 663, 3266 |
| BbvCI | CCTCAGC | 1 cut(s) | 2502 |
| BbvI | GCAGC | 6 cut(s) | 362, 398, 568, 986, 1078, 2816 |
| BciT130I | CCWGG | 4 cut(s) | 107, 449, 510, 2970 |
| BcoDI | GTCTC | 4 cut(s) | 521, 2138, 2262, 2933 |
| BcuI | ACTAGT | 1 cut(s) | 481 |
| BfmI | CTRYAG | 1 cut(s) | 1296 |
| BfrI | CTTAAG | 2 cut(s) | 2392, 2977 |
| BfuAI | ACCTGC | 1 cut(s) | 2090 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 542 |
| BglII | AGATCT | 3 cut(s) | 2207, 2514, 2554 |
| BisI | GCNGC | 7 cut(s) | 351, 412, 582, 975, 1092, 2375, 2805 |
| BlnI | CCTAGG | 1 cut(s) | 3301 |
| BlpI | GCTNAGC | 1 cut(s) | 1709 |
| BlsI | GCNGC | 7 cut(s) | 352, 413, 583, 976, 1093, 2376, 2806 |
| Bme1390I | CCNGG | 4 cut(s) | 107, 449, 510, 2970 |
| Bme18I | GGWCC | 5 cut(s) | 186, 248, 456, 3149, 3548 |
| BmeT110I | CYCGRG | 1 cut(s) | 2739 |
| BmgBI | CACGTC | 1 cut(s) | 2256 |
| BmgT120I | GGNCC | 7 cut(s) | 186, 248, 456, 2539, 2540, 3149, 3548 |
| BmiI | GGNNCC | 9 cut(s) | 250, 457, 1529, 2104, 2541, 3151, 3184, 3374, 3549 |
| BmrFI | CCNGG | 4 cut(s) | 107, 449, 510, 2970 |
| BmrI | ACTGGG | 2 cut(s) | 1213, 1896 |
| BmsI | GCATC | 6 cut(s) | 791, 856, 897, 1414, 1551, 2713 |
| BmtI | GCTAGC | 2 cut(s) | 1106, 2381 |
| BmuI | ACTGGG | 2 cut(s) | 1213, 1896 |
| BpiI | GAAGAC | 3 cut(s) | 484, 663, 3266 |
| BpmI | CTGGAG | 2 cut(s) | 71, 947 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1842, 2502 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1709 |
| Bpu14I | TTCGAA | 1 cut(s) | 1361 |
| BpuEI | CTTGAG | 5 cut(s) | 353, 659, 1296, 1504, 3093 |
| Bsa29I | ATCGAT | 1 cut(s) | 785 |
| BsaJI | CCNNGG | 3 cut(s) | 509, 2171, 3301 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 763, 793, 1651, 1681 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 2687, 3504 |
| Bse1I | ACTGG | 5 cut(s) | 1150, 1208, 1902, 3345, 3551 |
| Bse3DI | GCAATG | 2 cut(s) | 1427, 2020 |
| BseBI | CCWGG | 4 cut(s) | 107, 449, 510, 2970 |
| BseCI | ATCGAT | 1 cut(s) | 785 |
| BseDI | CCNNGG | 3 cut(s) | 509, 2171, 3301 |
| BseGI | GGATG | 7 cut(s) | 457, 1971, 2761, 2779, 3494, 3604, 3697 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 2687, 3504 |
| BseMI | GCAATG | 2 cut(s) | 1427, 2020 |
| BseMII | CTCAG | 2 cut(s) | 1851, 2493 |
| BseNI | ACTGG | 5 cut(s) | 1150, 1208, 1902, 3345, 3551 |
| BseRI | GAGGAG | 1 cut(s) | 3213 |
| BseSI | GKGCMC | 1 cut(s) | 2543 |
