pycom01g04630

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000562
Physical Location & Seq
Reverse (-)
3671469 .. 3674134
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04630.2

Sequence Viewer

Length: 414 bp
ATGATAGATCTACGAAGTCATATACTCATGAACTCTGAACTCCCTTCCTTCACCAGTGTATGTGCAACAATCCAACGTGAAGAAGTGAGGAGGAAGGTCATGAACATGGGTACAAAGGCTAGTGTACCTGATGCCAGGGCTTATCTGACCAACGAGAGGAAGTACAAAGGAAAGCACCCACATTTGAAATGTCAACACTGTAACTATACAGGTCATGTTAAGGAAATGTGCTGGATTTTACATCCAGAATTAAAACCGGAGTTCATGAAGGACAACAAGGGTACACAAAGGATGAACCATACTGTACATCGTGCCAATCATGCTTTTACCTCTACTTCTAAGGGGTCTGACACATTAAAAACCTTCACAGCAAATCCTGCTGAACTCATGAATGAGTTTGCATTGTACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

138

Amino Acids

15.82

Weight (kDa)

9.39

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 6 cut(s) 112, 126, 164, 283, 306, 407
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 136
BfaI CTAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 241, 297
BseLI CCNNNNNNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 1 cut(s) 7
BspHI TCATGA 4 cut(s) 27, 99, 264, 387
BsrGI TGTACA 1 cut(s) 304
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 200, 304
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 241, 297
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 320, 377
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtsCI GGATG 2 cut(s) 241, 297
BtsIMutI CAGTG 2 cut(s) 61, 196
CciI TCATGA 4 cut(s) 27, 99, 264, 387
Csp6I GTAC 6 cut(s) 111, 125, 163, 282, 305, 406
CviAII CATG 7 cut(s) 28, 100, 106, 215, 265, 320, 388
CviJI RGCY 2 cut(s) 119, 140
CviKI_1 RGCY 2 cut(s) 119, 140
CviQI GTAC 6 cut(s) 111, 125, 163, 282, 305, 406
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 134
FaeI CATG 7 cut(s) 31, 103, 109, 218, 268, 323, 391
FatI CATG 7 cut(s) 27, 99, 105, 214, 264, 319, 387
FokI GGATG 2 cut(s) 228, 304
FspBI CTAG 1 cut(s) 120
HapII CCGG 1 cut(s) 257
Hin1II CATG 7 cut(s) 31, 103, 109, 218, 268, 323, 391
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 125, 194, 284
Hpy188I TCNGA 3 cut(s) 37, 147, 349
Hpy188III TCNNGA 5 cut(s) 28, 100, 245, 265, 388
Hpy8I GTNNAC 3 cut(s) 125, 194, 284
HpyAV CCTTC 5 cut(s) 54, 58, 88, 262, 373
HpyCH4III ACNGT 2 cut(s) 200, 304
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 65, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 377
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 7 cut(s) 31, 103, 109, 218, 268, 323, 391
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 9 cut(s) 67, 121, 141, 148, 195, 217, 258, 270, 390
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 92
MflI RGATCY 1 cut(s) 7
MluCI AATT 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 4 cut(s) 81, 84, 150, 340
MseI TTAA 4 cut(s) 219, 251, 356, 412
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 2 cut(s) 320, 377
NdeII GATC 1 cut(s) 7
NlaIII CATG 7 cut(s) 31, 103, 109, 218, 268, 323, 391
PagI TCATGA 4 cut(s) 27, 99, 264, 387
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 6 cut(s) 112, 126, 164, 283, 306, 407
RsaNI GTAC 6 cut(s) 111, 125, 163, 282, 305, 406
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 4 cut(s) 219, 251, 356, 412
Sau3AI GATC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 136
SetI ASST 7 cut(s) 79, 99, 130, 214, 332, 365, 411
SfaNI GCATC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 1 cut(s) 248
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 200, 304
TaiI ACGT 1 cut(s) 79
TasI AATT 1 cut(s) 248
TatI WGTACW 2 cut(s) 162, 304
Tru1I TTAA 4 cut(s) 219, 251, 356, 412
Tru9I TTAA 4 cut(s) 219, 251, 356, 412
TscAI CASTG 2 cut(s) 61, 203
TspDTI ATGAA 6 cut(s) 44, 116, 253, 281, 308, 404
TspRI CASTG 2 cut(s) 61, 203
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.