transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 643 |
| Acc36I | ACCTGC | 2 cut(s) | 374, 643 |
| AccB1I | GGYRCC | 1 cut(s) | 2011 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 421 |
| AciI | CCGC | 2 cut(s) | 350, 1056 |
| AclWI | GGATC | 4 cut(s) | 1415, 1625, 1907, 2076 |
| AcsI | RAATTY | 5 cut(s) | 92, 1070, 1502, 1526, 1598 |
| AcuI | CTGAAG | 3 cut(s) | 515, 699, 1641 |
| AdeI | CACNNNGTG | 1 cut(s) | 1256 |
| AfaI | GTAC | 5 cut(s) | 461, 710, 1126, 1665, 1780 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 421 |
| AflIII | ACRYGT | 2 cut(s) | 327, 1775 |
| AjnI | CCWGG | 2 cut(s) | 239, 1120 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1215, 1247 |
| Alw21I | GWGCWC | 1 cut(s) | 1984 |
| Alw26I | GTCTC | 7 cut(s) | 43, 117, 653, 849, 1404, 1870, 2073 |
| AlwI | GGATC | 4 cut(s) | 1415, 1625, 1907, 2076 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 421 |
| AoxI | GGCC | 3 cut(s) | 464, 843, 906 |
| ApeKI | GCWGC | 3 cut(s) | 672, 992, 1958 |
| ApoI | RAATTY | 5 cut(s) | 92, 1070, 1502, 1526, 1598 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 392, 396, 424, 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1935 |
| AspS9I | GGNCC | 1 cut(s) | 1738 |
| AsuHPI | GGTGA | 6 cut(s) | 181, 186, 1308, 1349, 1607, 1640 |
| AvaII | GGWCC | 1 cut(s) | 1738 |
| BanI | GGYRCC | 1 cut(s) | 2011 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 743, 775 |
| BauI | CACGAG | 4 cut(s) | 114, 354, 1389, 1515 |
| BbsI | GAAGAC | 3 cut(s) | 561, 1119, 1234 |
| Bbv12I | GWGCWC | 1 cut(s) | 1984 |
| BbvI | GCAGC | 3 cut(s) | 684, 1004, 1945 |
| BccI | CCATC | 2 cut(s) | 1037, 2059 |
| BciT130I | CCWGG | 2 cut(s) | 241, 1122 |
| BclI | TGATCA | 1 cut(s) | 892 |
| BcoDI | GTCTC | 7 cut(s) | 43, 117, 653, 849, 1404, 1870, 2073 |
| BfaI | CTAG | 9 cut(s) | 134, 684, 773, 914, 1158, 1293, 1754, 1761, 1827 |
| BfmI | CTRYAG | 1 cut(s) | 474 |
| BfuAI | ACCTGC | 2 cut(s) | 374, 643 |
| BglII | AGATCT | 1 cut(s) | 944 |
| BisI | GCNGC | 4 cut(s) | 351, 673, 993, 1959 |
| BlpI | GCTNAGC | 1 cut(s) | 152 |
| BlsI | GCNGC | 4 cut(s) | 352, 674, 994, 1960 |
| Bme1390I | CCNGG | 2 cut(s) | 241, 1122 |
| Bme18I | GGWCC | 1 cut(s) | 1738 |
| BmgT120I | GGNCC | 1 cut(s) | 1738 |
| BmiI | GGNNCC | 2 cut(s) | 261, 2013 |
| BmrFI | CCNGG | 2 cut(s) | 241, 1122 |
| BmsI | GCATC | 5 cut(s) | 427, 469, 639, 814, 1023 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1820 |
| BpiI | GAAGAC | 3 cut(s) | 561, 1119, 1234 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 23, 55 |