| BseXI | GCAGC | 6 cut(s) | 362, 398, 568, 986, 1078, 2816 |
| BsgI | GTGCAG | 2 cut(s) | 397, 567 |
| BshFI | GGCC | 4 cut(s) | 110, 683, 2541, 2698 |
| BshNI | GGYRCC | 1 cut(s) | 3372 |
| BshVI | ATCGAT | 1 cut(s) | 785 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2739 |
| BslFI | GGGAC | 3 cut(s) | 234, 3135, 3561 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 2687, 3504 |
| BsmAI | GTCTC | 4 cut(s) | 521, 2138, 2262, 2933 |
| BsmBI | CGTCTC | 1 cut(s) | 2262 |
| BsmFI | GGGAC | 3 cut(s) | 234, 3135, 3561 |
| BsmI | GAATGC | 1 cut(s) | 1749 |
| BsnI | GGCC | 4 cut(s) | 110, 683, 2541, 2698 |
| BsoBI | CYCGRG | 1 cut(s) | 2739 |
| Bsp119I | TTCGAA | 1 cut(s) | 1361 |
| Bsp120I | GGGCCC | 1 cut(s) | 2539 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2543 |
| Bsp1407I | TGTACA | 1 cut(s) | 1116 |
| Bsp143I | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1709 |
| Bsp19I | CCATGG | 1 cut(s) | 2171 |
| BspACI | CCGC | 3 cut(s) | 1917, 2375, 2783 |
| BspANI | GGCC | 4 cut(s) | 110, 683, 2541, 2698 |
| BspCNI | CTCAG | 2 cut(s) | 1850, 2494 |
| BspDI | ATCGAT | 1 cut(s) | 785 |
| BspLI | GGNNCC | 9 cut(s) | 250, 457, 1529, 2104, 2541, 3151, 3184, 3374, 3549 |
| BspMI | ACCTGC | 1 cut(s) | 2090 |
| BspOI | GCTAGC | 2 cut(s) | 1106, 2381 |
| BspPI | GGATC | 3 cut(s) | 1522, 1535, 3620 |
| BspQI | GCTCTTC | 1 cut(s) | 401 |
| BspT104I | TTCGAA | 1 cut(s) | 1361 |
| BspT107I | GGYRCC | 1 cut(s) | 3372 |
| BspTI | CTTAAG | 2 cut(s) | 2392, 2977 |
| BsrDI | GCAATG | 2 cut(s) | 1427, 2020 |
| BsrGI | TGTACA | 1 cut(s) | 1116 |
| BsrI | ACTGG | 5 cut(s) | 1150, 1208, 1902, 3345, 3551 |
| BssECI | CCNNGG | 3 cut(s) | 509, 2171, 3301 |
| BssMI | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| BssNAI | GTATAC | 1 cut(s) | 3350 |
| BssT1I | CCWWGG | 2 cut(s) | 2171, 3301 |
| Bst1107I | GTATAC | 1 cut(s) | 3350 |
| Bst2UI | CCWGG | 4 cut(s) | 107, 449, 510, 2970 |
| Bst4CI | ACNGT | 4 cut(s) | 2720, 2867, 2948, 3078 |
| Bst6I | CTCTTC | 4 cut(s) | 381, 401, 1537, 1779 |
| BstAFI | CTTAAG | 2 cut(s) | 2392, 2977 |
| BstAUI | TGTACA | 1 cut(s) | 1116 |
| BstBI | TTCGAA | 1 cut(s) | 1361 |
| BstC8I | GCNNGC | 5 cut(s) | 303, 711, 1104, 1879, 2379 |
| BstDSI | CCRYGG | 1 cut(s) | 2171 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2685, 3502 |
| BstF5I | GGATG | 7 cut(s) | 457, 1971, 2761, 2779, 3494, 3604, 3697 |
| BstHHI | GCGC | 2 cut(s) | 2245, 2612 |
