gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 632 |
| AclWI | GGATC | 3 cut(s) | 378, 676, 1063 |
| AcsI | RAATTY | 1 cut(s) | 1001 |
| AcuI | CTGAAG | 1 cut(s) | 519 |
| AfaI | GTAC | 2 cut(s) | 722, 775 |
| AflIII | ACRYGT | 1 cut(s) | 321 |
| AgsI | TTSAA | 9 cut(s) | 94, 249, 386, 410, 490, 518, 542, 617, 941 |
| AjnI | CCWGG | 2 cut(s) | 129, 1051 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 881, 913 |
| AluBI | AGCT | 7 cut(s) | 148, 153, 262, 279, 497, 662, 677 |
| AluI | AGCT | 7 cut(s) | 148, 153, 262, 279, 497, 662, 677 |
| AlwI | GGATC | 3 cut(s) | 378, 676, 1063 |
| AoxI | GGCC | 1 cut(s) | 734 |
| ApeKI | GCWGC | 1 cut(s) | 689 |
| ApoI | RAATTY | 1 cut(s) | 1001 |
| AseI | ATTAAT | 1 cut(s) | 243 |
| AspLEI | GCGC | 2 cut(s) | 116, 633 |
| AsuHPI | GGTGA | 1 cut(s) | 652 |
| BanII | GRGCYC | 1 cut(s) | 578 |
| BbvI | GCAGC | 1 cut(s) | 676 |
| BccI | CCATC | 1 cut(s) | 125 |
| BciT130I | CCWGG | 2 cut(s) | 131, 1053 |
| BfaI | CTAG | 3 cut(s) | 125, 335, 678 |
| BfmI | CTRYAG | 1 cut(s) | 1038 |
| BfoI | RGCGCY | 1 cut(s) | 117 |
| BglII | AGATCT | 1 cut(s) | 550 |
| BisI | GCNGC | 1 cut(s) | 690 |
| BlpI | GCTNAGC | 1 cut(s) | 149 |
| BlsI | GCNGC | 1 cut(s) | 691 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 1053 |
| BmiI | GGNNCC | 1 cut(s) | 255 |
| BmrFI | CCNGG | 2 cut(s) | 131, 1053 |
| BmsI | GCATC | 2 cut(s) | 298, 823 |
| BpmI | CTGGAG | 1 cut(s) | 684 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 149 |
| BsaBI | GATNNNNATC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 3 cut(s) | 129, 130, 1051 |
| Bse1I | ACTGG | 1 cut(s) | 781 |
| Bse3DI | GCAATG | 1 cut(s) | 973 |
| Bse8I | GATNNNNATC | 1 cut(s) | 51 |
| BseBI | CCWGG | 2 cut(s) | 131, 1053 |
| BseDI | CCNNGG | 3 cut(s) | 129, 130, 1051 |
| BseGI | GGATG | 5 cut(s) | 171, 185, 313, 814, 896 |
| BseJI | GATNNNNATC | 1 cut(s) | 51 |
| BseMI | GCAATG | 1 cut(s) | 973 |
| BseMII | CTCAG | 3 cut(s) | 87, 163, 570 |
| BseNI | ACTGG | 1 cut(s) | 781 |
| BseXI | GCAGC | 1 cut(s) | 676 |
| BshFI | GGCC | 1 cut(s) | 736 |
| BsmI | GAATGC | 1 cut(s) | 767 |
| BsnI | GGCC | 1 cut(s) | 736 |
| Bsp1286I | GDGCHC | 1 cut(s) | 578 |
| Bsp143I | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 149 |
| BspANI | GGCC | 1 cut(s) | 736 |
| BspCNI | CTCAG | 3 cut(s) | 86, 162, 571 |
| BspLI | GGNNCC | 1 cut(s) | 255 |
| BspPI | GGATC | 3 cut(s) | 378, 676, 1063 |
| BsrDI | GCAATG | 1 cut(s) | 973 |
| BsrI | ACTGG | 1 cut(s) | 781 |
| BssECI | CCNNGG | 3 cut(s) | 129, 130, 1051 |
| BssMI | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 1053 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 689 |
| BstC8I | GCNNGC | 2 cut(s) | 264, 525 |
| BstDEI | CTNAG | 3 cut(s) | 73, 149, 579 |
| BstF5I | GGATG | 5 cut(s) | 171, 185, 313, 814, 896 |
| BstH2I | RGCGCY | 1 cut(s) | 117 |
