MD13G1138400.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000562
Physical Location & Seq
Reverse (-)
10644682 .. 10645216
535 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1138400.v1.1.491

Sequence Viewer

Length: 207 bp
ATGTCAAACTTCACCTCAAACCCTATCTCCCTGATCAATGAGTTTGCTGCCTTTCTCCAAAAGAAGAGTGATATCGCTGAGGGTAACAATGTCACCACGAAAAATCCCACAGAAATGCTTGGAAAATTTGCTGGTTTTTTGGCAAATTCAAACACCACTACATCCGGCAATATCCCAGGATCGAGTCACTCAGAAGAAGATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

69

Amino Acids

7.31

Weight (kDa)

4.75

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 2 cut(s) 125, 145
AgsI TTSAA 1 cut(s) 150
AjnI CCWGG 1 cut(s) 175
AlwI GGATC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 125, 145
AsuHPI GGTGA 2 cut(s) 4, 85
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 33
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 161
BseMII CTCAG 2 cut(s) 69, 204
BseXI GCAGC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 165
Bsp143I GATC 2 cut(s) 33, 179
BspCNI CTCAG 2 cut(s) 70, 203
BspPI GGATC 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 33, 179
Bst2UI CCWGG 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 78, 190
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 2 cut(s) 36, 182
BstMBI GATC 2 cut(s) 33, 179
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 161
DdeI CTNAG 2 cut(s) 78, 190
DpnI GATC 2 cut(s) 35, 181
DpnII GATC 2 cut(s) 33, 179
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 175
EcoRV GATATC 1 cut(s) 73
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HapII CCGG 1 cut(s) 165
HinfI GANTC 1 cut(s) 184
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 4, 85
Hpy188I TCNGA 1 cut(s) 193
HpyF3I CTNAG 2 cut(s) 78, 190
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 2 cut(s) 33, 179
LpnPI CCDG 5 cut(s) 44, 117, 162, 178, 189
Lsp1109I GCAGC 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 83, 91, 185
MalI GATC 2 cut(s) 35, 181
MboI GATC 2 cut(s) 33, 179
MboII GAAGA 2 cut(s) 76, 206
MluCI AATT 2 cut(s) 125, 145
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 2 cut(s) 25, 73
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
NdeII GATC 2 cut(s) 33, 179
NmuCI GTSAC 2 cut(s) 91, 185
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 33, 179
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 177
SetI ASST 1 cut(s) 17
SgeI CNNG 8 cut(s) 43, 109, 131, 144, 177, 188, 189, 195
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 2 cut(s) 125, 145
StyD4I CCNGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 182
TasI AATT 2 cut(s) 125, 145
TseFI GTSAC 2 cut(s) 91, 185
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 91, 185
XapI RAATTY 2 cut(s) 125, 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.