| BstKTI | GATC | 7 cut(s) | 1471, 1530, 2210, 2290, 2517, 2557, 3615 |
| BstMAI | GTCTC | 4 cut(s) | 521, 2138, 2262, 2933 |
| BstMBI | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 176, 542, 1301, 2096, 2240, 2249, 2801, 3002 |
| BstNI | CCWGG | 4 cut(s) | 107, 449, 510, 2970 |
| BstNSI | RCATGY | 3 cut(s) | 103, 305, 2249 |
| BstSCI | CCNGG | 4 cut(s) | 105, 447, 508, 2968 |
| BstSFI | CTRYAG | 1 cut(s) | 1296 |
| BstSLI | GKGCMC | 1 cut(s) | 2543 |
| BstV1I | GCAGC | 6 cut(s) | 362, 398, 568, 986, 1078, 2816 |
| BstV2I | GAAGAC | 3 cut(s) | 484, 663, 3266 |
| BstX2I | RGATCY | 4 cut(s) | 1527, 2207, 2514, 2554 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2420, 2807 |
| BstYI | RGATCY | 4 cut(s) | 1527, 2207, 2514, 2554 |
| BstZ17I | GTATAC | 1 cut(s) | 3350 |
| Bsu15I | ATCGAT | 1 cut(s) | 785 |
| BsuRI | GGCC | 4 cut(s) | 110, 683, 2541, 2698 |
| BsuTUI | ATCGAT | 1 cut(s) | 785 |
| BtgI | CCRYGG | 1 cut(s) | 2171 |
| BtrI | CACGTC | 1 cut(s) | 2256 |
| BtsCI | GGATG | 7 cut(s) | 457, 1971, 2761, 2779, 3494, 3604, 3697 |
| BtsI | GCAGTG | 1 cut(s) | 2901 |
| BtsIMutI | CAGTG | 3 cut(s) | 272, 2472, 2901 |
| BveI | ACCTGC | 1 cut(s) | 2090 |
| Cac8I | GCNNGC | 5 cut(s) | 303, 711, 1104, 1879, 2379 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2942 |
| CfoI | GCGC | 2 cut(s) | 2245, 2612 |
| Cfr13I | GGNCC | 7 cut(s) | 186, 248, 456, 2539, 2540, 3149, 3548 |
| ClaI | ATCGAT | 1 cut(s) | 785 |
| CseI | GACGC | 1 cut(s) | 2370 |
| Csp6I | GTAC | 5 cut(s) | 496, 1117, 1233, 2570, 2667 |
| CviQI | GTAC | 5 cut(s) | 496, 1117, 1233, 2570, 2667 |
| DpnI | GATC | 7 cut(s) | 1470, 1529, 2209, 2289, 2516, 2556, 3614 |
| DpnII | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| DraI | TTTAAA | 3 cut(s) | 3088, 3201, 3640 |
| DraIII | CACNNNGTG | 1 cut(s) | 2960 |
| Eam1104I | CTCTTC | 4 cut(s) | 381, 401, 1537, 1779 |
| EarI | CTCTTC | 4 cut(s) | 381, 401, 1537, 1779 |
| EciI | GGCGGA | 1 cut(s) | 1906 |
| Eco130I | CCWWGG | 2 cut(s) | 2171, 3301 |
| Eco147I | AGGCCT | 2 cut(s) | 683, 2698 |
| Eco24I | GRGCYC | 1 cut(s) | 2543 |
| Eco32I | GATATC | 2 cut(s) | 1081, 3247 |
| Eco47I | GGWCC | 5 cut(s) | 186, 248, 456, 3149, 3548 |
| Eco57I | CTGAAG | 3 cut(s) | 296, 2091, 2691 |
| Eco88I | CYCGRG | 1 cut(s) | 2739 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2685, 3502 |
| EcoO109I | RGGNCCY | 2 cut(s) | 248, 3149 |