| BpmI | CTGGAG | 2 cut(s) | 331, 735 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 152 |
| BpuEI | CTTGAG | 3 cut(s) | 580, 586, 1346 |
| BsaAI | YACGTR | 1 cut(s) | 1778 |
| BsaI | GGTCTC | 2 cut(s) | 117, 653 |
| BsaJI | CCNNGG | 7 cut(s) | 42, 107, 126, 538, 766, 1319, 1425 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 421 |
| Bse1I | ACTGG | 1 cut(s) | 752 |
| BseBI | CCWGG | 2 cut(s) | 241, 1122 |
| BseDI | CCNNGG | 7 cut(s) | 42, 107, 126, 538, 766, 1319, 1425 |
| BseGI | GGATG | 3 cut(s) | 296, 805, 1831 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 421 |
| BseMII | CTCAG | 8 cut(s) | 21, 143, 264, 1014, 1478, 1903, 1938, 1990 |
| BseNI | ACTGG | 1 cut(s) | 752 |
| BseRI | GAGGAG | 1 cut(s) | 577 |
| BseXI | GCAGC | 3 cut(s) | 684, 1004, 1945 |
| BseYI | CCCAGC | 1 cut(s) | 668 |
| BshFI | GGCC | 3 cut(s) | 466, 845, 908 |
| BshNI | GGYRCC | 1 cut(s) | 2011 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1984 |
| BslFI | GGGAC | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 421 |
| BsmAI | GTCTC | 7 cut(s) | 43, 117, 653, 849, 1404, 1870, 2073 |
| BsmBI | CGTCTC | 1 cut(s) | 2073 |
| BsmFI | GGGAC | 1 cut(s) | 413 |
| BsnI | GGCC | 3 cut(s) | 466, 845, 908 |
| Bso31I | GGTCTC | 2 cut(s) | 117, 653 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1984 |
| Bsp1407I | TGTACA | 1 cut(s) | 459 |
| Bsp143I | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 152 |
| Bsp19I | CCATGG | 1 cut(s) | 107 |
| BspACI | CCGC | 2 cut(s) | 350, 1056 |
| BspANI | GGCC | 3 cut(s) | 466, 845, 908 |
| BspCNI | CTCAG | 8 cut(s) | 22, 144, 265, 1015, 1477, 1902, 1939, 1989 |
| BspLI | GGNNCC | 2 cut(s) | 261, 2013 |
| BspMI | ACCTGC | 2 cut(s) | 374, 643 |
| BspPI | GGATC | 4 cut(s) | 1415, 1625, 1907, 2076 |
| BspQI | GCTCTTC | 1 cut(s) | 1941 |
| BspT107I | GGYRCC | 1 cut(s) | 2011 |
| BspTNI | GGTCTC | 2 cut(s) | 117, 653 |
| BsrGI | TGTACA | 1 cut(s) | 459 |
| BsrI | ACTGG | 1 cut(s) | 752 |
| BssECI | CCNNGG | 7 cut(s) | 42, 107, 126, 538, 766, 1319, 1425 |
| BssMI | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| BssSI | CACGAG | 4 cut(s) | 114, 354, 1389, 1515 |
| BssT1I | CCWWGG | 6 cut(s) | 107, 126, 538, 766, 1319, 1425 |
| Bst2BI | CACGAG | 4 cut(s) | 114, 354, 1389, 1515 |
| Bst2UI | CCWGG | 2 cut(s) | 241, 1122 |
| Bst6I | CTCTTC | 6 cut(s) | 491, 495, 624, 853, 1941, 2022 |
| BstAUI | TGTACA | 1 cut(s) | 459 |
| BstBAI | YACGTR | 1 cut(s) | 1778 |
| BstC8I | GCNNGC | 3 cut(s) | 535, 1078, 1708 |
| BstDSI | CCRYGG | 2 cut(s) | 42, 107 |
| BstF5I | GGATG | 3 cut(s) | 296, 805, 1831 |
