transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 702 |
| AccB1I | GGYRCC | 1 cut(s) | 653 |
| AccI | GTMKAC | 1 cut(s) | 765 |
| AciI | CCGC | 1 cut(s) | 1668 |
| AclI | AACGTT | 1 cut(s) | 106 |
| AclWI | GGATC | 1 cut(s) | 1874 |
| AcsI | RAATTY | 3 cut(s) | 12, 32, 315 |
| AcuI | CTGAAG | 1 cut(s) | 564 |
| AcyI | GRCGYC | 1 cut(s) | 699 |
| AfaI | GTAC | 4 cut(s) | 25, 904, 1231, 1844 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 436, 948 |
| AflIII | ACRYGT | 2 cut(s) | 66, 1504 |
| AjnI | CCWGG | 5 cut(s) | 146, 693, 1129, 1773, 1858 |
| AleI | CACNNNNGTG | 1 cut(s) | 804 |
| AluBI | AGCT | 9 cut(s) | 158, 324, 565, 752, 1052, 1406, 1651, 1828, 1900 |
| AluI | AGCT | 9 cut(s) | 158, 324, 565, 752, 1052, 1406, 1651, 1828, 1900 |
| Alw21I | GWGCWC | 1 cut(s) | 1830 |
| Alw26I | GTCTC | 2 cut(s) | 431, 1764 |
| AlwI | GGATC | 1 cut(s) | 1874 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1651 |
| Ama87I | CYCGRG | 1 cut(s) | 1563 |
| AoxI | GGCC | 1 cut(s) | 918 |
| ApeKI | GCWGC | 1 cut(s) | 1519 |
| ApoI | RAATTY | 3 cut(s) | 12, 32, 315 |
| AseI | ATTAAT | 1 cut(s) | 1356 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 672 |
| AspS9I | GGNCC | 1 cut(s) | 1422 |
| AsuHPI | GGTGA | 1 cut(s) | 1277 |
| AsuII | TTCGAA | 3 cut(s) | 676, 869, 1280 |
| AvaI | CYCGRG | 1 cut(s) | 1563 |
| AvaII | GGWCC | 1 cut(s) | 1422 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 886, 919 |
| BanI | GGYRCC | 1 cut(s) | 653 |
| BanII | GRGCYC | 3 cut(s) | 303, 1461, 1830 |
| BbsI | GAAGAC | 2 cut(s) | 600, 1031 |
| Bbv12I | GWGCWC | 1 cut(s) | 1830 |
| BbvI | GCAGC | 1 cut(s) | 1531 |
| BccI | CCATC | 1 cut(s) | 941 |
| BciT130I | CCWGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| BciVI | GTATCC | 2 cut(s) | 831, 1629 |
| BclI | TGATCA | 1 cut(s) | 1465 |
| BcoDI | GTCTC | 2 cut(s) | 431, 1764 |
| BfaI | CTAG | 3 cut(s) | 153, 423, 578 |
| BfuI | GTATCC | 2 cut(s) | 831, 1629 |
| BisI | GCNGC | 1 cut(s) | 1520 |
| BlsI | GCNGC | 1 cut(s) | 1521 |
| Bme1390I | CCNGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| Bme18I | GGWCC | 1 cut(s) | 1422 |
| BmeT110I | CYCGRG | 1 cut(s) | 1563 |
| BmgT120I | GGNCC | 1 cut(s) | 1422 |
| BmiI | GGNNCC | 4 cut(s) | 300, 655, 1204, 1424 |
| BmrFI | CCNGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| BmrI | ACTGGG | 1 cut(s) | 1082 |
| BmsI | GCATC | 3 cut(s) | 235, 508, 894 |
| BmuI | ACTGGG | 1 cut(s) | 1082 |
| BpiI | GAAGAC | 2 cut(s) | 600, 1031 |
| BpmI | CTGGAG | 4 cut(s) | 27, 919, 1221, 1707 |
| Bpu14I | TTCGAA | 3 cut(s) | 676, 869, 1280 |
| BpuEI | CTTGAG | 4 cut(s) | 392, 619, 1193, 1521 |
| BsaBI | GATNNNNATC | 1 cut(s) | 498 |
| BsaHI | GRCGYC | 1 cut(s) | 699 |