| EcoRI | GAATTC | 3 cut(s) | 1589, 2002, 2156 |
| EcoRII | CCWGG | 4 cut(s) | 105, 447, 508, 2968 |
| EcoRV | GATATC | 2 cut(s) | 1081, 3247 |
| EcoT14I | CCWWGG | 2 cut(s) | 2171, 3301 |
| EcoT22I | ATGCAT | 3 cut(s) | 162, 1429, 1566 |
| EcoT38I | GRGCYC | 1 cut(s) | 2543 |
| ErhI | CCWWGG | 2 cut(s) | 2171, 3301 |
| Esp3I | CGTCTC | 1 cut(s) | 2262 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 668, 700, 1515, 1547, 3264, 3296, 3601, 3633 |
| FaqI | GGGAC | 3 cut(s) | 234, 3135, 3561 |
| FauNDI | CATATG | 3 cut(s) | 1156, 1960, 3054 |
| FblI | GTMKAC | 1 cut(s) | 3349 |
| Fnu4HI | GCNGC | 7 cut(s) | 351, 412, 582, 975, 1092, 2375, 2805 |
| FokI | GGATG | 7 cut(s) | 464, 1958, 2748, 2766, 3481, 3611, 3684 |
| FriOI | GRGCYC | 1 cut(s) | 2543 |
| Fsp4HI | GCNGC | 7 cut(s) | 351, 412, 582, 975, 1092, 2375, 2805 |
| GlaI | GCGC | 2 cut(s) | 2244, 2611 |
| GluI | GCNGC | 7 cut(s) | 351, 412, 582, 975, 1092, 2375, 2805 |
| GsuI | CTGGAG | 2 cut(s) | 71, 947 |
| HaeIII | GGCC | 4 cut(s) | 110, 683, 2541, 2698 |
| HgaI | GACGC | 1 cut(s) | 2370 |
| HhaI | GCGC | 2 cut(s) | 2245, 2612 |
| Hin6I | GCGC | 2 cut(s) | 2243, 2610 |
| HinP1I | GCGC | 2 cut(s) | 2243, 2610 |
| HindIII | AAGCTT | 5 cut(s) | 1491, 2213, 2533, 2643, 2980 |
| HphI | GGTGA | 6 cut(s) | 1451, 1513, 2065, 3244, 3281, 3380 |
| Hpy166II | GTNNAC | 3 cut(s) | 667, 1514, 3350 |
| Hpy8I | GTNNAC | 3 cut(s) | 667, 1514, 3350 |
| Hpy99I | CGWCG | 1 cut(s) | 2111 |
| HpyAV | CCTTC | 6 cut(s) | 673, 1222, 1517, 3163, 3266, 3402 |
| HpyCH4III | ACNGT | 4 cut(s) | 2720, 2867, 2948, 3078 |
| HpyCH4IV | ACGT | 3 cut(s) | 2109, 2255, 3448 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 176, 542, 1301, 2096, 2240, 2249, 2801, 3002 |
| HpySE526I | ACGT | 3 cut(s) | 2109, 2255, 3448 |
| HspAI | GCGC | 2 cut(s) | 2243, 2610 |
| Kzo9I | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| LguI | GCTCTTC | 1 cut(s) | 401 |
| LmnI | GCTCC | 4 cut(s) | 155, 235, 1913, 2323 |
| Lsp1109I | GCAGC | 6 cut(s) | 362, 398, 568, 986, 1078, 2816 |
| LweI | GCATC | 6 cut(s) | 791, 856, 897, 1414, 1551, 2713 |
| MaeII | ACGT | 3 cut(s) | 2109, 2255, 3448 |
| MaeIII | GTNAC | 6 cut(s) | 1199, 1954, 2307, 2479, 3458, 3586 |
| MalI | GATC | 7 cut(s) | 1470, 1529, 2209, 2289, 2516, 2556, 3614 |
| MboI | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| MfeI | CAATTG | 2 cut(s) | 2291, 3141 |
