pycom15g21970

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000562
Physical Location & Seq
Reverse (-)
15984452 .. 15984919
468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g21970.1

Sequence Viewer

Length: 468 bp
ATGAATCCCGACCTGCCTTCTTTTTCAAGTGTGTGTGCCACAATTCAAAGAGAAGAGGTTCGAAGGAAAGTCATGACCTTGGACATGAAGGCAAATATACCAGAAGCTAGGGCTTACTTCTCTAACCAAAAACTTGGTGAGGAGAGAGGCTACAAAGGAAAGAAAACTGGCTTAAAATGTAGCCATTGTGATGCTGGTGGGCACTCAAGAGACCGATGCTGGATTCTTCATCCAGAGTTAAAACCAAAGTTTTCTAGGGATAACAAAGGTGTCTCGAAAGGCTCGTACAACCCTTCTTACAAGGCAAATCATGTTGCCACAACTTCTTCTGATGGAGTACTGAAGTTCACCACTAATCCAGCTGCATTGATCAACGAGTTTGCTATGTTTCTTCACAAGAAACAAGGTCTTGGAGATAGTGAAGGACCACTAAATCAGTGTGACAACAATCAAACTGCACTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 rve

Protein Analysis

156

Amino Acids

17.19

Weight (kDa)

9.24

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 2 cut(s) 287, 339
AgsI TTSAA 2 cut(s) 27, 47
AluBI AGCT 2 cut(s) 107, 362
AluI AGCT 2 cut(s) 107, 362
Alw26I GTCTC 2 cut(s) 204, 277
ApeKI GCWGC 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 149, 340
AsuII TTCGAA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 326
BclI TGATCA 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 204, 277
BfaI CTAG 2 cut(s) 108, 255
BfuAI ACCTGC 1 cut(s) 21
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmsI GCATC 2 cut(s) 181, 206
Bpu14I TTCGAA 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 441
BsmAI GTCTC 2 cut(s) 204, 277
Bso31I GGTCTC 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 369
BspHI TCATGA 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 21
BspT104I TTCGAA 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 61
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 2 cut(s) 204, 277
BstMBI GATC 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 443
BveI ACCTGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 286, 338
CviAII CATG 3 cut(s) 73, 85, 311
CviJI RGCY 7 cut(s) 107, 113, 150, 171, 183, 282, 362
CviKI_1 RGCY 7 cut(s) 107, 113, 150, 171, 183, 282, 362
CviQI GTAC 2 cut(s) 286, 338
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 76, 88, 314
FaiI YATR 6 cut(s) 74, 86, 98, 312, 386, 466
FatI CATG 3 cut(s) 72, 84, 310
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 108, 255
GluI GCNGC 1 cut(s) 363
Hin1II CATG 3 cut(s) 76, 88, 314
HinfI GANTC 2 cut(s) 4, 223
HphI GGTGA 2 cut(s) 149, 340
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 5 cut(s) 8, 73, 207, 233, 274
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 5 cut(s) 27, 57, 82, 303, 416
HpyCH4V TGCA 2 cut(s) 365, 458
Hsp92II CATG 3 cut(s) 76, 88, 314
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 1 cut(s) 369
LpnPI CCDG 7 cut(s) 26, 114, 153, 180, 205, 246, 372
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 181, 206
MaeI CTAG 2 cut(s) 108, 255
MaeIII GTNAC 1 cut(s) 440
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 4 cut(s) 65, 218, 318, 383
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 42
MnlI CCTC 3 cut(s) 49, 133, 140
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 2 cut(s) 173, 239
MslI CAYNNNNRTG 2 cut(s) 189, 463
MspA1I CMGCKG 1 cut(s) 362
NdeII GATC 1 cut(s) 369
NlaIII CATG 3 cut(s) 76, 88, 314
NmuCI GTSAC 1 cut(s) 440
NspV TTCGAA 1 cut(s) 61
PagI TCATGA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 4, 223
PkrI GCNGC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 2 cut(s) 287, 339
RsaNI GTAC 2 cut(s) 286, 338
RseI CAYNNNNRTG 2 cut(s) 189, 463
SaqAI TTAA 2 cut(s) 173, 239
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 1 cut(s) 425
ScaI AGTACT 1 cut(s) 339
SduI GDGCHC 1 cut(s) 204
SetI ASST 7 cut(s) 15, 60, 80, 109, 271, 364, 409
SfaNI GCATC 2 cut(s) 181, 206
SfuI TTCGAA 1 cut(s) 61
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 2 cut(s) 189, 463
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 1 cut(s) 42
SspMI CTAG 2 cut(s) 108, 255
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 2 cut(s) 61, 275
TaqII GACCGA 1 cut(s) 228
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 4, 223
Tru1I TTAA 2 cut(s) 173, 239
Tru9I TTAA 2 cut(s) 173, 239
TscAI CASTG 1 cut(s) 443
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 17, 101, 218
TspRI CASTG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 108, 255
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.