| BsaJI | CCNNGG | 2 cut(s) | 146, 1311 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 215, 245, 1705, 1735 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 436, 948 |
| Bse1I | ACTGG | 4 cut(s) | 10, 902, 1077, 1724 |
| Bse8I | GATNNNNATC | 1 cut(s) | 498 |
| BseBI | CCWGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| BseDI | CCNNGG | 2 cut(s) | 146, 1311 |
| BseGI | GGATG | 7 cut(s) | 335, 609, 844, 957, 1610, 1804, 1864 |
| BseJI | GATNNNNATC | 1 cut(s) | 498 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 436, 948 |
| BseMII | CTCAG | 3 cut(s) | 342, 597, 957 |
| BseNI | ACTGG | 4 cut(s) | 10, 902, 1077, 1724 |
| BseRI | GAGGAG | 2 cut(s) | 452, 1536 |
| BseXI | GCAGC | 1 cut(s) | 1531 |
| BseYI | CCCAGC | 1 cut(s) | 1402 |
| BsgI | GTGCAG | 1 cut(s) | 1140 |
| BshFI | GGCC | 1 cut(s) | 920 |
| BshNI | GGYRCC | 1 cut(s) | 653 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1830 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1563 |
| BslFI | GGGAC | 1 cut(s) | 1408 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 436, 948 |
| BsmAI | GTCTC | 2 cut(s) | 431, 1764 |
| BsmFI | GGGAC | 1 cut(s) | 1408 |
| BsnI | GGCC | 1 cut(s) | 920 |
| BsoBI | CYCGRG | 1 cut(s) | 1563 |
| Bsp119I | TTCGAA | 3 cut(s) | 676, 869, 1280 |
| Bsp1286I | GDGCHC | 3 cut(s) | 303, 1461, 1830 |
| Bsp1407I | TGTACA | 1 cut(s) | 1842 |
| Bsp143I | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| BspACI | CCGC | 1 cut(s) | 1668 |
| BspANI | GGCC | 1 cut(s) | 920 |
| BspCNI | CTCAG | 3 cut(s) | 341, 596, 956 |
| BspHI | TCATGA | 3 cut(s) | 1453, 1468, 1486 |
| BspLI | GGNNCC | 4 cut(s) | 300, 655, 1204, 1424 |
| BspPI | GGATC | 1 cut(s) | 1874 |
| BspT104I | TTCGAA | 3 cut(s) | 676, 869, 1280 |
| BspT107I | GGYRCC | 1 cut(s) | 653 |
| BsrGI | TGTACA | 1 cut(s) | 1842 |
| BsrI | ACTGG | 4 cut(s) | 10, 902, 1077, 1724 |
| BssECI | CCNNGG | 2 cut(s) | 146, 1311 |
| BssMI | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| BssNI | GRCGYC | 1 cut(s) | 699 |
| BssT1I | CCWWGG | 1 cut(s) | 1311 |
| Bst2UI | CCWGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| Bst4CI | ACNGT | 2 cut(s) | 658, 806 |
| Bst6I | CTCTTC | 4 cut(s) | 530, 940, 1398, 1827 |
| BstACI | GRCGYC | 1 cut(s) | 699 |
| BstAUI | TGTACA | 1 cut(s) | 1842 |
| BstBI | TTCGAA | 3 cut(s) | 676, 869, 1280 |
| BstC8I | GCNNGC | 3 cut(s) | 750, 1087, 1898 |
| BstDEI | CTNAG | 4 cut(s) | 328, 583, 943, 1302 |
| BstF5I | GGATG | 7 cut(s) | 335, 609, 844, 957, 1610, 1804, 1864 |
| BstKTI | GATC | 4 cut(s) | 185, 265, 1468, 1882 |
| BstMAI | GTCTC | 2 cut(s) | 431, 1764 |
| BstMBI | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1049, 1525, 1667, 1727 |