| MflI | RGATCY | 4 cut(s) | 1527, 2207, 2514, 2554 |
| MhlI | GDGCHC | 1 cut(s) | 2543 |
| MlyI | GAGTC | 4 cut(s) | 13, 371, 2279, 3569 |
| MmeI | TCCRAC | 6 cut(s) | 631, 810, 2130, 2437, 2732, 3160 |
| Mph1103I | ATGCAT | 3 cut(s) | 162, 1429, 1566 |
| MroXI | GAANNNNTTC | 3 cut(s) | 602, 2156, 3528 |
| MslI | CAYNNNNRTG | 5 cut(s) | 225, 1610, 1933, 2278, 2603 |
| MspA1I | CMGCKG | 1 cut(s) | 2807 |
| MspCI | CTTAAG | 2 cut(s) | 2392, 2977 |
| MspR9I | CCNGG | 4 cut(s) | 107, 449, 510, 2970 |
| MunI | CAATTG | 2 cut(s) | 2291, 3141 |
| Mva1269I | GAATGC | 1 cut(s) | 1749 |
| MvaI | CCWGG | 4 cut(s) | 107, 449, 510, 2970 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 176, 542, 1301, 2096, 2240, 2249, 2801, 3002 |
| NcoI | CCATGG | 1 cut(s) | 2171 |
| NdeI | CATATG | 3 cut(s) | 1156, 1960, 3054 |
| NdeII | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| NheI | GCTAGC | 2 cut(s) | 1102, 2377 |
| NlaIV | GGNNCC | 9 cut(s) | 250, 457, 1529, 2104, 2541, 3151, 3184, 3374, 3549 |
| NmuCI | GTSAC | 2 cut(s) | 1199, 3458 |
| NsiI | ATGCAT | 3 cut(s) | 162, 1429, 1566 |
| NspI | RCATGY | 3 cut(s) | 103, 305, 2249 |
| NspV | TTCGAA | 1 cut(s) | 1361 |
| PaeI | GCATGC | 1 cut(s) | 305 |
| PaeR7I | CTCGAG | 1 cut(s) | 2739 |
| PceI | AGGCCT | 2 cut(s) | 683, 2698 |
| PciSI | GCTCTTC | 1 cut(s) | 401 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2378 |
| PctI | GAATGC | 1 cut(s) | 1749 |
| PdmI | GAANNNNTTC | 3 cut(s) | 602, 2156, 3528 |
| PfeI | GAWTC | 6 cut(s) | 1675, 2361, 2755, 2776, 3442, 3491 |
| PkrI | GCNGC | 7 cut(s) | 352, 413, 583, 976, 1093, 2376, 2806 |
| PleI | GAGTC | 4 cut(s) | 12, 370, 2278, 3568 |
| PpsI | GAGTC | 4 cut(s) | 12, 370, 2278, 3568 |
| PpuMI | RGGWCCY | 2 cut(s) | 248, 3149 |
| PsiI | TTATAA | 3 cut(s) | 644, 1583, 2685 |
| Psp5II | RGGWCCY | 2 cut(s) | 248, 3149 |
| Psp6I | CCWGG | 4 cut(s) | 105, 447, 508, 2968 |
| PspGI | CCWGG | 4 cut(s) | 105, 447, 508, 2968 |
| PspN4I | GGNNCC | 9 cut(s) | 250, 457, 1529, 2104, 2541, 3151, 3184, 3374, 3549 |
| PspOMI | GGGCCC | 1 cut(s) | 2539 |
| PspPI | GGNCC | 7 cut(s) | 186, 248, 456, 2539, 2540, 3149, 3548 |
| PspPPI | RGGWCCY | 2 cut(s) | 248, 3149 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2942 |
| PsuI | RGATCY | 4 cut(s) | 1527, 2207, 2514, 2554 |
| PvuII | CAGCTG | 1 cut(s) | 2807 |
| RsaI | GTAC | 5 cut(s) | 497, 1118, 1234, 2571, 2668 |
| RsaNI | GTAC | 5 cut(s) | 496, 1117, 1233, 2570, 2667 |
