transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1163 |
| Acc36I | ACCTGC | 1 cut(s) | 945 |
| AciI | CCGC | 1 cut(s) | 247 |
| AclI | AACGTT | 1 cut(s) | 383 |
| AclWI | GGATC | 2 cut(s) | 919, 1200 |
| AcoI | YGGCCR | 2 cut(s) | 155, 1352 |
| AcsI | RAATTY | 5 cut(s) | 389, 407, 521, 1183, 1209 |
| AcuI | CTGAAG | 1 cut(s) | 409 |
| AfaI | GTAC | 1 cut(s) | 865 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 242 |
| AflII | CTTAAG | 1 cut(s) | 454 |
| AflIII | ACRYGT | 1 cut(s) | 1568 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 658, 690 |
| AluBI | AGCT | 5 cut(s) | 97, 855, 990, 1286, 1391 |
| AluI | AGCT | 5 cut(s) | 97, 855, 990, 1286, 1391 |
| Alw21I | GWGCWC | 1 cut(s) | 99 |
| Alw26I | GTCTC | 1 cut(s) | 1052 |
| AlwI | GGATC | 2 cut(s) | 919, 1200 |
| AoxI | GGCC | 3 cut(s) | 155, 428, 1352 |
| ApeKI | GCWGC | 2 cut(s) | 998, 1283 |
| ApoI | RAATTY | 5 cut(s) | 389, 407, 521, 1183, 1209 |
| AseI | ATTAAT | 1 cut(s) | 485 |
| AspLEI | GCGC | 2 cut(s) | 1003, 1114 |
| AspS9I | GGNCC | 2 cut(s) | 1156, 1531 |
| AsuHPI | GGTGA | 4 cut(s) | 134, 225, 301, 1119 |
| AvaII | GGWCC | 2 cut(s) | 1156, 1531 |
| BaeGI | GKGCMC | 1 cut(s) | 1590 |
| BalI | TGGCCA | 2 cut(s) | 157, 1354 |
| BanII | GRGCYC | 1 cut(s) | 99 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 683, 715 |
| BauI | CACGAG | 1 cut(s) | 461 |
| BbsI | GAAGAC | 3 cut(s) | 1078, 1313, 1404 |
| Bbv12I | GWGCWC | 1 cut(s) | 99 |
| BbvCI | CCTCAGC | 1 cut(s) | 1392 |
| BbvI | GCAGC | 2 cut(s) | 985, 1295 |
| BccI | CCATC | 1 cut(s) | 1012 |
| BcoDI | GTCTC | 1 cut(s) | 1052 |
| BfaI | CTAG | 5 cut(s) | 66, 1109, 1548, 1557, 1605 |
| BfoI | RGCGCY | 1 cut(s) | 1115 |
| BfrI | CTTAAG | 1 cut(s) | 454 |
| BfuAI | ACCTGC | 1 cut(s) | 945 |
| BglII | AGATCT | 3 cut(s) | 62, 696, 961 |
| BisI | GCNGC | 2 cut(s) | 999, 1284 |
| BlsI | GCNGC | 2 cut(s) | 1000, 1285 |
| Bme18I | GGWCC | 2 cut(s) | 1156, 1531 |
| BmgT120I | GGNCC | 2 cut(s) | 1156, 1531 |
| BmsI | GCATC | 1 cut(s) | 240 |
| BpiI | GAAGAC | 3 cut(s) | 1078, 1313, 1404 |
| BpmI | CTGGAG | 1 cut(s) | 1272 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1392 |
| BpuEI | CTTGAG | 1 cut(s) | 124 |
| Bsa29I | ATCGAT | 2 cut(s) | 223, 1447 |
| BsaAI | YACGTR | 1 cut(s) | 502 |
| BsaBI | GATNNNNATC | 1 cut(s) | 929 |
| BsaJI | CCNNGG | 1 cut(s) | 1065 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 242 |
| Bse1I | ACTGG | 5 cut(s) | 84, 158, 1148, 1159, 1289 |
| Bse3DI | GCAATG | 1 cut(s) | 564 |
| Bse8I | GATNNNNATC | 1 cut(s) | 929 |
| BseCI | ATCGAT | 2 cut(s) | 223, 1447 |
| BseDI | CCNNGG | 1 cut(s) | 1065 |
| BseGI | GGATG | 4 cut(s) | 208, 255, 1236, 1460 |
| BseJI | GATNNNNATC | 1 cut(s) | 929 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BseMI | GCAATG | 1 cut(s) | 564 |