| BstNI | CCWGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| BstNSI | RCATGY | 4 cut(s) | 70, 359, 1508, 1661 |
| BstSCI | CCNGG | 5 cut(s) | 146, 693, 1129, 1773, 1858 |
| BstV1I | GCAGC | 1 cut(s) | 1531 |
| BstV2I | GAAGAC | 2 cut(s) | 600, 1031 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 806 |
| BsuI | GTATCC | 2 cut(s) | 831, 1629 |
| BsuRI | GGCC | 1 cut(s) | 920 |
| BtsCI | GGATG | 7 cut(s) | 335, 609, 844, 957, 1610, 1804, 1864 |
| BtsI | GCAGTG | 2 cut(s) | 1062, 1152 |
| BtsIMutI | CAGTG | 2 cut(s) | 1062, 1152 |
| Cac8I | GCNNGC | 3 cut(s) | 750, 1087, 1898 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1651 |
| CciI | TCATGA | 3 cut(s) | 1453, 1468, 1486 |
| Cfr13I | GGNCC | 1 cut(s) | 1422 |
| CseI | GACGC | 1 cut(s) | 767 |
| CsiI | ACCWGGT | 1 cut(s) | 1858 |
| Csp6I | GTAC | 4 cut(s) | 24, 903, 1230, 1843 |
| CviQI | GTAC | 4 cut(s) | 24, 903, 1230, 1843 |
| DdeI | CTNAG | 4 cut(s) | 328, 583, 943, 1302 |
| DpnI | GATC | 4 cut(s) | 184, 264, 1467, 1881 |
| DpnII | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| DraI | TTTAAA | 1 cut(s) | 1249 |
| Eam1104I | CTCTTC | 4 cut(s) | 530, 940, 1398, 1827 |
| EarI | CTCTTC | 4 cut(s) | 530, 940, 1398, 1827 |
| EciI | GGCGGA | 1 cut(s) | 1657 |
| Ecl136II | GAGCTC | 1 cut(s) | 1828 |
| Eco130I | CCWWGG | 1 cut(s) | 1311 |
| Eco24I | GRGCYC | 3 cut(s) | 303, 1461, 1830 |
| Eco47I | GGWCC | 1 cut(s) | 1422 |
| Eco53kI | GAGCTC | 1 cut(s) | 1828 |
| Eco57I | CTGAAG | 1 cut(s) | 564 |
| Eco88I | CYCGRG | 1 cut(s) | 1563 |
| EcoICRI | GAGCTC | 1 cut(s) | 1828 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1422 |
| EcoRII | CCWGG | 5 cut(s) | 146, 693, 1129, 1773, 1858 |
| EcoT14I | CCWWGG | 1 cut(s) | 1311 |
| EcoT22I | ATGCAT | 1 cut(s) | 1813 |
| EcoT38I | GRGCYC | 3 cut(s) | 303, 1461, 1830 |
| ErhI | CCWWGG | 1 cut(s) | 1311 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 252, 284 |
| FaqI | GGGAC | 1 cut(s) | 1408 |
| FauNDI | CATATG | 1 cut(s) | 730 |
| FbaI | TGATCA | 1 cut(s) | 1465 |
| FblI | GTMKAC | 1 cut(s) | 765 |
| Fnu4HI | GCNGC | 1 cut(s) | 1520 |
| FokI | GGATG | 7 cut(s) | 322, 596, 831, 964, 1597, 1811, 1851 |
| FriOI | GRGCYC | 3 cut(s) | 303, 1461, 1830 |
| Fsp4HI | GCNGC | 1 cut(s) | 1520 |
| FspBI | CTAG | 3 cut(s) | 153, 423, 578 |
| GluI | GCNGC | 1 cut(s) | 1520 |
| GsaI | CCCAGC | 1 cut(s) | 1406 |
| GsuI | CTGGAG | 4 cut(s) | 27, 919, 1221, 1707 |
| HaeIII | GGCC | 1 cut(s) | 920 |
| HgaI | GACGC | 1 cut(s) | 767 |
| Hin1I | GRCGYC | 1 cut(s) | 699 |
| HincII | GTYRAC | 1 cut(s) | 1771 |
| HindII | GTYRAC | 1 cut(s) | 1771 |
| HindIII | AAGCTT | 1 cut(s) | 1898 |
| HinfI | GANTC | 8 cut(s) | 290, 332, 719, 762, 1114, 1196, 1370, 1555 |
| HpaI | GTTAAC | 1 cut(s) | 1771 |