| BstKTI | GATC | 9 cut(s) | 146, 895, 947, 1211, 1423, 1633, 1735, 1915, 2071 |
| BstMAI | GTCTC | 7 cut(s) | 43, 117, 653, 849, 1404, 1870, 2073 |
| BstMBI | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 811, 914, 1154 |
| BstNI | CCWGG | 2 cut(s) | 241, 1122 |
| BstNSI | RCATGY | 2 cut(s) | 331, 1136 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1820 |
| BstSCI | CCNGG | 2 cut(s) | 239, 1120 |
| BstSFI | CTRYAG | 1 cut(s) | 474 |
| BstV1I | GCAGC | 3 cut(s) | 684, 1004, 1945 |
| BstV2I | GAAGAC | 3 cut(s) | 561, 1119, 1234 |
| BstX2I | RGATCY | 1 cut(s) | 944 |
| BstYI | RGATCY | 1 cut(s) | 944 |
| BsuRI | GGCC | 3 cut(s) | 466, 845, 908 |
| BtgI | CCRYGG | 2 cut(s) | 42, 107 |
| BtsCI | GGATG | 3 cut(s) | 296, 805, 1831 |
| BtsI | GCAGTG | 1 cut(s) | 702 |
| BtsIMutI | CAGTG | 3 cut(s) | 324, 702, 1038 |
| BveI | ACCTGC | 2 cut(s) | 374, 643 |
| Cac8I | GCNNGC | 3 cut(s) | 535, 1078, 1708 |
| CaiI | CAGNNNCTG | 1 cut(s) | 421 |
| Cfr13I | GGNCC | 1 cut(s) | 1738 |
| CseI | GACGC | 2 cut(s) | 1773, 2090 |
| CsiI | ACCWGGT | 1 cut(s) | 1120 |
| Csp6I | GTAC | 5 cut(s) | 460, 709, 1125, 1664, 1779 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2017, 2052 |
| CviAII | CATG | 4 cut(s) | 108, 328, 439, 1133 |
| CviQI | GTAC | 5 cut(s) | 460, 709, 1125, 1664, 1779 |
| DpnI | GATC | 9 cut(s) | 145, 894, 946, 1210, 1422, 1632, 1734, 1914, 2070 |
| DpnII | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| DraIII | CACNNNGTG | 1 cut(s) | 1256 |
| Eam1104I | CTCTTC | 6 cut(s) | 491, 495, 624, 853, 1941, 2022 |
| EarI | CTCTTC | 6 cut(s) | 491, 495, 624, 853, 1941, 2022 |
| Eco130I | CCWWGG | 6 cut(s) | 107, 126, 538, 766, 1319, 1425 |
| Eco147I | AGGCCT | 1 cut(s) | 845 |
| Eco31I | GGTCTC | 2 cut(s) | 117, 653 |
| Eco32I | GATATC | 1 cut(s) | 187 |
| Eco47I | GGWCC | 1 cut(s) | 1738 |
| Eco57I | CTGAAG | 3 cut(s) | 515, 699, 1641 |
| EcoRI | GAATTC | 1 cut(s) | 92 |
| EcoRII | CCWGG | 2 cut(s) | 239, 1120 |
| EcoRV | GATATC | 1 cut(s) | 187 |
| EcoT14I | CCWWGG | 6 cut(s) | 107, 126, 538, 766, 1319, 1425 |
| ErhI | CCWWGG | 6 cut(s) | 107, 126, 538, 766, 1319, 1425 |
| Esp3I | CGTCTC | 1 cut(s) | 2073 |
| FaeI | CATG | 4 cut(s) | 111, 331, 442, 1136 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 140, 172, 213, 245, 1245, 1277 |
| FaqI | GGGAC | 1 cut(s) | 413 |
| FatI | CATG | 4 cut(s) | 107, 327, 438, 1132 |
| FbaI | TGATCA | 1 cut(s) | 892 |
| Fnu4HI | GCNGC | 4 cut(s) | 351, 673, 993, 1959 |
| FokI | GGATG | 3 cut(s) | 283, 792, 1818 |
| Fsp4HI | GCNGC | 4 cut(s) | 351, 673, 993, 1959 |
