Prupe.7G119900_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000562
Physical Location & Seq
Reverse (-)
14366297 .. 14366707
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G119900.1

Sequence Viewer

Length: 411 bp
ATGGGAGAAAAAGTTGAATCTACCACTACTGTTACTAATGCTACAACTACTATTATTTCTGAGTCTGAGGCAAATCCAAACATGAAGCTTTGCTCTGTTCTTTTGACTGGTTTCAATTATATTCCTTGGTCCAGAGCTGTTACTTTAGCTCTTGGAGGAAAATCAAAGCTGGAATATATTAATGGAAAAATTCCAGCTCCAGATGATGGTGATCCAAAATTTGAAGAATGGTTGTCAAAGGATCAACTTGTAATGTCTTGGATTTTGAATTCCATGGGGCCACAAGTTGCTAAAATGTTCAGCTACTCAGATTCCTCTCAAAACTTGTGGGAGTCTCTTAAAGAGATGTATGAGCAGCAAGACAATGCAGCCCGAATTTTTGAGTTAAAGAGAGAAATTGCAGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 rve

Protein Analysis

137

Amino Acids

15.25

Weight (kDa)

4.68

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AclWI GGATC 2 cut(s) 206, 249
AcsI RAATTY 4 cut(s) 189, 218, 268, 375
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 4 cut(s) 17, 115, 224, 268
AluBI AGCT 7 cut(s) 88, 137, 149, 169, 197, 303, 407
AluI AGCT 7 cut(s) 88, 137, 149, 169, 197, 303, 407
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 2 cut(s) 206, 249
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 355, 368
ApoI RAATTY 4 cut(s) 189, 218, 268, 375
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 129, 278
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 367, 380
BccI CCATC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 339
BisI GCNGC 2 cut(s) 356, 369
BlsI GCNGC 2 cut(s) 357, 370
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 129, 278
BmiI GGNNCC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 125, 273
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 125, 273
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 3 cut(s) 51, 57, 321
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 2 cut(s) 367, 380
BshFI GGCC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 211, 241
Bsp19I CCATGG 1 cut(s) 273
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 3 cut(s) 52, 58, 320
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 2 cut(s) 206, 249
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 125, 273
BssMI GATC 2 cut(s) 211, 241
BssT1I CCWWGG 2 cut(s) 125, 273
Bst4CI ACNGT 1 cut(s) 31
BstDEI CTNAG 4 cut(s) 60, 66, 307, 408
BstDSI CCRYGG 1 cut(s) 273
BstKTI GATC 2 cut(s) 214, 244
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 211, 241
BstV1I GCAGC 2 cut(s) 367, 380
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 129, 278
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 2 cut(s) 82, 274
CviJI RGCY 9 cut(s) 88, 137, 149, 169, 197, 280, 303, 371, 407
CviKI_1 RGCY 9 cut(s) 88, 137, 149, 169, 197, 280, 303, 371, 407
DdeI CTNAG 4 cut(s) 60, 66, 307, 408
DpnI GATC 2 cut(s) 213, 243
DpnII GATC 2 cut(s) 211, 241
Eco130I CCWWGG 2 cut(s) 125, 273
Eco47I GGWCC 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 125, 273
ErhI CCWWGG 2 cut(s) 125, 273
FaeI CATG 2 cut(s) 85, 277
FaiI YATR 5 cut(s) 83, 120, 177, 275, 351
FatI CATG 2 cut(s) 81, 273
Fnu4HI GCNGC 2 cut(s) 356, 369
Fsp4HI GCNGC 2 cut(s) 356, 369
GluI GCNGC 2 cut(s) 356, 369
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 2 cut(s) 85, 277
HindIII AAGCTT 2 cut(s) 86, 405
HinfI GANTC 4 cut(s) 17, 62, 311, 332
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 3 cut(s) 61, 67, 310
Hpy188III TCNNGA 2 cut(s) 132, 200
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 368, 401
HpyF3I CTNAG 4 cut(s) 60, 66, 307, 408
Hsp92II CATG 2 cut(s) 85, 277
Kzo9I GATC 2 cut(s) 211, 241
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 93, 145, 155, 207, 213
Lsp1109I GCAGC 2 cut(s) 367, 380
MaeIII GTNAC 2 cut(s) 31, 139
MalI GATC 2 cut(s) 213, 243
MboI GATC 2 cut(s) 211, 241
MboII GAAGA 1 cut(s) 236
MluCI AATT 6 cut(s) 115, 189, 218, 268, 375, 396
MlyI GAGTC 2 cut(s) 71, 341
MnlI CCTC 3 cut(s) 61, 149, 325
MseI TTAA 3 cut(s) 180, 339, 386
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 211, 241
NlaIII CATG 2 cut(s) 85, 277
NlaIV GGNNCC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 17, 311
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 2 cut(s) 357, 370
PleI GAGTC 2 cut(s) 70, 340
PpsI GAGTC 2 cut(s) 70, 340
PshBI ATTAAT 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 129, 278
SaqAI TTAA 3 cut(s) 180, 339, 386
SatI GCNGC 2 cut(s) 356, 369
Sau3AI GATC 2 cut(s) 211, 241
Sau96I GGNCC 2 cut(s) 129, 278
SchI GAGTC 2 cut(s) 71, 341
SetI ASST 7 cut(s) 90, 139, 151, 171, 199, 305, 409
SinI GGWCC 1 cut(s) 129
Sse9I AATT 6 cut(s) 115, 189, 218, 268, 375, 396
StyI CCWWGG 2 cut(s) 125, 273
TaaI ACNGT 1 cut(s) 31
TasI AATT 6 cut(s) 115, 189, 218, 268, 375, 396
TfiI GAWTC 2 cut(s) 17, 311
Tru1I TTAA 3 cut(s) 180, 339, 386
Tru9I TTAA 3 cut(s) 180, 339, 386
TseI GCWGC 2 cut(s) 355, 368
TspDTI ATGAA 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 129
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 4 cut(s) 189, 218, 268, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.