| BseMII | CTCAG | 2 cut(s) | 935, 1383 |
| BseNI | ACTGG | 5 cut(s) | 84, 158, 1148, 1159, 1289 |
| BseSI | GKGCMC | 1 cut(s) | 1590 |
| BseXI | GCAGC | 2 cut(s) | 985, 1295 |
| Bsh1285I | CGRYCG | 2 cut(s) | 227, 1079 |
| BshFI | GGCC | 3 cut(s) | 157, 430, 1354 |
| BshVI | ATCGAT | 2 cut(s) | 223, 1447 |
| BsiEI | CGRYCG | 2 cut(s) | 227, 1079 |
| BsiHKAI | GWGCWC | 1 cut(s) | 99 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BsmAI | GTCTC | 1 cut(s) | 1052 |
| BsnI | GGCC | 3 cut(s) | 157, 430, 1354 |
| Bsp1286I | GDGCHC | 2 cut(s) | 99, 1590 |
| BspACI | CCGC | 1 cut(s) | 247 |
| BspANI | GGCC | 3 cut(s) | 157, 430, 1354 |
| BspCNI | CTCAG | 2 cut(s) | 936, 1384 |
| BspDI | ATCGAT | 2 cut(s) | 223, 1447 |
| BspHI | TCATGA | 1 cut(s) | 1498 |
| BspMI | ACCTGC | 1 cut(s) | 945 |
| BspPI | GGATC | 2 cut(s) | 919, 1200 |
| BspTI | CTTAAG | 1 cut(s) | 454 |
| BsrDI | GCAATG | 1 cut(s) | 564 |
| BsrI | ACTGG | 5 cut(s) | 84, 158, 1148, 1159, 1289 |
| BssECI | CCNNGG | 1 cut(s) | 1065 |
| BssSI | CACGAG | 1 cut(s) | 461 |
| BssT1I | CCWWGG | 1 cut(s) | 1065 |
| Bst2BI | CACGAG | 1 cut(s) | 461 |
| Bst4CI | ACNGT | 4 cut(s) | 173, 611, 1054, 1505 |
| Bst6I | CTCTTC | 1 cut(s) | 834 |
| BstAFI | CTTAAG | 1 cut(s) | 454 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 744 |
| BstBAI | YACGTR | 1 cut(s) | 502 |
| BstC8I | GCNNGC | 2 cut(s) | 992, 996 |
| BstDEI | CTNAG | 4 cut(s) | 100, 944, 1392, 1582 |
| BstF5I | GGATG | 4 cut(s) | 208, 255, 1236, 1460 |
| BstH2I | RGCGCY | 1 cut(s) | 1115 |
| BstHHI | GCGC | 2 cut(s) | 1003, 1114 |
| BstMAI | GTCTC | 1 cut(s) | 1052 |
| BstMCI | CGRYCG | 2 cut(s) | 227, 1079 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 744, 1000 |
| BstNSI | RCATGY | 3 cut(s) | 23, 998, 1572 |
| BstSLI | GKGCMC | 1 cut(s) | 1590 |
| BstSNI | TACGTA | 1 cut(s) | 502 |
| BstV1I | GCAGC | 2 cut(s) | 985, 1295 |
| BstV2I | GAAGAC | 3 cut(s) | 1078, 1313, 1404 |
| BstX2I | RGATCY | 3 cut(s) | 62, 696, 961 |
| BstYI | RGATCY | 3 cut(s) | 62, 696, 961 |
| Bsu15I | ATCGAT | 2 cut(s) | 223, 1447 |
| BsuRI | GGCC | 3 cut(s) | 157, 430, 1354 |
| BsuTUI | ATCGAT | 2 cut(s) | 223, 1447 |
| BtsCI | GGATG | 4 cut(s) | 208, 255, 1236, 1460 |
| BtsI | GCAGTG | 2 cut(s) | 637, 927 |
| BtsIMutI | CAGTG | 5 cut(s) | 165, 637, 927, 975, 1296 |
| BveI | ACCTGC | 1 cut(s) | 945 |
| Cac8I | GCNNGC | 2 cut(s) | 992, 996 |
| CciI | TCATGA | 1 cut(s) | 1498 |
| CfoI | GCGC | 2 cut(s) | 1003, 1114 |
| Cfr13I | GGNCC | 2 cut(s) | 1156, 1531 |
| ClaI | ATCGAT | 2 cut(s) | 223, 1447 |
| CseI | GACGC | 1 cut(s) | 1376 |
| Csp6I | GTAC | 1 cut(s) | 864 |
| CviQI | GTAC | 1 cut(s) | 864 |
| DdeI | CTNAG | 4 cut(s) | 100, 944, 1392, 1582 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1163 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1163 |