| HphI | GGTGA | 1 cut(s) | 1277 |
| Hpy166II | GTNNAC | 4 cut(s) | 766, 1003, 1771, 1843 |
| Hpy188I | TCNGA | 5 cut(s) | 331, 586, 625, 946, 1512 |
| Hpy8I | GTNNAC | 4 cut(s) | 766, 1003, 1771, 1843 |
| HpyAV | CCTTC | 7 cut(s) | 642, 646, 672, 865, 1016, 1262, 1545 |
| HpyCH4III | ACNGT | 2 cut(s) | 658, 806 |
| HpyCH4IV | ACGT | 3 cut(s) | 106, 699, 1228 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1049, 1525, 1667, 1727 |
| HpyF3I | CTNAG | 4 cut(s) | 328, 583, 943, 1302 |
| HpySE526I | ACGT | 3 cut(s) | 106, 699, 1228 |
| Hsp92I | GRCGYC | 1 cut(s) | 699 |
| Ksp22I | TGATCA | 1 cut(s) | 1465 |
| KspAI | GTTAAC | 1 cut(s) | 1771 |
| Kzo9I | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| LmnI | GCTCC | 4 cut(s) | 298, 1049, 1202, 1726 |
| Lsp1109I | GCAGC | 1 cut(s) | 1531 |
| LweI | GCATC | 3 cut(s) | 235, 508, 894 |
| MabI | ACCWGGT | 1 cut(s) | 1858 |
| MaeI | CTAG | 3 cut(s) | 153, 423, 578 |
| MaeII | ACGT | 3 cut(s) | 106, 699, 1228 |
| MaeIII | GTNAC | 3 cut(s) | 815, 1653, 1801 |
| MalI | GATC | 4 cut(s) | 184, 264, 1467, 1881 |
| MboI | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| MfeI | CAATTG | 1 cut(s) | 1044 |
| MhlI | GDGCHC | 3 cut(s) | 303, 1461, 1830 |
| MluCI | AATT | 8 cut(s) | 12, 32, 52, 136, 315, 851, 1044, 1253 |
| MlyI | GAGTC | 3 cut(s) | 284, 771, 1379 |
| MmeI | TCCRAC | 3 cut(s) | 454, 998, 1583 |
| Mph1103I | ATGCAT | 1 cut(s) | 1813 |
| MroXI | GAANNNNTTC | 1 cut(s) | 672 |
| MseI | TTAA | 9 cut(s) | 36, 125, 890, 1161, 1248, 1256, 1356, 1770, 1922 |
| MslI | CAYNNNNRTG | 4 cut(s) | 614, 804, 1038, 1467 |
| MspR9I | CCNGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| MunI | CAATTG | 1 cut(s) | 1044 |
| MvaI | CCWGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1049, 1525, 1667, 1727 |
| NdeI | CATATG | 1 cut(s) | 730 |
| NdeII | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| NlaIV | GGNNCC | 4 cut(s) | 300, 655, 1204, 1424 |
| NmuCI | GTSAC | 3 cut(s) | 815, 1653, 1801 |
| NsiI | ATGCAT | 1 cut(s) | 1813 |
| NspI | RCATGY | 4 cut(s) | 70, 359, 1508, 1661 |
| NspV | TTCGAA | 3 cut(s) | 676, 869, 1280 |
| OliI | CACNNNNGTG | 1 cut(s) | 804 |
| PagI | TCATGA | 3 cut(s) | 1453, 1468, 1486 |
| PciI | ACATGT | 2 cut(s) | 66, 1504 |
| PdmI | GAANNNNTTC | 1 cut(s) | 672 |
| PfeI | GAWTC | 5 cut(s) | 332, 719, 1114, 1196, 1555 |
| PkrI | GCNGC | 1 cut(s) | 1521 |
| PleI | GAGTC | 3 cut(s) | 284, 770, 1378 |
| PpsI | GAGTC | 3 cut(s) | 284, 770, 1378 |
| PpuMI | RGGWCCY | 1 cut(s) | 1422 |
| PscI | ACATGT | 2 cut(s) | 66, 1504 |
| PshBI | ATTAAT | 1 cut(s) | 1356 |
| Psp124BI | GAGCTC | 1 cut(s) | 1830 |
| Psp1406I | AACGTT | 1 cut(s) | 106 |
| Psp5II | RGGWCCY | 1 cut(s) | 1422 |
