RchiOBHm_Chr7g0231721

MatE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000562
Physical Location & Seq
Forward (+)
55408859 .. 55410060
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20767

Sequence Viewer

Length: 222 bp
ATGATGAATTTCACCTCCAATCCCGCTGCTTTGATTAATGAATTTGCTGCCTATCTCAACAAGAGGCAGATGCATGGTGAAAAAGAAGAATCAGCTATAACTGGGAGTGAAAGCCACACTCCACTCCTTGAAAAATTTGCTGGCTTTCTTGCAGAAACTGATTGTGTCCCACATGAAGAAGCCTCAGTACTTGAGCTCACAAGGCATTGTGTATCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

73

Amino Acids

8.09

Weight (kDa)

4.99

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AcsI RAATTY 3 cut(s) 7, 41, 134
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 2 cut(s) 95, 196
AluI AGCT 2 cut(s) 95, 196
Alw21I GWGCWC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 26, 47
ApoI RAATTY 3 cut(s) 7, 41, 134
AseI ATTAAT 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 4, 89
BanII GRGCYC 1 cut(s) 198
BarI GAAGNNNNNNTAC 2 cut(s) 171, 203
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 13, 34
BfaI CTAG 1 cut(s) 220
BisI GCNGC 2 cut(s) 27, 48
BlsI GCNGC 2 cut(s) 28, 49
BmcAI AGTACT 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 13, 34
BsiHKAI GWGCWC 1 cut(s) 198
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 198
BspACI CCGC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 197
BsrI ACTGG 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 13, 34
Cac8I GCNNGC 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 74, 173
CviJI RGCY 5 cut(s) 95, 114, 144, 182, 196
CviKI_1 RGCY 5 cut(s) 95, 114, 144, 182, 196
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 2 cut(s) 77, 176
FaiI YATR 3 cut(s) 75, 98, 174
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 73, 172
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 27, 48
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 27, 48
FspBI CTAG 1 cut(s) 220
GluI GCNGC 2 cut(s) 27, 48
Hin1II CATG 2 cut(s) 77, 176
HinfI GANTC 1 cut(s) 89
HphI GGTGA 2 cut(s) 4, 89
HpyCH4V TGCA 2 cut(s) 73, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 2 cut(s) 77, 176
LpnPI CCDG 2 cut(s) 87, 126
Lsp1109I GCAGC 2 cut(s) 13, 34
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 220
MboII GAAGA 2 cut(s) 98, 188
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 3 cut(s) 7, 41, 134
MnlI CCTC 3 cut(s) 25, 57, 193
Mph1103I ATGCAT 1 cut(s) 75
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 77, 176
NsiI ATGCAT 1 cut(s) 75
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 28, 49
PshBI ATTAAT 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 27, 48
ScaI AGTACT 1 cut(s) 189
SduI GDGCHC 1 cut(s) 198
SetI ASST 3 cut(s) 17, 97, 198
SfaNI GCATC 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 7, 41, 134
SsiI CCGC 1 cut(s) 24
SspMI CTAG 1 cut(s) 220
SstI GAGCTC 1 cut(s) 198
TasI AATT 3 cut(s) 7, 41, 134
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 2 cut(s) 26, 47
TspDTI ATGAA 3 cut(s) 20, 54, 189
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 3 cut(s) 7, 41, 134
XspI CTAG 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.