| EaeI | YGGCCR | 2 cut(s) | 155, 1352 |
| Eam1104I | CTCTTC | 1 cut(s) | 834 |
| EarI | CTCTTC | 1 cut(s) | 834 |
| EciI | GGCGGA | 1 cut(s) | 262 |
| Ecl136II | GAGCTC | 1 cut(s) | 97 |
| Eco105I | TACGTA | 1 cut(s) | 502 |
| Eco130I | CCWWGG | 1 cut(s) | 1065 |
| Eco24I | GRGCYC | 1 cut(s) | 99 |
| Eco47I | GGWCC | 2 cut(s) | 1156, 1531 |
| Eco53kI | GAGCTC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 1 cut(s) | 409 |
| EcoICRI | GAGCTC | 1 cut(s) | 97 |
| EcoT14I | CCWWGG | 1 cut(s) | 1065 |
| EcoT38I | GRGCYC | 1 cut(s) | 99 |
| ErhI | CCWWGG | 1 cut(s) | 1065 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 686, 718 |
| FauNDI | CATATG | 1 cut(s) | 338 |
| Fnu4HI | GCNGC | 2 cut(s) | 999, 1284 |
| FokI | GGATG | 4 cut(s) | 215, 262, 1223, 1467 |
| FriOI | GRGCYC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 2 cut(s) | 999, 1284 |
| FspBI | CTAG | 5 cut(s) | 66, 1109, 1548, 1557, 1605 |
| GlaI | GCGC | 2 cut(s) | 1002, 1113 |
| GluI | GCNGC | 2 cut(s) | 999, 1284 |
| GsuI | CTGGAG | 1 cut(s) | 1272 |
| HaeII | RGCGCY | 1 cut(s) | 1115 |
| HaeIII | GGCC | 3 cut(s) | 157, 430, 1354 |
| HgaI | GACGC | 1 cut(s) | 1376 |
| HhaI | GCGC | 2 cut(s) | 1003, 1114 |
| Hin6I | GCGC | 2 cut(s) | 1001, 1112 |
| HinP1I | GCGC | 2 cut(s) | 1001, 1112 |
| HincII | GTYRAC | 5 cut(s) | 167, 381, 469, 1033, 1380 |
| HindII | GTYRAC | 5 cut(s) | 167, 381, 469, 1033, 1380 |
| HinfI | GANTC | 6 cut(s) | 69, 107, 1226, 1270, 1469, 1544 |
| HpaI | GTTAAC | 2 cut(s) | 381, 469 |
| HphI | GGTGA | 4 cut(s) | 134, 225, 301, 1119 |
| Hpy166II | GTNNAC | 6 cut(s) | 167, 309, 381, 469, 1033, 1380 |
| Hpy188I | TCNGA | 2 cut(s) | 945, 1275 |
| Hpy188III | TCNNGA | 9 cut(s) | 66, 688, 955, 1433, 1452, 1499, 1548, 1557, 1605 |
| Hpy8I | GTNNAC | 6 cut(s) | 167, 309, 381, 469, 1033, 1380 |
| HpyAV | CCTTC | 6 cut(s) | 205, 595, 904, 1325, 1554, 1563 |
| HpyCH4III | ACNGT | 4 cut(s) | 173, 611, 1054, 1505 |
| HpyCH4IV | ACGT | 3 cut(s) | 383, 501, 671 |
| HpyCH4V | TGCA | 7 cut(s) | 253, 284, 738, 973, 1152, 1205, 1283 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 744, 1000 |
| HpyF3I | CTNAG | 4 cut(s) | 100, 944, 1392, 1582 |
| HpySE526I | ACGT | 3 cut(s) | 383, 501, 671 |
| HspAI | GCGC | 2 cut(s) | 1001, 1112 |
| KspAI | GTTAAC | 2 cut(s) | 381, 469 |
| LmnI | GCTCC | 1 cut(s) | 1291 |
| Lsp1109I | GCAGC | 2 cut(s) | 985, 1295 |
| LweI | GCATC | 1 cut(s) | 240 |
| MaeI | CTAG | 5 cut(s) | 66, 1109, 1548, 1557, 1605 |
| MaeII | ACGT | 3 cut(s) | 383, 501, 671 |
| MaeIII | GTNAC | 6 cut(s) | 32, 505, 620, 1054, 1176, 1564 |
| MflI | RGATCY | 3 cut(s) | 62, 696, 961 |
| MhlI | GDGCHC | 2 cut(s) | 99, 1590 |
| MlsI | TGGCCA | 2 cut(s) | 157, 1354 |
