pycom16g14630

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000562
Physical Location & Seq
Forward (+)
10713498 .. 10713953
456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g14630.1

Sequence Viewer

Length: 456 bp
ATGTATGGCAGCCAAAACAATGTTGCACGGGTCTTCCAATTAAAGAAGGACATCTCCGATCTGCAGCAAGATGGCAAACCGTTTGTGCAACTCCTAGGAAGCATGAAAAGCATGTGGAATGAGTTGGAAATCTATCGCCCTCACACAACCGACGCAGCACTGCTACGAAAGAGAGCAGAAGAAGACAAGATATTTCAACTCTTGTCTAGTCTTGATTCAACGTATGAAGATCTTCGATGTCACATACTCATGAACACTGAGCTTCCTTCTTTCACCAGTATGTGTGCGACGATTCAACGAGAAGAAGTAAGAAGGAAAGTTATGAACATAGGTACAACGACCAGTGTACCTGAGGCTAAGGCATATATAACCAACGAAAAGAGGTACAAAGGAAAACATTCGAACTTGAAATGTCAACACTGCAATAATATAGGTCACGTCAAAGACACATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

152

Amino Acids

17.41

Weight (kDa)

8.8

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 334, 348, 386
AgsI TTSAA 4 cut(s) 197, 219, 296, 409
AjiI CACGTC 1 cut(s) 439
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
ApeKI GCWGC 3 cut(s) 9, 64, 155
Asp700I GAANNNNTTC 2 cut(s) 231, 397
AspA2I CCTAGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 265
AsuII TTCGAA 1 cut(s) 401
AvrII CCTAGG 1 cut(s) 94
AxyI CCTNAGG 1 cut(s) 351
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BbsI GAAGAC 2 cut(s) 25, 189
BbvI GCAGC 3 cut(s) 21, 76, 167
BccI CCATC 1 cut(s) 65
BfaI CTAG 3 cut(s) 95, 207, 454
BfmI CTRYAG 1 cut(s) 62
BglII AGATCT 1 cut(s) 229
BisI GCNGC 3 cut(s) 10, 65, 156
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 3 cut(s) 11, 66, 157
BmgBI CACGTC 1 cut(s) 439
BpiI GAAGAC 2 cut(s) 25, 189
Bpu10I CCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 276, 342
Bse21I CCTNAGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 249, 342
BseNI ACTGG 2 cut(s) 276, 342
BseXI GCAGC 3 cut(s) 21, 76, 167
Bsp119I TTCGAA 1 cut(s) 401
Bsp143I GATC 2 cut(s) 58, 229
BspCNI CTCAG 2 cut(s) 250, 343
BspHI TCATGA 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 401
BsrI ACTGG 2 cut(s) 276, 342
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 58, 229
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 401
BstDEI CTNAG 3 cut(s) 258, 351, 357
BstKTI GATC 2 cut(s) 61, 232
BstMBI GATC 2 cut(s) 58, 229
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 115, 453
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 21, 76, 167
BstV2I GAAGAC 2 cut(s) 25, 189
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 439
BtsI GCAGTG 2 cut(s) 158, 418
BtsIMutI CAGTG 4 cut(s) 158, 255, 349, 418
CciI TCATGA 1 cut(s) 249
CseI GACGC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 333, 347, 385
CviAII CATG 4 cut(s) 103, 112, 250, 450
CviJI RGCY 3 cut(s) 12, 262, 356
CviKI_1 RGCY 3 cut(s) 12, 262, 356
CviQI GTAC 3 cut(s) 333, 347, 385
DdeI CTNAG 3 cut(s) 258, 351, 357
DpnI GATC 2 cut(s) 60, 231
DpnII GATC 2 cut(s) 58, 229
Eco130I CCWWGG 1 cut(s) 94
Eco81I CCTNAGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 106, 115, 253, 453
FatI CATG 4 cut(s) 102, 111, 249, 449
Fnu4HI GCNGC 3 cut(s) 10, 65, 156
Fsp4HI GCNGC 3 cut(s) 10, 65, 156
FspBI CTAG 3 cut(s) 95, 207, 454
GluI GCNGC 3 cut(s) 10, 65, 156
HgaI GACGC 1 cut(s) 161
Hin1II CATG 4 cut(s) 106, 115, 253, 453
HincII GTYRAC 1 cut(s) 416
HindII GTYRAC 1 cut(s) 416
HinfI GANTC 2 cut(s) 215, 292
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 347, 416
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 212, 250
Hpy8I GTNNAC 2 cut(s) 347, 416
Hpy99I CGWCG 2 cut(s) 155, 292
HpyAV CCTTC 3 cut(s) 40, 276, 306
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 221, 438
HpyCH4V TGCA 4 cut(s) 26, 64, 88, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 3 cut(s) 258, 351, 357
HpySE526I ACGT 2 cut(s) 221, 438
Hsp92II CATG 4 cut(s) 106, 115, 253, 453
Kzo9I GATC 2 cut(s) 58, 229
LpnPI CCDG 3 cut(s) 289, 355, 363
Lsp1109I GCAGC 3 cut(s) 21, 76, 167
MaeI CTAG 3 cut(s) 95, 207, 454
MaeII ACGT 2 cut(s) 221, 438
MaeIII GTNAC 2 cut(s) 239, 434
MalI GATC 2 cut(s) 60, 231
MboI GATC 2 cut(s) 58, 229
MboII GAAGA 6 cut(s) 25, 191, 194, 224, 239, 314
MflI RGATCY 1 cut(s) 229
MluCI AATT 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 3 cut(s) 150, 346, 375
MroXI GAANNNNTTC 2 cut(s) 231, 397
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 248, 278
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 2 cut(s) 58, 229
NlaIII CATG 4 cut(s) 106, 115, 253, 453
NmuCI GTSAC 2 cut(s) 239, 434
NspI RCATGY 2 cut(s) 115, 453
NspV TTCGAA 1 cut(s) 401
PagI TCATGA 1 cut(s) 249
PdmI GAANNNNTTC 2 cut(s) 231, 397
PfeI GAWTC 2 cut(s) 215, 292
PkrI GCNGC 3 cut(s) 11, 66, 157
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 3 cut(s) 334, 348, 386
RsaNI GTAC 3 cut(s) 333, 347, 385
RseI CAYNNNNRTG 2 cut(s) 248, 278
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 3 cut(s) 10, 65, 156
Sau3AI GATC 2 cut(s) 58, 229
SetI ASST 7 cut(s) 224, 264, 334, 352, 386, 436, 441
SfcI CTRYAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 248, 278
Sse9I AATT 1 cut(s) 38
SspMI CTAG 3 cut(s) 95, 207, 454
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 2 cut(s) 224, 441
TaqI TCGA 2 cut(s) 235, 401
TasI AATT 1 cut(s) 38
TfiI GAWTC 2 cut(s) 215, 292
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 4 cut(s) 165, 262, 349, 425
TseFI GTSAC 2 cut(s) 239, 434
TseI GCWGC 3 cut(s) 9, 64, 155
Tsp45I GTSAC 2 cut(s) 239, 434
TspDTI ATGAA 4 cut(s) 119, 240, 266, 338
TspRI CASTG 4 cut(s) 165, 262, 349, 425
XceI RCATGY 2 cut(s) 115, 453
XmaJI CCTAGG 1 cut(s) 94
XmnI GAANNNNTTC 2 cut(s) 231, 397
XspI CTAG 3 cut(s) 95, 207, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.