pycom15g35180

Zinc-dependent metalloprotease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
35012015 .. 35012552
538 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g35180.1

Sequence Viewer

Length: 246 bp
ATGAACTTTACAGCCAATCCGGCTGAATTGTTGAATGAGTTCTCAACCTACCTTCAAACCAGAAAAGGAAGCACAGGTGAAACGTCGACTGGGGAAAGTCAAACTGCTCTTCTTGGACAGTTTGCAGGGTTCTTAGCTGAATCTGGTCATGTACCTCAAGGAGACATTCCAGGTATCATGTGTGCTCTTTCAACTGCTCTAAATGATCTAGCCACCAAGAAGCTGATTGGTGGGGTCATTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

8.4

Weight (kDa)

4.75

Isoelectric Point (pI)

19.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 86
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 3 cut(s) 34, 56, 192
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 2 cut(s) 137, 223
AluI AGCT 2 cut(s) 137, 223
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 205
BspQI GCTCTTC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 94
BssMI GATC 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 133
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
Csp6I GTAC 1 cut(s) 152
CviAII CATG 2 cut(s) 149, 178
CviJI RGCY 5 cut(s) 14, 23, 137, 212, 223
CviKI_1 RGCY 5 cut(s) 14, 23, 137, 212, 223
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 133
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 152, 181
FaiI YATR 2 cut(s) 150, 179
FatI CATG 2 cut(s) 148, 177
FblI GTMKAC 1 cut(s) 86
FspBI CTAG 1 cut(s) 209
HapII CCGG 1 cut(s) 20
Hin1II CATG 2 cut(s) 152, 181
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 87
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 2 cut(s) 152, 181
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 114
LpnPI CCDG 8 cut(s) 33, 60, 73, 75, 111, 129, 156, 183
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 83
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 26
MnlI CCTC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 38
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 152, 181
PciSI GCTCTTC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 187
SetI ASST 9 cut(s) 50, 54, 79, 86, 139, 157, 175, 225, 245
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 26
TfiI GAWTC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.