pycom05g05510

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000562
Physical Location & Seq
Forward (+)
6675534 .. 6676840
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g05510.2

Sequence Viewer

Length: 789 bp
ATGTCCTTACTCCTCAACACCATGGAGAAACATGTTGCTGAGATTTTCAGCTATTACAATTCGTCACTTGATCTTTCGAAAGCCTTGCAGGATATGTATGGAAATCAAAGCAATTATGCACGAGTTTTTCAACTTAAGAAGGACATTGCTAGTGCCCAACAAGAAGGAAAGGCATTTGTTCAACACCTTGGGAGTCTCAAGGCCATGTGGAATGAGTTGGATGTTTATCTCCCTTATACCATATACCCTACCACTCTCCTGAAACGAGCTGAGGAAGATAGAATCTATCAGCTGTTAGGGAGTTTGAACTCCAAATACGAGGACCTAAGGAGTCACATATTGATGAGTCAAGAATTGCCCACCTTCCACAATGTCTCCTATCTTCAAAGTAAGGGACATGGAGGAGGTTCACAAGCTCAAGGCAAGGATGAGGGCAGTCATACAGCTATGTTGGGACAGTTTGCCGACTTTCTTGCTGGAAATGAGAAAGTATCACTAGAGGAAGCACCAGTTGCAAATGGACAAAATGTCTTAGTTTTGGGCAAAAGGGAAGTAAACTTACTTTCACACAAAATACCCTCTACTGCCTTATATGTACCAACCTTTCCTTTCCAACTTCTGTCAATTGGAAAAATCACTAACACCCTAAATTGCCGTGCTATTTTCTCACCAGATAATGTAATTTTTCAAGATGTTCTCACCATGAAGATGATTGGTGAAGGGATTTTCATAAATGGACTTTCCTACTTATGCAAGAATGCTTGCTTTTCTCGGGCTCTTCGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

263

Amino Acids

29.24

Weight (kDa)