| Psp6I | CCWGG | 5 cut(s) | 146, 693, 1129, 1773, 1858 |
| PspFI | CCCAGC | 1 cut(s) | 1402 |
| PspGI | CCWGG | 5 cut(s) | 146, 693, 1129, 1773, 1858 |
| PspN4I | GGNNCC | 4 cut(s) | 300, 655, 1204, 1424 |
| PspPI | GGNCC | 1 cut(s) | 1422 |
| PspPPI | RGGWCCY | 1 cut(s) | 1422 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1651 |
| RsaI | GTAC | 4 cut(s) | 25, 904, 1231, 1844 |
| RsaNI | GTAC | 4 cut(s) | 24, 903, 1230, 1843 |
| RseI | CAYNNNNRTG | 4 cut(s) | 614, 804, 1038, 1467 |
| SacI | GAGCTC | 1 cut(s) | 1830 |
| SaqAI | TTAA | 9 cut(s) | 36, 125, 890, 1161, 1248, 1256, 1356, 1770, 1922 |
| SatI | GCNGC | 1 cut(s) | 1520 |
| Sau3AI | GATC | 4 cut(s) | 182, 262, 1465, 1879 |
| Sau96I | GGNCC | 1 cut(s) | 1422 |
| SchI | GAGTC | 3 cut(s) | 284, 771, 1379 |
| ScrFI | CCNGG | 5 cut(s) | 148, 695, 1131, 1775, 1860 |
| SduI | GDGCHC | 3 cut(s) | 303, 1461, 1830 |
| SexAI | ACCWGGT | 1 cut(s) | 1858 |
| SfaNI | GCATC | 3 cut(s) | 235, 508, 894 |
| SfuI | TTCGAA | 3 cut(s) | 676, 869, 1280 |
| SinI | GGWCC | 1 cut(s) | 1422 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 614, 804, 1038, 1467 |
| SmlI | CTYRAG | 4 cut(s) | 407, 598, 1172, 1536 |
| SmoI | CTYRAG | 4 cut(s) | 407, 598, 1172, 1536 |
| Sse9I | AATT | 8 cut(s) | 12, 32, 52, 136, 315, 851, 1044, 1253 |
| SsiI | CCGC | 1 cut(s) | 1668 |
| SspI | AATATT | 2 cut(s) | 712, 1741 |
| SspMI | CTAG | 3 cut(s) | 153, 423, 578 |
| SstI | GAGCTC | 1 cut(s) | 1830 |
| StyD4I | CCNGG | 5 cut(s) | 146, 693, 1129, 1773, 1858 |
| StyI | CCWWGG | 1 cut(s) | 1311 |
| TaaI | ACNGT | 2 cut(s) | 658, 806 |
| TaiI | ACGT | 3 cut(s) | 109, 702, 1231 |
| TaqI | TCGA | 8 cut(s) | 288, 502, 676, 869, 1280, 1350, 1549, 1830 |
| TasI | AATT | 8 cut(s) | 12, 32, 52, 136, 315, 851, 1044, 1253 |
| TatI | WGTACW | 1 cut(s) | 1842 |
| TfiI | GAWTC | 5 cut(s) | 332, 719, 1114, 1196, 1555 |
| Tru1I | TTAA | 9 cut(s) | 36, 125, 890, 1161, 1248, 1256, 1356, 1770, 1922 |
| Tru9I | TTAA | 9 cut(s) | 36, 125, 890, 1161, 1248, 1256, 1356, 1770, 1922 |
| TscAI | CASTG | 2 cut(s) | 1069, 1159 |
| TseFI | GTSAC | 3 cut(s) | 815, 1653, 1801 |
| TseI | GCWGC | 1 cut(s) | 1519 |
| Tsp45I | GTSAC | 3 cut(s) | 815, 1653, 1801 |
| TspDTI | ATGAA | 9 cut(s) | 45, 96, 606, 632, 704, 833, 1503, 1751, 1862 |
| TspRI | CASTG | 2 cut(s) | 1069, 1159 |
| VpaK11BI | GGWCC | 1 cut(s) | 1422 |
| VspI | ATTAAT | 1 cut(s) | 1356 |
| XapI | RAATTY | 3 cut(s) | 12, 32, 315 |
| XbaI | TCTAGA | 1 cut(s) | 152 |
| XceI | RCATGY | 4 cut(s) | 70, 359, 1508, 1661 |
| XmiI | GTMKAC | 1 cut(s) | 765 |
| XmnI | GAANNNNTTC | 1 cut(s) | 672 |
| XspI | CTAG | 3 cut(s) | 153, 423, 578 |
| ZraI | GACGTC | 1 cut(s) | 700 |
| Zsp2I | ATGCAT | 1 cut(s) | 1813 |