| FspBI | CTAG | 9 cut(s) | 134, 684, 773, 914, 1158, 1293, 1754, 1761, 1827 |
| GluI | GCNGC | 4 cut(s) | 351, 673, 993, 1959 |
| GsaI | CCCAGC | 1 cut(s) | 672 |
| GsuI | CTGGAG | 2 cut(s) | 331, 735 |
| HaeIII | GGCC | 3 cut(s) | 466, 845, 908 |
| HgaI | GACGC | 2 cut(s) | 1773, 2090 |
| Hin1II | CATG | 4 cut(s) | 111, 331, 442, 1136 |
| HindIII | AAGCTT | 4 cut(s) | 169, 207, 1704, 1881 |
| HinfI | GANTC | 5 cut(s) | 55, 293, 565, 700, 1091 |
| HphI | GGTGA | 6 cut(s) | 181, 186, 1308, 1349, 1607, 1640 |
| Hpy166II | GTNNAC | 1 cut(s) | 869 |
| Hpy8I | GTNNAC | 1 cut(s) | 869 |
| HpyAV | CCTTC | 3 cut(s) | 1006, 1147, 1462 |
| HpyCH4IV | ACGT | 1 cut(s) | 1777 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 811, 914, 1154 |
| HpySE526I | ACGT | 1 cut(s) | 1777 |
| Hsp92II | CATG | 4 cut(s) | 111, 331, 442, 1136 |
| Ksp22I | TGATCA | 1 cut(s) | 892 |
| Kzo9I | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| LguI | GCTCTTC | 1 cut(s) | 1941 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| Lsp1109I | GCAGC | 3 cut(s) | 684, 1004, 1945 |
| LweI | GCATC | 5 cut(s) | 427, 469, 639, 814, 1023 |
| MabI | ACCWGGT | 1 cut(s) | 1120 |
| MaeI | CTAG | 9 cut(s) | 134, 684, 773, 914, 1158, 1293, 1754, 1761, 1827 |
| MaeII | ACGT | 1 cut(s) | 1777 |
| MaeIII | GTNAC | 9 cut(s) | 121, 284, 725, 1016, 1248, 1813, 1822, 1874, 1892 |
| MalI | GATC | 9 cut(s) | 145, 894, 946, 1210, 1422, 1632, 1734, 1914, 2070 |
| MboI | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| MfeI | CAATTG | 2 cut(s) | 1617, 2072 |
| MflI | RGATCY | 1 cut(s) | 944 |
| MhlI | GDGCHC | 1 cut(s) | 1984 |
| MlyI | GAGTC | 2 cut(s) | 302, 574 |
| MmeI | TCCRAC | 1 cut(s) | 776 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1935 |
| MseI | TTAA | 4 cut(s) | 575, 782, 981, 1524 |
| MspR9I | CCNGG | 2 cut(s) | 241, 1122 |
| MunI | CAATTG | 2 cut(s) | 1617, 2072 |
| MvaI | CCWGG | 2 cut(s) | 241, 1122 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 811, 914, 1154 |
| NcoI | CCATGG | 1 cut(s) | 107 |
| NdeII | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| NlaIII | CATG | 4 cut(s) | 111, 331, 442, 1136 |
| NlaIV | GGNNCC | 2 cut(s) | 261, 2013 |
| NmeAIII | GCCGAG | 1 cut(s) | 1198 |
| NmuCI | GTSAC | 5 cut(s) | 1248, 1813, 1822, 1874, 1892 |
| NspI | RCATGY | 2 cut(s) | 331, 1136 |
| PaqCI | CACCTGC | 1 cut(s) | 643 |
| PceI | AGGCCT | 1 cut(s) | 845 |
| PciI | ACATGT | 1 cut(s) | 327 |
| PciSI | GCTCTTC | 1 cut(s) | 1941 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1935 |
| PfeI | GAWTC | 3 cut(s) | 55, 700, 1091 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 421 |