7.05

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 597
AflII CTTAAG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 5 cut(s) 131, 182, 307, 386, 689
AhdI GACNNNNNGTC 1 cut(s) 527
AluBI AGCT 6 cut(s) 51, 269, 292, 416, 446, 785
AluI AGCT 6 cut(s) 51, 269, 292, 416, 446, 785
Alw26I GTCTC 2 cut(s) 200, 379
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 3 cut(s) 660, 691, 728
AsuII TTCGAA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 1 cut(s) 322
AxyI CCTNAGG 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 778
BarI GAAGNNNNNNTAC 2 cut(s) 543, 575
BauI CACGAG 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 270
BceAI ACGGC 1 cut(s) 639
BcgI CGANNNNNNTGC 4 cut(s) 67, 101, 455, 489
BcoDI GTCTC 2 cut(s) 200, 379
BfaI CTAG 2 cut(s) 150, 497
BfrI CTTAAG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 322
BmeRI GACNNNNNGTC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 771
BmgT120I GGNCC 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 182, 402
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 21, 187
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bse1I ACTGG 1 cut(s) 509
Bse21I CCTNAGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 21, 187
BseGI GGATG 2 cut(s) 226, 433
BseJI GATNNNNATC 1 cut(s) 225
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 30, 261
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 157
BshFI GGCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 771
BslFI GGGAC 2 cut(s) 408, 468
BsmAI GTCTC 2 cut(s) 200, 379
BsmFI GGGAC 2 cut(s) 408, 468
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 771
Bsp119I TTCGAA 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 157, 778
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 21
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 31, 262
BspQI GCTCTTC 1 cut(s) 783
BspT104I TTCGAA 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 21, 187
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 21, 187
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 459
Bst6I CTCTTC 1 cut(s) 783
BstAFI CTTAAG 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 512
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 4 cut(s) 39, 270, 326, 532
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 226, 433
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 200, 379
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 512, 782
BstNSI RCATGY 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 326
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 226, 433
Cac8I GCNNGC 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 596
CviAII CATG 5 cut(s) 22, 32, 205, 398, 703
CviJI RGCY 9 cut(s) 51, 83, 203, 269, 292, 416, 446, 776, 785
CviKI_1 RGCY 9 cut(s) 51, 83, 203, 269, 292, 416, 446, 776, 785
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 4 cut(s) 39, 270, 326, 532
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DriI GACNNNNNGTC 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 783
Eam1105I GACNNNNNGTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 783
Eco130I CCWWGG 2 cut(s) 21, 187
Eco24I GRGCYC 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 21, 187
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 2 cut(s) 21, 187
FaeI CATG 5 cut(s) 25, 35, 208, 401, 706
FaqI GGGAC 2 cut(s) 408, 468
FatI CATG 5 cut(s) 21, 31, 204, 397, 702
FokI GGATG 2 cut(s) 233, 440
FriOI GRGCYC 1 cut(s) 778
FspBI CTAG 2 cut(s) 150, 497
HaeIII GGCC 1 cut(s) 203
Hin1II CATG 5 cut(s) 25, 35, 208, 401, 706
HinfI GANTC 4 cut(s) 193, 282, 331, 346
HphI GGTGA 3 cut(s) 660, 691, 728
Hpy166II GTNNAC 2 cut(s) 410, 556
Hpy188III TCNNGA 3 cut(s) 259, 350, 689
Hpy8I GTNNAC 2 cut(s) 410, 556
HpyAV CCTTC 4 cut(s) 133, 158, 373, 713
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4V TGCA 4 cut(s) 88, 119, 515, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 782
HpyF3I CTNAG 4 cut(s) 39, 270, 326, 532
Hsp92II CATG 5 cut(s) 25, 35, 208, 401, 706
Kzo9I GATC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 783
LpnPI CCDG 5 cut(s) 74, 272, 462, 522, 684
MaeI CTAG 2 cut(s) 150, 497
MaeIII GTNAC 2 cut(s) 63, 332
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 4 cut(s) 287, 374, 718, 770
MfeI CAATTG 1 cut(s) 624
MhlI GDGCHC 2 cut(s) 157, 778
MluCI AATT 6 cut(s) 58, 112, 353, 624, 649, 681
MlyI GAGTC 3 cut(s) 202, 340, 355
MmeI TCCRAC 2 cut(s) 198, 637
MnlI CCTC 8 cut(s) 23, 265, 313, 395, 398, 424, 493, 589
MseI TTAA 2 cut(s) 135, 787
MslI CAYNNNNRTG 2 cut(s) 341, 707
MspA1I CMGCKG 1 cut(s) 292
MspCI CTTAAG 1 cut(s) 134
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 763
MwoI GCNNNNNNNGC 2 cut(s) 512, 782
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 70
NlaIII CATG 5 cut(s) 25, 35, 208, 401, 706
NmuCI GTSAC 2 cut(s) 63, 332
NspI RCATGY 1 cut(s) 35
NspV TTCGAA 1 cut(s) 77
PciI ACATGT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 778
PctI GAATGC 1 cut(s) 763
PfeI GAWTC 1 cut(s) 282
PleI GAGTC 3 cut(s) 201, 339, 354
PpsI GAGTC 3 cut(s) 201, 339, 354
PpuMI RGGWCCY 1 cut(s) 322
PscI ACATGT 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 322
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PsrI GAACNNNNNNTAC 2 cut(s) 299, 331
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
RseI CAYNNNNRTG 2 cut(s) 341, 707
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 2 cut(s) 135, 787
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 3 cut(s) 202, 340, 355
SduI GDGCHC 2 cut(s) 157, 778
SfuI TTCGAA 1 cut(s) 77
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 2 cut(s) 341, 707
SmlI CTYRAG 3 cut(s) 134, 197, 417
SmoI CTYRAG 3 cut(s) 134, 197, 417
Sse9I AATT 6 cut(s) 58, 112, 353, 624, 649, 681
SspMI CTAG 2 cut(s) 150, 497
StyI CCWWGG 2 cut(s) 21, 187
TaaI ACNGT 1 cut(s) 459
TaqI TCGA 2 cut(s) 77, 781
TasI AATT 6 cut(s) 58, 112, 353, 624, 649, 681
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 135, 787
Tru9I TTAA 2 cut(s) 135, 787
TseFI GTSAC 2 cut(s) 63, 332
Tsp45I GTSAC 2 cut(s) 63, 332
TspDTI ATGAA 2 cut(s) 718, 719
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 322
XceI RCATGY 1 cut(s) 35
XspI CTAG 2 cut(s) 150, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.