| RseI | CAYNNNNRTG | 5 cut(s) | 225, 1610, 1933, 2278, 2603 |
| SapI | GCTCTTC | 1 cut(s) | 401 |
| SatI | GCNGC | 7 cut(s) | 351, 412, 582, 975, 1092, 2375, 2805 |
| Sau3AI | GATC | 7 cut(s) | 1468, 1527, 2207, 2287, 2514, 2554, 3612 |
| Sau96I | GGNCC | 7 cut(s) | 186, 248, 456, 2539, 2540, 3149, 3548 |
| SchI | GAGTC | 4 cut(s) | 13, 371, 2279, 3569 |
| ScrFI | CCNGG | 4 cut(s) | 107, 449, 510, 2970 |
| SduI | GDGCHC | 1 cut(s) | 2543 |
| SfaNI | GCATC | 6 cut(s) | 791, 856, 897, 1414, 1551, 2713 |
| SfcI | CTRYAG | 1 cut(s) | 1296 |
| Sfr274I | CTCGAG | 1 cut(s) | 2739 |
| SfuI | TTCGAA | 1 cut(s) | 1361 |
| SinI | GGWCC | 5 cut(s) | 186, 248, 456, 3149, 3548 |
| SlaI | CTCGAG | 1 cut(s) | 2739 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 225, 1610, 1933, 2278, 2603 |
| SmlI | CTYRAG | 8 cut(s) | 332, 674, 1311, 1483, 2392, 2739, 2977, 3108 |
| SmoI | CTYRAG | 8 cut(s) | 332, 674, 1311, 1483, 2392, 2739, 2977, 3108 |
| SpeI | ACTAGT | 1 cut(s) | 481 |
| SphI | GCATGC | 1 cut(s) | 305 |
| SseBI | AGGCCT | 2 cut(s) | 683, 2698 |
| SsiI | CCGC | 3 cut(s) | 1917, 2375, 2783 |
| SspI | AATATT | 1 cut(s) | 1446 |
| StuI | AGGCCT | 2 cut(s) | 683, 2698 |
| StyD4I | CCNGG | 4 cut(s) | 105, 447, 508, 2968 |
| StyI | CCWWGG | 2 cut(s) | 2171, 3301 |
| TaaI | ACNGT | 4 cut(s) | 2720, 2867, 2948, 3078 |
| TaiI | ACGT | 3 cut(s) | 2112, 2258, 3451 |
| TaqI | TCGA | 6 cut(s) | 516, 785, 1361, 2268, 2461, 2740 |
| TatI | WGTACW | 2 cut(s) | 1116, 2569 |
| TauI | GCSGC | 1 cut(s) | 2377 |
| TfiI | GAWTC | 6 cut(s) | 1675, 2361, 2755, 2776, 3442, 3491 |
| TscAI | CASTG | 3 cut(s) | 279, 2479, 2908 |
| TseFI | GTSAC | 2 cut(s) | 1199, 3458 |
| TseI | GCWGC | 6 cut(s) | 350, 411, 581, 974, 1091, 2804 |
| Tsp45I | GTSAC | 2 cut(s) | 1199, 3458 |
| TspGWI | ACGGA | 1 cut(s) | 1601 |
| TspRI | CASTG | 3 cut(s) | 279, 2479, 2908 |
| Vha464I | CTTAAG | 2 cut(s) | 2392, 2977 |
| VpaK11BI | GGWCC | 5 cut(s) | 186, 248, 456, 3149, 3548 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2685, 3502 |
| XbaI | TCTAGA | 1 cut(s) | 1262 |
| XceI | RCATGY | 3 cut(s) | 103, 305, 2249 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3679 |
| XhoI | CTCGAG | 1 cut(s) | 2739 |
| XmaJI | CCTAGG | 1 cut(s) | 3301 |
| XmiI | GTMKAC | 1 cut(s) | 3349 |
| XmnI | GAANNNNTTC | 3 cut(s) | 602, 2156, 3528 |
| Zsp2I | ATGCAT | 3 cut(s) | 162, 1429, 1566 |