| BstHHI | GCGC | 2 cut(s) | 116, 633 |
| BstKTI | GATC | 5 cut(s) | 143, 373, 553, 671, 1058 |
| BstMBI | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 689 |
| BstNI | CCWGG | 2 cut(s) | 131, 1053 |
| BstNSI | RCATGY | 1 cut(s) | 325 |
| BstSCI | CCNGG | 2 cut(s) | 129, 1051 |
| BstSFI | CTRYAG | 1 cut(s) | 1038 |
| BstV1I | GCAGC | 1 cut(s) | 676 |
| BstX2I | RGATCY | 2 cut(s) | 370, 550 |
| BstYI | RGATCY | 2 cut(s) | 370, 550 |
| BsuRI | GGCC | 1 cut(s) | 736 |
| BtsCI | GGATG | 5 cut(s) | 171, 185, 313, 814, 896 |
| BtsIMutI | CAGTG | 2 cut(s) | 81, 468 |
| Cac8I | GCNNGC | 2 cut(s) | 264, 525 |
| CfoI | GCGC | 2 cut(s) | 116, 633 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 2 cut(s) | 721, 774 |
| CviAII | CATG | 2 cut(s) | 234, 322 |
| CviQI | GTAC | 2 cut(s) | 721, 774 |
| DdeI | CTNAG | 3 cut(s) | 73, 149, 579 |
| DpnI | GATC | 5 cut(s) | 142, 372, 552, 670, 1057 |
| DpnII | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| Eco24I | GRGCYC | 1 cut(s) | 578 |
| Eco32I | GATATC | 1 cut(s) | 1048 |
| Eco57I | CTGAAG | 1 cut(s) | 519 |
| EcoRII | CCWGG | 2 cut(s) | 129, 1051 |
| EcoRV | GATATC | 1 cut(s) | 1048 |
| EcoT22I | ATGCAT | 1 cut(s) | 767 |
| EcoT38I | GRGCYC | 1 cut(s) | 578 |
| FaeI | CATG | 2 cut(s) | 237, 325 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 137, 169, 207, 239, 845, 877 |
| FatI | CATG | 2 cut(s) | 233, 321 |
| Fnu4HI | GCNGC | 1 cut(s) | 690 |
| FokI | GGATG | 5 cut(s) | 158, 172, 320, 801, 883 |
| FriOI | GRGCYC | 1 cut(s) | 578 |
| Fsp4HI | GCNGC | 1 cut(s) | 690 |
| FspBI | CTAG | 3 cut(s) | 125, 335, 678 |
| FspI | TGCGCA | 1 cut(s) | 632 |
| GlaI | GCGC | 2 cut(s) | 115, 632 |
| GluI | GCNGC | 1 cut(s) | 690 |
| GsuI | CTGGAG | 1 cut(s) | 684 |
| HaeII | RGCGCY | 1 cut(s) | 117 |
| HaeIII | GGCC | 1 cut(s) | 736 |
| HgaI | GACGC | 1 cut(s) | 53 |
| HhaI | GCGC | 2 cut(s) | 116, 633 |
| Hin1II | CATG | 2 cut(s) | 237, 325 |
| Hin6I | GCGC | 2 cut(s) | 114, 631 |
| HinP1I | GCGC | 2 cut(s) | 114, 631 |
| HindIII | AAGCTT | 1 cut(s) | 260 |
| HinfI | GANTC | 4 cut(s) | 52, 58, 287, 382 |
| HphI | GGTGA | 1 cut(s) | 652 |
| Hpy188I | TCNGA | 5 cut(s) | 57, 193, 286, 673, 877 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 294, 818 |
| HpyAV | CCTTC | 2 cut(s) | 8, 597 |
| HpyCH4IV | ACGT | 3 cut(s) | 619, 719, 772 |
| HpyCH4V | TGCA | 9 cut(s) | 29, 377, 527, 606, 692, 750, 765, 814, 1007 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 689 |
| HpyF3I | CTNAG | 3 cut(s) | 73, 149, 579 |
| HpySE526I | ACGT | 3 cut(s) | 619, 719, 772 |
| Hsp92II | CATG | 2 cut(s) | 237, 325 |
| HspAI | GCGC | 2 cut(s) | 114, 631 |
| Kzo9I | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| LmnI | GCTCC | 1 cut(s) | 253 |
| Lsp1109I | GCAGC | 1 cut(s) | 676 |
| LweI | GCATC | 2 cut(s) | 298, 823 |