| PkrI | GCNGC | 4 cut(s) | 352, 674, 994, 1960 |
| PleI | GAGTC | 2 cut(s) | 301, 573 |
| PpsI | GAGTC | 2 cut(s) | 301, 573 |
| Ppu21I | YACGTR | 1 cut(s) | 1778 |
| PscI | ACATGT | 1 cut(s) | 327 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1820 |
| Psp6I | CCWGG | 2 cut(s) | 239, 1120 |
| PspFI | CCCAGC | 1 cut(s) | 668 |
| PspGI | CCWGG | 2 cut(s) | 239, 1120 |
| PspN4I | GGNNCC | 2 cut(s) | 261, 2013 |
| PspPI | GGNCC | 1 cut(s) | 1738 |
| PstNI | CAGNNNCTG | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 944 |
| RsaI | GTAC | 5 cut(s) | 461, 710, 1126, 1665, 1780 |
| RsaNI | GTAC | 5 cut(s) | 460, 709, 1125, 1664, 1779 |
| SapI | GCTCTTC | 1 cut(s) | 1941 |
| SaqAI | TTAA | 4 cut(s) | 575, 782, 981, 1524 |
| SatI | GCNGC | 4 cut(s) | 351, 673, 993, 1959 |
| Sau3AI | GATC | 9 cut(s) | 143, 892, 944, 1208, 1420, 1630, 1732, 1912, 2068 |
| Sau96I | GGNCC | 1 cut(s) | 1738 |
| SchI | GAGTC | 2 cut(s) | 302, 574 |
| ScrFI | CCNGG | 2 cut(s) | 241, 1122 |
| SduI | GDGCHC | 1 cut(s) | 1984 |
| SexAI | ACCWGGT | 1 cut(s) | 1120 |
| SfaNI | GCATC | 5 cut(s) | 427, 469, 639, 814, 1023 |
| SfcI | CTRYAG | 1 cut(s) | 474 |
| SinI | GGWCC | 1 cut(s) | 1738 |
| SmlI | CTYRAG | 3 cut(s) | 559, 601, 1361 |
| SmoI | CTYRAG | 3 cut(s) | 559, 601, 1361 |
| SseBI | AGGCCT | 1 cut(s) | 845 |
| SsiI | CCGC | 2 cut(s) | 350, 1056 |
| SspMI | CTAG | 9 cut(s) | 134, 684, 773, 914, 1158, 1293, 1754, 1761, 1827 |
| StuI | AGGCCT | 1 cut(s) | 845 |
| StyD4I | CCNGG | 2 cut(s) | 239, 1120 |
| StyI | CCWWGG | 6 cut(s) | 107, 126, 538, 766, 1319, 1425 |
| TaiI | ACGT | 1 cut(s) | 1780 |
| TaqI | TCGA | 1 cut(s) | 1207 |
| TatI | WGTACW | 1 cut(s) | 459 |
| TauI | GCSGC | 1 cut(s) | 353 |
| TfiI | GAWTC | 3 cut(s) | 55, 700, 1091 |
| Tru1I | TTAA | 4 cut(s) | 575, 782, 981, 1524 |
| Tru9I | TTAA | 4 cut(s) | 575, 782, 981, 1524 |
| TscAI | CASTG | 3 cut(s) | 324, 702, 1045 |
| TseFI | GTSAC | 5 cut(s) | 1248, 1813, 1822, 1874, 1892 |
| TseI | GCWGC | 3 cut(s) | 672, 992, 1958 |
| Tsp45I | GTSAC | 5 cut(s) | 1248, 1813, 1822, 1874, 1892 |
| TspDTI | ATGAA | 9 cut(s) | 105, 148, 219, 462, 567, 593, 1241, 1736, 1986 |
| TspGWI | ACGGA | 1 cut(s) | 31 |
| TspRI | CASTG | 3 cut(s) | 324, 702, 1045 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 421 |
| VpaK11BI | GGWCC | 1 cut(s) | 1738 |
| XapI | RAATTY | 5 cut(s) | 92, 1070, 1502, 1526, 1598 |
| XceI | RCATGY | 2 cut(s) | 331, 1136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1935 |
| XspI | CTAG | 9 cut(s) | 134, 684, 773, 914, 1158, 1293, 1754, 1761, 1827 |