| MluNI | TGGCCA | 2 cut(s) | 157, 1354 |
| MnlI | CCTC | 6 cut(s) | 53, 457, 1135, 1240, 1387, 1511 |
| Mox20I | TGGCCA | 2 cut(s) | 157, 1354 |
| MscI | TGGCCA | 2 cut(s) | 157, 1354 |
| MslI | CAYNNNNRTG | 5 cut(s) | 203, 731, 848, 1020, 1503 |
| Msp20I | TGGCCA | 2 cut(s) | 157, 1354 |
| MspCI | CTTAAG | 1 cut(s) | 454 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 744, 1000 |
| NdeI | CATATG | 1 cut(s) | 338 |
| NmuCI | GTSAC | 2 cut(s) | 32, 1054 |
| NspI | RCATGY | 3 cut(s) | 23, 998, 1572 |
| PacI | TTAATTAA | 1 cut(s) | 489 |
| PaeI | GCATGC | 1 cut(s) | 998 |
| PagI | TCATGA | 1 cut(s) | 1498 |
| PciI | ACATGT | 1 cut(s) | 1568 |
| PfeI | GAWTC | 6 cut(s) | 69, 107, 1226, 1270, 1469, 1544 |
| PkrI | GCNGC | 2 cut(s) | 1000, 1285 |
| Ple19I | CGATCG | 2 cut(s) | 227, 1079 |
| Ppu21I | YACGTR | 1 cut(s) | 502 |
| PscI | ACATGT | 1 cut(s) | 1568 |
| PshBI | ATTAAT | 1 cut(s) | 485 |
| Psp124BI | GAGCTC | 1 cut(s) | 99 |
| Psp1406I | AACGTT | 1 cut(s) | 383 |
| PspPI | GGNCC | 2 cut(s) | 1156, 1531 |
| PsuI | RGATCY | 3 cut(s) | 62, 696, 961 |
| PvuI | CGATCG | 2 cut(s) | 227, 1079 |
| RsaI | GTAC | 1 cut(s) | 865 |
| RsaNI | GTAC | 1 cut(s) | 864 |
| RseI | CAYNNNNRTG | 5 cut(s) | 203, 731, 848, 1020, 1503 |
| SacI | GAGCTC | 1 cut(s) | 99 |
| SatI | GCNGC | 2 cut(s) | 999, 1284 |
| Sau96I | GGNCC | 2 cut(s) | 1156, 1531 |
| SduI | GDGCHC | 2 cut(s) | 99, 1590 |
| SfaNI | GCATC | 1 cut(s) | 240 |
| SinI | GGWCC | 2 cut(s) | 1156, 1531 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 203, 731, 848, 1020, 1503 |
| SmlI | CTYRAG | 2 cut(s) | 139, 454 |
| SmoI | CTYRAG | 2 cut(s) | 139, 454 |
| SnaBI | TACGTA | 1 cut(s) | 502 |
| SphI | GCATGC | 1 cut(s) | 998 |
| SsiI | CCGC | 1 cut(s) | 247 |
| SspI | AATATT | 2 cut(s) | 650, 1407 |
| SspMI | CTAG | 5 cut(s) | 66, 1109, 1548, 1557, 1605 |
| SstI | GAGCTC | 1 cut(s) | 99 |
| StyI | CCWWGG | 1 cut(s) | 1065 |
| TaaI | ACNGT | 4 cut(s) | 173, 611, 1054, 1505 |
| TaiI | ACGT | 3 cut(s) | 386, 504, 674 |
| TaqI | TCGA | 7 cut(s) | 24, 223, 448, 933, 1079, 1195, 1447 |
| TatI | WGTACW | 1 cut(s) | 863 |
| TfiI | GAWTC | 6 cut(s) | 69, 107, 1226, 1270, 1469, 1544 |
| TscAI | CASTG | 5 cut(s) | 165, 637, 927, 975, 1296 |
| TseFI | GTSAC | 2 cut(s) | 32, 1054 |
| TseI | GCWGC | 2 cut(s) | 998, 1283 |
| Tsp45I | GTSAC | 2 cut(s) | 32, 1054 |
| TspDTI | ATGAA | 7 cut(s) | 44, 187, 231, 402, 549, 999, 1004 |
| TspRI | CASTG | 5 cut(s) | 165, 637, 927, 975, 1296 |
| Vha464I | CTTAAG | 1 cut(s) | 454 |
| VpaK11BI | GGWCC | 2 cut(s) | 1156, 1531 |
| VspI | ATTAAT | 1 cut(s) | 485 |
| XapI | RAATTY | 5 cut(s) | 389, 407, 521, 1183, 1209 |
| XbaI | TCTAGA | 4 cut(s) | 65, 1547, 1556, 1604 |
| XceI | RCATGY | 3 cut(s) | 23, 998, 1572 |
| XspI | CTAG | 5 cut(s) | 66, 1109, 1548, 1557, 1605 |