| MaeI | CTAG | 3 cut(s) | 125, 335, 678 |
| MaeII | ACGT | 3 cut(s) | 619, 719, 772 |
| MaeIII | GTNAC | 3 cut(s) | 703, 710, 785 |
| MalI | GATC | 5 cut(s) | 142, 372, 552, 670, 1057 |
| MboI | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| MboII | GAAGA | 7 cut(s) | 150, 512, 515, 560, 635, 929, 1082 |
| MflI | RGATCY | 2 cut(s) | 370, 550 |
| MhlI | GDGCHC | 1 cut(s) | 578 |
| MluCI | AATT | 2 cut(s) | 244, 1001 |
| MlyI | GAGTC | 1 cut(s) | 296 |
| MmeI | TCCRAC | 2 cut(s) | 382, 785 |
| MnlI | CCTC | 7 cut(s) | 193, 199, 471, 659, 726, 851, 1036 |
| Mph1103I | ATGCAT | 1 cut(s) | 767 |
| MseI | TTAA | 2 cut(s) | 243, 425 |
| MspR9I | CCNGG | 2 cut(s) | 131, 1053 |
| Mva1269I | GAATGC | 1 cut(s) | 767 |
| MvaI | CCWGG | 2 cut(s) | 131, 1053 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 689 |
| NdeII | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| NlaIII | CATG | 2 cut(s) | 237, 325 |
| NlaIV | GGNNCC | 1 cut(s) | 255 |
| NmuCI | GTSAC | 3 cut(s) | 703, 710, 785 |
| NsbI | TGCGCA | 1 cut(s) | 632 |
| NsiI | ATGCAT | 1 cut(s) | 767 |
| NspI | RCATGY | 1 cut(s) | 325 |
| PasI | CCCWGGG | 1 cut(s) | 130 |
| PciI | ACATGT | 1 cut(s) | 321 |
| PctI | GAATGC | 1 cut(s) | 767 |
| PfeI | GAWTC | 3 cut(s) | 52, 58, 382 |
| PkrI | GCNGC | 1 cut(s) | 691 |
| PleI | GAGTC | 1 cut(s) | 295 |
| PpsI | GAGTC | 1 cut(s) | 295 |
| PscI | ACATGT | 1 cut(s) | 321 |
| PshBI | ATTAAT | 1 cut(s) | 243 |
| Psp6I | CCWGG | 2 cut(s) | 129, 1051 |
| PspGI | CCWGG | 2 cut(s) | 129, 1051 |
| PspN4I | GGNNCC | 1 cut(s) | 255 |
| PsuI | RGATCY | 2 cut(s) | 370, 550 |
| RsaI | GTAC | 2 cut(s) | 722, 775 |
| RsaNI | GTAC | 2 cut(s) | 721, 774 |
| SaqAI | TTAA | 2 cut(s) | 243, 425 |
| SatI | GCNGC | 1 cut(s) | 690 |
| Sau3AI | GATC | 5 cut(s) | 140, 370, 550, 668, 1055 |
| SchI | GAGTC | 1 cut(s) | 296 |
| ScrFI | CCNGG | 2 cut(s) | 131, 1053 |
| SduI | GDGCHC | 1 cut(s) | 578 |
| SfaNI | GCATC | 2 cut(s) | 298, 823 |
| SfcI | CTRYAG | 1 cut(s) | 1038 |
| Sse9I | AATT | 2 cut(s) | 244, 1001 |
| SspMI | CTAG | 3 cut(s) | 125, 335, 678 |
| StyD4I | CCNGG | 2 cut(s) | 129, 1051 |
| TaiI | ACGT | 3 cut(s) | 622, 722, 775 |
| TaqI | TCGA | 2 cut(s) | 295, 1058 |
| TasI | AATT | 2 cut(s) | 244, 1001 |
| TfiI | GAWTC | 3 cut(s) | 52, 58, 382 |
| Tru1I | TTAA | 2 cut(s) | 243, 425 |
| Tru9I | TTAA | 2 cut(s) | 243, 425 |
| TscAI | CASTG | 2 cut(s) | 81, 475 |
| TseFI | GTSAC | 3 cut(s) | 703, 710, 785 |
| TseI | GCWGC | 1 cut(s) | 689 |
| Tsp45I | GTSAC | 3 cut(s) | 703, 710, 785 |
| TspDTI | ATGAA | 8 cut(s) | 145, 213, 456, 561, 579, 659, 902, 984 |
| TspRI | CASTG | 2 cut(s) | 81, 475 |
| VspI | ATTAAT | 1 cut(s) | 243 |
| XapI | RAATTY | 1 cut(s) | 1001 |
| XceI | RCATGY | 1 cut(s) | 325 |
| XspI | CTAG | 3 cut(s) | 125, 335, 678 |
| Zsp2I | ATGCAT | 1 cut(s) | 767 |